CX287253

Overview
NameCX287253
Unique NameCX287253
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length587
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3M_STRPU (NADH-ubiquinone oxidoreductase chain 3 OS=Strongylocentrotus purpuratus GN=ND3 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.565e-11
Identity = 38/113 (33.63%), Postives = 61/113 (53.98%), Query Frame = 1
Query:  199 IFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIE-AFIFMLILIVGLVYAWRKGALEWS 534
            I + F I  +V  +L  L +  L       EK S YE G +P+  A L F  R+++ A++F++FD+E   L+P   +  +      I  + +FM+IL +GLV+ W  G LEW+
Sbjct:    4 IIFLFSITIAVAVVLG-LAAHALPNRTSDSEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPAASLITPPSTLIPISMVFMVILTLGLVFEWINGGLEWA 115          
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3M_PHOVI (NADH-ubiquinone oxidoreductase chain 3 OS=Phoca vitulina GN=MT-ND3 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.565e-11
Identity = 37/109 (33.94%), Postives = 58/109 (53.21%), Query Frame = 1
Query:  214 LIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFL--YPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            L  ++ +  L  LI+  L  +N   EK S YE G +PMG A L F +++++ A+ F++FD+E   L   PWA   D L   +   A + + +L   L Y W +  LEW+
Sbjct:    7 LFTNTALASLLVLIAFWLPQLNTYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASHTDNL-TTMLTMALLLISLLAASLAYEWTEKGLEWT 114          
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3M_PERSL (NADH-ubiquinone oxidoreductase chain 3 OS=Peromyscus slevini GN=MT-ND3 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.565e-11
Identity = 34/109 (31.19%), Postives = 60/109 (55.05%), Query Frame = 1
Query:  214 LIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFL--YPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            L ++  +      I+  L  +N   EK + YE G +PM  A L F +++++ A+ F++FD+E   L   PWA+  + +   + + AFI + +L +GL Y W +  LEW+
Sbjct:    7 LSVNIALSTCLITIAFWLPQLNLYTEKANPYECGFDPMSSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAIQMNNINT-MMLTAFILVSVLALGLAYEWMQKGLEWT 114          
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3M_OCHNU (NADH-ubiquinone oxidoreductase chain 3 OS=Ochrotomys nuttalli GN=MT-ND3 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.565e-11
Identity = 33/109 (30.28%), Postives = 62/109 (56.88%), Query Frame = 1
Query:  214 LIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFL--YPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            + +++++ ++   ++  L  +N   EK + YE G +PM  A L F +++++ A+ F++FD+E   L   PWA+    + + V   A I + IL +GL Y W +  LEW+
Sbjct:    7 IAVNTILSLILITVAFWLPQLNIYTEKANPYECGFDPMSSARLPFSMKFFLVAITFLLFDLEIALLLPIPWAIQTPHINM-VLPTALILLTILALGLAYEWLQKGLEWT 114          
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3M_MOUSE (NADH-ubiquinone oxidoreductase chain 3 OS=Mus musculus GN=Mtnd3 PE=3 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 4.565e-11
Identity = 35/112 (31.25%), Postives = 62/112 (55.36%), Query Frame = 1
Query:  205 WAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYP--WAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            +  + I+ ++ +   L++  L  +N   EK + YE G +P   A L F +++++ A+ F++FD+E   L P  WA+   +    + I AFI + IL +GL Y W +  LEW+
Sbjct:    4 YTVIFINILLSLTLILVAFWLPQMNLYSEKANPYECGFDPTSSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAIQ-TIKTSTMMIMAFILVTILSLGLAYEWTQKGLEWT 114          
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3M_HABLO (NADH-ubiquinone oxidoreductase chain 3 OS=Habromys lophurus GN=MT-ND3 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.565e-11
Identity = 33/109 (30.28%), Postives = 61/109 (55.96%), Query Frame = 1
Query:  214 LIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFL--YPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            L ++  + +    I+  L  +N   EK + YE G +PM  A L F +++++ A+ F++FD+E   L   PWA+  + +   + + +FI + +L +GL Y W +  LEW+
Sbjct:    7 LSVNIALSMCLITIAFWLPQLNMYTEKANPYECGFDPMSSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAIQMNNINT-MMLTSFILVSVLALGLAYEWMQKGLEWT 114          
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3M_USTMA (NADH-ubiquinone oxidoreductase chain 3 OS=Ustilago maydis GN=ND3 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.962e-11
