CX287253

Overview
NameCX287253
Unique NameCX287253
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length587
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_AETGR (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Aethionema grandiflora GN=ndhC PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 1.711e-58
Identity = 108/120 (90.00%), Postives = 114/120 (95.00%), Query Frame = 1 
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MFLLY+YDIFWAFLIISS IP LAFLIS VL+PI KGPEKLSSYESGIEP+GDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGV  FIEAF+F+LILI+GLVYAWRKGALEWS
Sbjct:    1 MFLLYEYDIFWAFLIISSAIPFLAFLISGVLSPIRKGPEKLSSYESGIEPIGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSAFIEAFVFVLILILGLVYAWRKGALEWS 120
[Close]
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_AETCO (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Aethionema cordifolium GN=ndhC PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 1.711e-58
Identity = 108/120 (90.00%), Postives = 114/120 (95.00%), Query Frame = 1 
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MFLLY+YDIFWAFLIISS IP LAFLIS +L+PI KGPEKLSSYESGIEP+GDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGV  FIEAFIF+LILI+GLVYAWRKGALEWS
Sbjct:    1 MFLLYEYDIFWAFLIISSAIPFLAFLISGILSPIRKGPEKLSSYESGIEPIGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSAFIEAFIFVLILILGLVYAWRKGALEWS 120
[Close]
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_TRACE (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Trachelium caeruleum GN=ndhC PE=3 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 2.918e-58
Identity = 108/120 (90.00%), Postives = 115/120 (95.83%), Query Frame = 1 
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            M LLY+YDIFWAFLIISS+IPILAF +S VLAPI+KGPEK SSYESGIEP+GDAWLQFRIRYYMFALVFVVFDVETVFLYPW+MSFDVLGV VFIEAFIF+LILIVGLVYAWRKGALEWS
Sbjct:    1 MLLLYEYDIFWAFLIISSLIPILAFFLSGVLAPISKGPEKFSSYESGIEPIGDAWLQFRIRYYMFALVFVVFDVETVFLYPWSMSFDVLGVSVFIEAFIFVLILIVGLVYAWRKGALEWS 120
[Close]
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_OLIPU (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Olimarabidopsis pumila GN=ndhC PE=3 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 2.918e-58
Identity = 108/120 (90.00%), Postives = 114/120 (95.00%), Query Frame = 1 
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MFLLY+YDIFWAFLIISS IP+LAFLIS VL+PI KGPEKLSSYESGIEP+GDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGV  FIEA IF+LILI+GLVYAWRKGALEWS
Sbjct:    1 MFLLYEYDIFWAFLIISSAIPVLAFLISGVLSPIRKGPEKLSSYESGIEPIGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSAFIEALIFVLILILGLVYAWRKGALEWS 120
[Close]
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_LEPVR (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Lepidium virginicum GN=ndhC PE=3 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 2.918e-58
Identity = 108/120 (90.00%), Postives = 114/120 (95.00%), Query Frame = 1 
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MFLLY+YDIFWAFLIISS IP+LAFLIS VL+PI KGPEKLSSYESGIEP+GDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGV  FIEA IF+LILI+GLVYAWRKGALEWS
Sbjct:    1 MFLLYEYDIFWAFLIISSAIPVLAFLISGVLSPIRKGPEKLSSYESGIEPIGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSAFIEALIFVLILILGLVYAWRKGALEWS 120
[Close]
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_LACSA (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Lactuca sativa GN=ndhC PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 3.811e-58
Identity = 108/120 (90.00%), Postives = 114/120 (95.00%), Query Frame = 1 
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MFLLY+YDIFWAFLIISS+IPIL F IS  LAPI+KGPEKLSSYESGIEP+GDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGV VF+EA IF+LILIVGLVYAWRKGALEWS
Sbjct:    1 MFLLYEYDIFWAFLIISSLIPILVFFISGFLAPISKGPEKLSSYESGIEPIGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFVEALIFVLILIVGLVYAWRKGALEWS 120
[Close]
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_DRIGR (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Drimys granadensis GN=ndhC PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 3.811e-58
