CX287253

Overview
NameCX287253
Unique NameCX287253
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length587
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_OENPA (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Oenothera parviflora GN=ndhC PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 6.501e-58
Identity = 106/120 (88.33%), Postives = 115/120 (95.83%), Query Frame = 1 
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MFLLY+YDIFWAFLIISSVIPILAF IS +LAP +KGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVET+FLYPWA+SFD+LGV VFIEA IF+LIL++GLVYAWRKGALEWS
Sbjct:    1 MFLLYEYDIFWAFLIISSVIPILAFRISGLLAPTSKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETIFLYPWALSFDILGVSVFIEALIFVLILVLGLVYAWRKGALEWS 120
[Close]
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_OENAR (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Oenothera argillicola GN=ndhC PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 6.501e-58
Identity = 106/120 (88.33%), Postives = 115/120 (95.83%), Query Frame = 1 
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MFLLY+YDIFWAFLIISSVIPILAF IS +LAP +KGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVET+FLYPWA+SFD+LGV VFIEA IF+LIL++GLVYAWRKGALEWS
Sbjct:    1 MFLLYEYDIFWAFLIISSVIPILAFRISGLLAPTSKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETIFLYPWALSFDILGVSVFIEALIFVLILVLGLVYAWRKGALEWS 120
[Close]
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_CERDE (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Ceratophyllum demersum GN=ndhC PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 6.501e-58
Identity = 108/120 (90.00%), Postives = 115/120 (95.83%), Query Frame = 1 
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MFLL++YDIFWAFLIISS+IPILAFLIS VLAP+++GPEK SSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGV VFIEA IF+LI IVGLVYAWRKGALEWS
Sbjct:    1 MFLLHEYDIFWAFLIISSIIPILAFLISGVLAPLSEGPEKFSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEALIFVLIPIVGLVYAWRKGALEWS 120
[Close]
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_CALFG (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Calycanthus floridus var. glaucus GN=ndhC PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 6.501e-58
Identity = 110/120 (91.67%), Postives = 114/120 (95.00%), Query Frame = 1 
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MFLL++YDIFWAFLIISSVIPILAFLIS VLAPI +GPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGV VFIEA IF+LI IVG VYAWRKGALEWS
Sbjct:    1 MFLLHEYDIFWAFLIISSVIPILAFLISGVLAPIREGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEALIFVLIPIVGSVYAWRKGALEWS 120
[Close]
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_PELHO (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Pelargonium hortorum GN=ndhC PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 8.490e-58
Identity = 107/120 (89.17%), Postives = 115/120 (95.83%), Query Frame = 1 
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MFLLY+YD+FW FLIISS+IPILAFLIS VLAPI++GPEKLSSYESGIEPMGDAWLQFRIRYY+FALVFVVFDVETVFLYPWAMSFDVLGV VFIEA +F+LILIVG VYAWRKGALEWS
Sbjct:    1 MFLLYEYDLFWVFLIISSLIPILAFLISGVLAPISEGPEKLSSYESGIEPMGDAWLQFRIRYYIFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEALVFVLILIVGSVYAWRKGALEWS 120
[Close]
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_ORYSJ (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Oryza sativa subsp. japonica GN=ndhC PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.109e-57
Identity = 106/120 (88.33%), Postives = 116/120 (96.67%), Query Frame = 1 
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MFLL++YDIFWAFLII+S+IPILAF ISA+LAP+ +GPEKLSSYESGIEPMG AWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLG+ VFIEAFIF+LIL+VGLVYAWRKGALEWS
Sbjct:    1 MFLLHEYDIFWAFLIIASLIPILAFWISALLAPVREGPEKLSSYESGIEPMGGAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGISVFIEAFIFVLILVVGLVYAWRKGALEWS 120
[Close]
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_ORYSI (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Oryza sativa subsp. indica GN=ndhC PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.109e-57