Identity = 41/110 (37.27%), Postives = 63/110 (57.27%), Query Frame = 1
Query:  199 IFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPM-GDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGAL 525
            +F+ F+ I +VI + A L+ AV  P +   EK++ YE G  P+ G     F I++Y+  ++F+VFD+E +  YP+AM+        F    IF L+L VG VY +  GAL
Sbjct:    6 LFFLFIPILAVILLFANLLLAVHRPDS---EKVTPYECGFSPVYGQTRNPFSIQFYLVGILFLVFDIEILLTYPYAMNLYQTSTYGFWIFVIFFLVLTVGFVYEFGTGAL 112          
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3M_LOCMI (NADH-ubiquinone oxidoreductase chain 3 OS=Locusta migratoria GN=ND3 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.962e-11
Identity = 33/109 (30.28%), Postives = 66/109 (60.55%), Query Frame = 1
Query:  214 LIISSVIPILAFLISAVLAPIN-KGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVF-IEAFIFMLILIVGLVYAWRKGALEWS 534
            + IS ++P++  L++  L+  +    EK S +E G +P  +  + F I++++ A++F++FDVE   + P  +      + V+ +   +F++IL+VGL Y W +GAL+W+
Sbjct:    8 ITISFLLPMIVMLLATTLSKKSINDREKSSPFECGFDPKLN--MPFSIQFFLIAVIFLIFDVEIALILPIVIIMKTSNIMVWTLSTMLFIIILLVGLYYEWNQGALKWA 114          
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3M_ASTPE (NADH-ubiquinone oxidoreductase chain 3 OS=Asterina pectinifera GN=ND3 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.962e-11
Identity = 38/115 (33.04%), Postives = 60/115 (52.17%), Query Frame = 1
Query:  211 FLIISSVIPILAFLISAV-------LAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            F  ++  + IL FLI+ +       L   N   EK S YE G +P+  A + F  R+++ A++F++FD+E   L+P   S       VF       LIL VGL++ W +G L+W+
Sbjct:    8 FNFLTLFVSILIFLITTLITFAAHFLPSRNTDSEKSSPYECGFDPLNSARVPFSFRFFLVAILFLLFDLEIALLFPLPFS-------VFFHPIHTPLILTVGLIFEWVQGGLDWA 115          
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3M_PERMX (NADH-ubiquinone oxidoreductase chain 3 OS=Peromyscus mexicanus GN=MT-ND3 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.787e-11
Identity = 34/108 (31.48%), Postives = 60/108 (55.56%), Query Frame = 1
Query:  214 LIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGV-PVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            + +SS + ++AF     L  +N   EK + YE G +PM  A L F +++++ A+ F +FD+E   L P   +  +  +  + + AFI + +L +GL Y W +  LEW+
Sbjct:   11 ITLSSCLIMIAFW----LPQLNLYTEKANPYECGFDPMSSARLPFSMKFFLVAITFFLFDLEIALLLPLPWAIQMYNINTMMLTAFILVSVLALGLAYEWMQKGLEWT 114          
The following BLAST results are available for this feature:
BLAST of CX287253 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 441
Match NameE-valueIdentityDescription
NU3M_STRPU4.565e-1133.63NADH-ubiquinone oxidoreductase chain 3 OS=Strongyl... [more]
NU3M_PHOVI4.565e-1133.94NADH-ubiquinone oxidoreductase chain 3 OS=Phoca vi... [more]
NU3M_PERSL4.565e-1131.19NADH-ubiquinone oxidoreductase chain 3 OS=Peromysc... [more]
NU3M_OCHNU4.565e-1130.28NADH-ubiquinone oxidoreductase chain 3 OS=Ochrotom... [more]
NU3M_MOUSE4.565e-1131.25NADH-ubiquinone oxidoreductase chain 3 OS=Mus musc... [more]
NU3M_HABLO4.565e-1130.28NADH-ubiquinone oxidoreductase chain 3 OS=Habromys... [more]
NU3M_USTMA5.962e-1137.27NADH-ubiquinone oxidoreductase chain 3 OS=Ustilago... [more]
NU3M_LOCMI5.962e-1130.28NADH-ubiquinone oxidoreductase chain 3 OS=Locusta ... [more]
NU3M_ASTPE5.962e-1133.04NADH-ubiquinone oxidoreductase chain 3 OS=Asterina... [more]
NU3M_PERMX7.787e-1131.48NADH-ubiquinone oxidoreductase chain 3 OS=Peromysc... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01006E04SK Veg1 Citrus clementina cDNA clone C01006E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287253 ID=CX287253; Name=CX287253; organism=Citrus clementina; type=EST; length=587bp
GTAGGATTCCAATCGAGAAATCTTAAAACGAGACATCACAACAAACAAAC
GAAACTTTGCGGTTCGATCAAAATGAATTGTTGTTTTGATTAACCAATTA
TCGATGACTTGACAATGAATTCCAATTTGCATCGACAAATTTGGTCTATT
TTCCACATTCATAGGAGTTTGGCTATGTTTCTGCTTTACAAATATGATAT
TTTCTGGGCATTTCTAATAATATCAAGCGTTATTCCTATTTTGGCATTTC
TAATTTCCGCAGTTTTAGCCCCGATTAACAAAGGGCCAGAGAAACTTTCT
AGTTATGAATCGGGTATCGAACCAATGGGCGATGCTTGGTTACAATTTCG
AATCCGGTATTATATGTTTGCTCTAGTTTTTGTTGTTTTTGATGTTGAAA
CCGTTTTTCTTTATCCATGGGCAATGAGTTTTGATGTATTGGGGGTACCC
GTATTTATAGAAGCTTTCATTTTCATGCTTATCCTAATTGTTGGTTTAGT
TTATGCGTGGCGAAAAGGAGCATTAGAGTGGTCTTAGTTTCTGAATATTC
AGACAATAGCAAAAAAGTAAAAAAAAAAAAAAAAAAA
back to top