Identity = 109/120 (90.83%), Postives = 115/120 (95.83%), Query Frame = 1 
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MFLLY+YDIFWAFLIISS+IPILAFLIS VLAPI++GPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGV VFIEA IF+LI I+G VYAWRKGALEWS
Sbjct:    1 MFLLYEYDIFWAFLIISSLIPILAFLISGVLAPISEGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEALIFVLIPIIGSVYAWRKGALEWS 120
[Close]
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_MORIN (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Morus indica GN=ndhC PE=3 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 4.977e-58
Identity = 108/120 (90.00%), Postives = 114/120 (95.00%), Query Frame = 1 
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MFLLY+YDIFWAFLIISSVIPI AF+IS VLAPI+KGPEKLSSYESGIEPMGDAWLQFRI YYMFALVFVVFDVETVFLYPWAMSFD+LGV VFIEA IF+LILIVG +YAWRKGALEWS
Sbjct:    1 MFLLYEYDIFWAFLIISSVIPIFAFIISGVLAPISKGPEKLSSYESGIEPMGDAWLQFRICYYMFALVFVVFDVETVFLYPWAMSFDILGVSVFIEALIFVLILIVGSIYAWRKGALEWS 120
[Close]
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_LIRTU (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Liriodendron tulipifera GN=ndhC PE=3 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 4.977e-58
Identity = 110/120 (91.67%), Postives = 115/120 (95.83%), Query Frame = 1 
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MFLL++YDIFWAFLIISSVIPILAFLIS VLAPI++GPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGV VFIEA IF+LI IVG VYAWRKGALEWS
Sbjct:    1 MFLLHEYDIFWAFLIISSVIPILAFLISGVLAPISEGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEALIFVLIPIVGSVYAWRKGALEWS 120
[Close]
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_LEMMI (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Lemna minor GN=ndhC PE=3 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 4.977e-58
Identity = 107/120 (89.17%), Postives = 116/120 (96.67%), Query Frame = 1 
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MFLLY+YDIFWAFL+ISSVIPILAF+IS VLAP+++GPEKLSSYESGIEP+GDAW+QFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGV VFIEA IF+LILIVG VYAWRKGALEWS
Sbjct:    1 MFLLYEYDIFWAFLVISSVIPILAFIISGVLAPLSEGPEKLSSYESGIEPIGDAWVQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEALIFVLILIVGSVYAWRKGALEWS 120
The following BLAST results are available for this feature:
BLAST of CX287253 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 441
Match NameE-valueIdentityDescription
NU3C_AETGR1.711e-5890.00NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_AETCO1.711e-5890.00NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_TRACE2.918e-5890.00NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_OLIPU2.918e-5890.00NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_LEPVR2.918e-5890.00NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_LACSA3.811e-5890.00NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_DRIGR3.811e-5890.83NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_MORIN4.977e-5890.00NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_LIRTU4.977e-5891.67NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_LEMMI4.977e-5889.17NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]

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Properties
Property NameValue
Genbank descriptionC01006E04SK Veg1 Citrus clementina cDNA clone C01006E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287253 ID=CX287253; Name=CX287253; organism=Citrus clementina; type=EST; length=587bp
GTAGGATTCCAATCGAGAAATCTTAAAACGAGACATCACAACAAACAAAC
GAAACTTTGCGGTTCGATCAAAATGAATTGTTGTTTTGATTAACCAATTA
TCGATGACTTGACAATGAATTCCAATTTGCATCGACAAATTTGGTCTATT
TTCCACATTCATAGGAGTTTGGCTATGTTTCTGCTTTACAAATATGATAT
TTTCTGGGCATTTCTAATAATATCAAGCGTTATTCCTATTTTGGCATTTC
TAATTTCCGCAGTTTTAGCCCCGATTAACAAAGGGCCAGAGAAACTTTCT
AGTTATGAATCGGGTATCGAACCAATGGGCGATGCTTGGTTACAATTTCG
AATCCGGTATTATATGTTTGCTCTAGTTTTTGTTGTTTTTGATGTTGAAA
CCGTTTTTCTTTATCCATGGGCAATGAGTTTTGATGTATTGGGGGTACCC
GTATTTATAGAAGCTTTCATTTTCATGCTTATCCTAATTGTTGGTTTAGT
TTATGCGTGGCGAAAAGGAGCATTAGAGTGGTCTTAGTTTCTGAATATTC
AGACAATAGCAAAAAAGTAAAAAAAAAAAAAAAAAAA
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