CX287253

Overview
NameCX287253
Unique NameCX287253
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length587
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_CHLSC (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Chloranthus spicatus GN=ndhC PE=3 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 1.448e-57
Identity = 109/120 (90.83%), Postives = 114/120 (95.00%), Query Frame = 1 
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MFLL++YDIFWAFLIISSVIPIL FLIS VLAPIN+GPEKLSSYESGIEPMG+AWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGV VFIEA IF+LI IVG VYAWRKGALEWS
Sbjct:    1 MFLLHEYDIFWAFLIISSVIPILVFLISGVLAPINEGPEKLSSYESGIEPMGNAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEALIFVLIPIVGSVYAWRKGALEWS 120
[Close]
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_LOTJA (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Lotus japonicus GN=ndhC PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 1.891e-57
Identity = 108/120 (90.00%), Postives = 112/120 (93.33%), Query Frame = 1 
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MFLLY+YDIFWAFLIIS  IPILAF IS  LAPINKGPEKLSSYESGIEPMGDAWLQF+IRYYMFALVFVVFDVETVFLYPWAMSFDVLG+ VFIEA IF+LILIVG VYAWRKGALEWS
Sbjct:    1 MFLLYEYDIFWAFLIISIFIPILAFTISGFLAPINKGPEKLSSYESGIEPMGDAWLQFQIRYYMFALVFVVFDVETVFLYPWAMSFDVLGISVFIEALIFVLILIVGSVYAWRKGALEWS 120
[Close]
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_HELAN (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Helianthus annuus GN=ndhC PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 1.891e-57
Identity = 107/120 (89.17%), Postives = 113/120 (94.17%), Query Frame = 1 
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MFLLY+YDIFWAFLIISS+IPIL F IS  LAP +KGPEKLSSYESGIEP+GDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGV VF+EA IF+LILIVGLVYAWRKGALEWS
Sbjct:    1 MFLLYEYDIFWAFLIISSLIPILVFFISGFLAPSSKGPEKLSSYESGIEPIGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFVEALIFVLILIVGLVYAWRKGALEWS 120
[Close]
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_GUIAB (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Guizotia abyssinica GN=ndhC PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 1.891e-57
Identity = 107/120 (89.17%), Postives = 113/120 (94.17%), Query Frame = 1 
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MFLLY+YDIFWAFLIISS+IPIL F IS  LAP +KGPEKLSSYESGIEP+GDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGV VF+EA IF+LILIVGLVYAWRKGALEWS
Sbjct:    1 MFLLYEYDIFWAFLIISSLIPILVFFISGFLAPSSKGPEKLSSYESGIEPIGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFVEALIFVLILIVGLVYAWRKGALEWS 120
[Close]
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_AGRST (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Agrostis stolonifera GN=ndhC PE=3 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 3.226e-57
Identity = 105/120 (87.50%), Postives = 115/120 (95.83%), Query Frame = 1 
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MFLL++YDIFW FLII+S+IPILAF IS +LAP+++GPEKLSSYESGIEPMG AWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGV VFIEAFIF+LIL+VGLVYAWRKGALEWS
Sbjct:    1 MFLLHEYDIFWTFLIIASLIPILAFWISGILAPVSEGPEKLSSYESGIEPMGGAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEAFIFVLILVVGLVYAWRKGALEWS 120
[Close]
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_ILLOL (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Illicium oligandrum GN=ndhC PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 4.214e-57
Identity = 108/120 (90.00%), Postives = 113/120 (94.17%), Query Frame = 1 
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MFLL++YDIFWAFL+ISSVIPILAFLIS VLAPI +GPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGV  FIEA IF+LI IVG VYAWRKGALEWS
Sbjct:    1 MFLLHEYDIFWAFLMISSVIPILAFLISGVLAPIREGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSAFIEALIFVLIPIVGSVYAWRKGALEWS 120
[Close]
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_DIOEL (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Dioscorea elephantipes GN=ndhC PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 4.214e-57
Identity = 107/120 (89.17%), Postives = 114/120 (95.00%), Query Frame = 1 
