CX287253

Overview
NameCX287253
Unique NameCX287253
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length587
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3M_HALGR (NADH-ubiquinone oxidoreductase chain 3 OS=Halichoerus grypus GN=MT-ND3 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.676e-11
Identity = 37/109 (33.94%), Postives = 59/109 (54.13%), Query Frame = 1
Query:  214 LIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFL--YPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            L  ++ +  L  LI+  L  +N   EK+S YE G +PMG A L F +++++ A+ F++FD+E   L   PWA   D L   +   A + + +L   L Y W +  LEW+
Sbjct:    7 LFTNTALASLLVLIAFWLPQLNTYSEKVSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASHTDNL-TTMLTMALLLISLLAASLAYEWTEKGLEWT 114          
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3M_BOVIN (NADH-ubiquinone oxidoreductase chain 3 OS=Bos taurus GN=MT-ND3 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.676e-11
Identity = 34/108 (31.48%), Postives = 59/108 (54.63%), Query Frame = 1
Query:  214 LIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILI-VGLVYAWRKGALEWS 534
            L+ +  +  L  +I+  L  +N   EK S YE G +PMG A L F +++++ A+ F++FD+E   L P   +     +   +   +F++IL+ V L Y W +  LEW+
Sbjct:    7 LLTNFTLATLLVIIAFWLPQLNVYSEKTSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTANLNTMLTMALFLIILLAVSLAYEWTQKGLEWT 114          
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3M_BOSMU (NADH-ubiquinone oxidoreductase chain 3 OS=Bos mutus grunniens GN=MT-ND3 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.676e-11
Identity = 34/108 (31.48%), Postives = 59/108 (54.63%), Query Frame = 1
Query:  214 LIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILI-VGLVYAWRKGALEWS 534
            L+ +  +  L  +I+  L  +N   EK S YE G +PMG A L F +++++ A+ F++FD+E   L P   +     +   +   +F++IL+ V L Y W +  LEW+
Sbjct:    7 LLTNFTLATLLVIIAFWLPQLNVYSEKTSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTTNLNTMLTMALFLIILLAVSLAYEWTQKGLEWT 114          
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3M_BOSIN (NADH-ubiquinone oxidoreductase chain 3 OS=Bos indicus GN=MT-ND3 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.676e-11
Identity = 34/108 (31.48%), Postives = 59/108 (54.63%), Query Frame = 1
Query:  214 LIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILI-VGLVYAWRKGALEWS 534
            L+ +  +  L  +I+  L  +N   EK S YE G +PMG A L F +++++ A+ F++FD+E   L P   +     +   +   +F++IL+ V L Y W +  LEW+
Sbjct:    7 LLTNFTLATLLVIIAFWLPQLNVYSEKTSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTTNLNTMLTMALFLIILLAVSLAYEWTQKGLEWT 114          
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3M_BALPH (NADH-ubiquinone oxidoreductase chain 3 OS=Balaenoptera physalus GN=MT-ND3 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.676e-11
Identity = 36/109 (33.03%), Postives = 60/109 (55.05%), Query Frame = 1
Query:  214 LIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFL--YPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            L+ ++ + +L   I+  L  +N   EK S YE G +PMG A L F +++++ A+ F++FD+E   L   PWA+  + L   + +  F+  L L   L Y W +  LEW+
Sbjct:    7 LLTNTTLALLLVFIAFWLPQLNVYAEKTSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAIQSNNLNTMLTMALFLISL-LAASLAYEWTQEGLEWA 114          
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3M_BALMU (NADH-ubiquinone oxidoreductase chain 3 OS=Balaenoptera musculus GN=MT-ND3 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.676e-11
Identity = 36/109 (33.03%), Postives = 60/109 (55.05%), Query Frame = 1
Query:  214 LIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFL--YPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            L+ ++ + +L   I+  L  +N   EK S YE G +PMG A L F +++++ A+ F++FD+E   L   PWA+  + L   + +  F+  L L   L Y W +  LEW+
Sbjct:    7 LLTNTTLALLLVFIAFWLPQLNVYAEKTSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAIQSNNLNTMLTMALFLISL-LAASLAYEWTQEGLEWA 114          
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3M_PODFL (NADH-ubiquinone oxidoreductase chain 3 OS=Podomys floridanus GN=MT-ND3 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.495e-11
Identity = 37/109 (33.94%), Postives = 63/109 (57.80%), Query Frame = 1