Identity = 106/120 (88.33%), Postives = 116/120 (96.67%), Query Frame = 1 
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MFLL++YDIFWAFLII+S+IPILAF ISA+LAP+ +GPEKLSSYESGIEPMG AWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLG+ VFIEAFIF+LIL+VGLVYAWRKGALEWS
Sbjct:    1 MFLLHEYDIFWAFLIIASLIPILAFWISALLAPVREGPEKLSSYESGIEPMGGAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGISVFIEAFIFVLILVVGLVYAWRKGALEWS 120
[Close]
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_ORYSA (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Oryza sativa GN=ndhC PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.109e-57
Identity = 106/120 (88.33%), Postives = 116/120 (96.67%), Query Frame = 1 
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MFLL++YDIFWAFLII+S+IPILAF ISA+LAP+ +GPEKLSSYESGIEPMG AWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLG+ VFIEAFIF+LIL+VGLVYAWRKGALEWS
Sbjct:    1 MFLLHEYDIFWAFLIIASLIPILAFWISALLAPVREGPEKLSSYESGIEPMGGAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGISVFIEAFIFVLILVVGLVYAWRKGALEWS 120
[Close]
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_ORYNI (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Oryza nivara GN=ndhC PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.109e-57
Identity = 106/120 (88.33%), Postives = 116/120 (96.67%), Query Frame = 1 
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MFLL++YDIFWAFLII+S+IPILAF ISA+LAP+ +GPEKLSSYESGIEPMG AWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLG+ VFIEAFIF+LIL+VGLVYAWRKGALEWS
Sbjct:    1 MFLLHEYDIFWAFLIIASLIPILAFWISALLAPVREGPEKLSSYESGIEPMGGAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGISVFIEAFIFVLILVVGLVYAWRKGALEWS 120
[Close]
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_CICAR (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Cicer arietinum GN=ndhC PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.109e-57
Identity = 108/120 (90.00%), Postives = 113/120 (94.17%), Query Frame = 1 
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MFLLY+YDIFW FLIIS +IPILAFLIS +LAPI KGPEKLSSYESGIEPMGDAWLQF+IRYYMFALVFVVFDVETVFLYPWAMSFDVLGV VFIEA IF+LILIVG VYAWRKGALEWS
Sbjct:    1 MFLLYEYDIFWTFLIISILIPILAFLISGILAPIRKGPEKLSSYESGIEPMGDAWLQFQIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEALIFVLILIVGSVYAWRKGALEWS 120
The following BLAST results are available for this feature:
BLAST of CX287253 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 441
Match NameE-valueIdentityDescription
NU3C_OENPA6.501e-5888.33NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_OENAR6.501e-5888.33NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_CERDE6.501e-5890.00NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_CALFG6.501e-5891.67NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_PELHO8.490e-5889.17NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_ORYSJ1.109e-5788.33NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_ORYSI1.109e-5788.33NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_ORYSA1.109e-5788.33NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_ORYNI1.109e-5788.33NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_CICAR1.109e-5790.00NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]

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Properties
Property NameValue
Genbank descriptionC01006E04SK Veg1 Citrus clementina cDNA clone C01006E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287253 ID=CX287253; Name=CX287253; organism=Citrus clementina; type=EST; length=587bp
GTAGGATTCCAATCGAGAAATCTTAAAACGAGACATCACAACAAACAAAC
GAAACTTTGCGGTTCGATCAAAATGAATTGTTGTTTTGATTAACCAATTA
TCGATGACTTGACAATGAATTCCAATTTGCATCGACAAATTTGGTCTATT
TTCCACATTCATAGGAGTTTGGCTATGTTTCTGCTTTACAAATATGATAT
TTTCTGGGCATTTCTAATAATATCAAGCGTTATTCCTATTTTGGCATTTC
TAATTTCCGCAGTTTTAGCCCCGATTAACAAAGGGCCAGAGAAACTTTCT
AGTTATGAATCGGGTATCGAACCAATGGGCGATGCTTGGTTACAATTTCG
AATCCGGTATTATATGTTTGCTCTAGTTTTTGTTGTTTTTGATGTTGAAA
CCGTTTTTCTTTATCCATGGGCAATGAGTTTTGATGTATTGGGGGTACCC
GTATTTATAGAAGCTTTCATTTTCATGCTTATCCTAATTGTTGGTTTAGT
TTATGCGTGGCGAAAAGGAGCATTAGAGTGGTCTTAGTTTCTGAATATTC
AGACAATAGCAAAAAAGTAAAAAAAAAAAAAAAAAAA
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