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MFLL++YDIFWAFLIISS+IPILAFLIS VL PI +G EKLSSYESGIEPMG+AWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLG+ VFIEAFIF+LI IVGLVYAWRKGALEWS
Sbjct:    1 MFLLHEYDIFWAFLIISSIIPILAFLISGVLTPIREGSEKLSSYESGIEPMGNAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGISVFIEAFIFVLIPIVGLVYAWRKGALEWS 120
[Close]
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_BRADI (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Brachypodium distachyon GN=ndhC PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 4.214e-57
Identity = 106/120 (88.33%), Postives = 115/120 (95.83%), Query Frame = 1 
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MFLL++YDIFW FLII+S+IPILAF IS +LAPI++GPEKLSSYESGIEPMG AWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGV VFIEAFIF+LIL+VGLVYAWRKGALEWS
Sbjct:    1 MFLLHEYDIFWTFLIIASLIPILAFWISGLLAPISEGPEKLSSYESGIEPMGGAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEAFIFVLILVVGLVYAWRKGALEWS 120
[Close]
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_AMBTC (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Amborella trichopoda GN=ndhC PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 4.214e-57
Identity = 107/120 (89.17%), Postives = 115/120 (95.83%), Query Frame = 1 
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MFLL++YDIFWAFL+ISSVIPILAFLIS VLAPI++GPEK+SSYESGIEPMGDAW+QFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGV VFIEA IF+LI IVG VYAWRKGALEWS
Sbjct:    1 MFLLHEYDIFWAFLMISSVIPILAFLISGVLAPISQGPEKVSSYESGIEPMGDAWIQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEALIFVLIPIVGSVYAWRKGALEWS 120
[Close]
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_OENGL (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Oenothera glazioviana GN=ndhC PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 5.503e-57
Identity = 105/120 (87.50%), Postives = 114/120 (95.00%), Query Frame = 1 
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MFLLY+YDIFWAFLIISSVIPILAF IS +LAP + GPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVET+FLYPWA+SFD+LGV VFIEA IF+LIL++GLVYAWRKGALEWS
Sbjct:    1 MFLLYEYDIFWAFLIISSVIPILAFRISGLLAPTSIGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETIFLYPWALSFDILGVSVFIEALIFVLILVLGLVYAWRKGALEWS 120
The following BLAST results are available for this feature:
BLAST of CX287253 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 441
Match NameE-valueIdentityDescription
NU3C_CHLSC1.448e-5790.83NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_LOTJA1.891e-5790.00NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_HELAN1.891e-5789.17NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_GUIAB1.891e-5789.17NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_AGRST3.226e-5787.50NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_ILLOL4.214e-5790.00NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_DIOEL4.214e-5789.17NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_BRADI4.214e-5788.33NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_AMBTC4.214e-5789.17NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_OENGL5.503e-5787.50NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]

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Properties
Property NameValue
Genbank descriptionC01006E04SK Veg1 Citrus clementina cDNA clone C01006E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287253 ID=CX287253; Name=CX287253; organism=Citrus clementina; type=EST; length=587bp
GTAGGATTCCAATCGAGAAATCTTAAAACGAGACATCACAACAAACAAAC
GAAACTTTGCGGTTCGATCAAAATGAATTGTTGTTTTGATTAACCAATTA
TCGATGACTTGACAATGAATTCCAATTTGCATCGACAAATTTGGTCTATT
TTCCACATTCATAGGAGTTTGGCTATGTTTCTGCTTTACAAATATGATAT
TTTCTGGGCATTTCTAATAATATCAAGCGTTATTCCTATTTTGGCATTTC
TAATTTCCGCAGTTTTAGCCCCGATTAACAAAGGGCCAGAGAAACTTTCT
AGTTATGAATCGGGTATCGAACCAATGGGCGATGCTTGGTTACAATTTCG
AATCCGGTATTATATGTTTGCTCTAGTTTTTGTTGTTTTTGATGTTGAAA
CCGTTTTTCTTTATCCATGGGCAATGAGTTTTGATGTATTGGGGGTACCC
GTATTTATAGAAGCTTTCATTTTCATGCTTATCCTAATTGTTGGTTTAGT
TTATGCGTGGCGAAAAGGAGCATTAGAGTGGTCTTAGTTTCTGAATATTC
AGACAATAGCAAAAAAGTAAAAAAAAAAAAAAAAAAA
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