Query:  214 LIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFL--YPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            +I+S+ + ++AF     L  +N   EK + YE G +PM  A L F +++++ A+ F++FD+E   L   PWA+    + + +   AFI + IL +GL Y W +  LEW+
Sbjct:   11 IILSTCLIMIAFW----LPQLNVYTEKANPYECGFDPMSSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAIQMHNINM-MMSTAFILVSILALGLAYEWLQKGLEWT 114          
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3M_PISOC (NADH-ubiquinone oxidoreductase chain 3 OS=Pisaster ochraceus GN=ND3 PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 3.495e-11
Identity = 34/110 (30.91%), Postives = 64/110 (58.18%), Query Frame = 1
Query:  214 LIISSVIPILAFLISAV-LAPINK-GPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVP-VFIEAFIFMLILIVGLVYAWRKGALEWS 534
            +I+ S++ + A L+ A    P  K   E  S YE G +P+  A + F  R+++ A++F++FD+E   L+P+  +  +     V   A +F+ IL++GL++ W +G L+W+
Sbjct:    6 IIVLSILAVTAALVFAAHFLPSRKLDLENGSPYECGFDPLNSARVPFSFRFFLVAILFLLFDLEIALLFPFPQALFIFNSSHVLYIATLFLAILLIGLIFEWTQGGLDWA 115          
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3M_PIG (NADH-ubiquinone oxidoreductase chain 3 OS=Sus scrofa GN=MT-ND3 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.495e-11
Identity = 35/108 (32.41%), Postives = 58/108 (53.70%), Query Frame = 1
Query:  214 LIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILI-VGLVYAWRKGALEWS 534
            L+ +  +  L  LI+  L  +N   EK S YE G +PMG A L F +++++ A+ F++FD+E   L P   +     +   +   +F+LIL+   L Y W +  LEW+
Sbjct:    7 LLTNVTLASLLVLIAFWLPQLNAYSEKTSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTNNLKTMLTMALFLLILLAASLAYEWTQKGLEWA 114          
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3M_LOXAF (NADH-ubiquinone oxidoreductase chain 3 OS=Loxodonta africana GN=MT-ND3 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.495e-11
Identity = 34/109 (31.19%), Postives = 64/109 (58.72%), Query Frame = 1
Query:  214 LIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFL--YPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            L+ ++++  L  LI+  L       EK S YE G +P+G A L F +++++ A+ F++FD+E   L   PWA+  +   + + + +F+ +++L +GL Y W +  LEW+
Sbjct:    7 LLTNTMLTSLMVLIAFWLPQTYNYSEKTSPYECGFDPVGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAIQANNTSLTLLM-SFMLIILLAIGLAYEWLQKGLEWT 114          
The following BLAST results are available for this feature:
BLAST of CX287253 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 441
Match NameE-valueIdentityDescription
NU3M_HALGR2.676e-1133.94NADH-ubiquinone oxidoreductase chain 3 OS=Halichoe... [more]
NU3M_BOVIN2.676e-1131.48NADH-ubiquinone oxidoreductase chain 3 OS=Bos taur... [more]
NU3M_BOSMU2.676e-1131.48NADH-ubiquinone oxidoreductase chain 3 OS=Bos mutu... [more]
NU3M_BOSIN2.676e-1131.48NADH-ubiquinone oxidoreductase chain 3 OS=Bos indi... [more]
NU3M_BALPH2.676e-1133.03NADH-ubiquinone oxidoreductase chain 3 OS=Balaenop... [more]
NU3M_BALMU2.676e-1133.03NADH-ubiquinone oxidoreductase chain 3 OS=Balaenop... [more]
NU3M_PODFL3.495e-1133.94NADH-ubiquinone oxidoreductase chain 3 OS=Podomys ... [more]
NU3M_PISOC3.495e-1130.91NADH-ubiquinone oxidoreductase chain 3 OS=Pisaster... [more]
NU3M_PIG3.495e-1132.41NADH-ubiquinone oxidoreductase chain 3 OS=Sus scro... [more]
NU3M_LOXAF3.495e-1131.19NADH-ubiquinone oxidoreductase chain 3 OS=Loxodont... [more]

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Properties
Property NameValue
Genbank descriptionC01006E04SK Veg1 Citrus clementina cDNA clone C01006E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287253 ID=CX287253; Name=CX287253; organism=Citrus clementina; type=EST; length=587bp
GTAGGATTCCAATCGAGAAATCTTAAAACGAGACATCACAACAAACAAAC
GAAACTTTGCGGTTCGATCAAAATGAATTGTTGTTTTGATTAACCAATTA
TCGATGACTTGACAATGAATTCCAATTTGCATCGACAAATTTGGTCTATT
TTCCACATTCATAGGAGTTTGGCTATGTTTCTGCTTTACAAATATGATAT
TTTCTGGGCATTTCTAATAATATCAAGCGTTATTCCTATTTTGGCATTTC
TAATTTCCGCAGTTTTAGCCCCGATTAACAAAGGGCCAGAGAAACTTTCT
AGTTATGAATCGGGTATCGAACCAATGGGCGATGCTTGGTTACAATTTCG
AATCCGGTATTATATGTTTGCTCTAGTTTTTGTTGTTTTTGATGTTGAAA
CCGTTTTTCTTTATCCATGGGCAATGAGTTTTGATGTATTGGGGGTACCC
GTATTTATAGAAGCTTTCATTTTCATGCTTATCCTAATTGTTGGTTTAGT
TTATGCGTGGCGAAAAGGAGCATTAGAGTGGTCTTAGTTTCTGAATATTC
AGACAATAGCAAAAAAGTAAAAAAAAAAAAAAAAAAA
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