CX287253

Overview
NameCX287253
Unique NameCX287253
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length587
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_OENEH (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Oenothera elata subsp. hookeri GN=ndhC PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 5.503e-57
Identity = 105/120 (87.50%), Postives = 114/120 (95.00%), Query Frame = 1 
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MFLLY+YDIFWAFLIISSVIPILAF IS +LAP + GPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVET+FLYPWA+SFD+LGV VFIEA IF+LIL++GLVYAWRKGALEWS
Sbjct:    1 MFLLYEYDIFWAFLIISSVIPILAFRISGLLAPTSIGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETIFLYPWALSFDILGVSVFIEALIFVLILVLGLVYAWRKGALEWS 120
[Close]
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_OENBI (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Oenothera biennis GN=ndhC PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 5.503e-57
Identity = 105/120 (87.50%), Postives = 114/120 (95.00%), Query Frame = 1 
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MFLLY+YDIFWAFLIISSVIPILAF IS +LAP + GPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVET+FLYPWA+SFD+LGV VFIEA IF+LIL++GLVYAWRKGALEWS
Sbjct:    1 MFLLYEYDIFWAFLIISSVIPILAFRISGLLAPTSIGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETIFLYPWALSFDILGVSVFIEALIFVLILVLGLVYAWRKGALEWS 120
[Close]
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_LOLPR (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Lolium perenne GN=ndhC PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 5.503e-57
Identity = 105/120 (87.50%), Postives = 115/120 (95.83%), Query Frame = 1 
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MFLL++YDIFW FLII+S+IPILAF IS +LAP+++GPEKLSSYESGIEPMG AWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGV VFIEAFIF+LIL+VGLVYAWRKGALEWS
Sbjct:    1 MFLLHEYDIFWTFLIIASLIPILAFWISGLLAPVSEGPEKLSSYESGIEPMGGAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEAFIFVLILVVGLVYAWRKGALEWS 120
[Close]
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_ACOCL (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Acorus calamus GN=ndhC PE=3 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 7.187e-57
Identity = 106/120 (88.33%), Postives = 114/120 (95.00%), Query Frame = 1 
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MFLL++YDIFWAFL+ISSVIPILAFLIS VLAP  +GPEKLSSYESGIEP+GDAW+QFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGV VF+EA IF+LILIVG VYAWRKGALEWS
Sbjct:    1 MFLLHEYDIFWAFLLISSVIPILAFLISGVLAPTREGPEKLSSYESGIEPIGDAWVQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFLEALIFVLILIVGSVYAWRKGALEWS 120
[Close]
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_ACOAM (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Acorus americanus GN=ndhC PE=3 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 7.187e-57
Identity = 106/120 (88.33%), Postives = 114/120 (95.00%), Query Frame = 1 
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MFLL++YDIFWAFL+ISSVIPILAFLIS VLAP  +GPEKLSSYESGIEP+GDAW+QFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGV VF+EA IF+LILIVG VYAWRKGALEWS
Sbjct:    1 MFLLHEYDIFWAFLLISSVIPILAFLISGVLAPTREGPEKLSSYESGIEPIGDAWVQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFLEALIFVLILIVGSVYAWRKGALEWS 120
[Close]
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_NYMAL (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Nymphaea alba GN=ndhC PE=3 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.226e-56
Identity = 105/120 (87.50%), Postives = 115/120 (95.83%), Query Frame = 1 
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MFLLY+YDIFWAFL+ISSVIPILAFLIS VLAPI++GPEKLSSYESGIEP+GDAW+QFRIRYYMFALVFVVFDVETVFLYPWA+SFD+LGV VFIEA IF+LI +VG VYAWRKGALEWS
Sbjct:    1 MFLLYEYDIFWAFLMISSVIPILAFLISGVLAPISEGPEKLSSYESGIEPIGDAWIQFRIRYYMFALVFVVFDVETVFLYPWAVSFDILGVYVFIEALIFVLIPVVGSVYAWRKGALEWS 120
[Close]
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_SORBI (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Sorghum bicolor GN=ndhC PE=3 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 1.601e-56
Identity = 104/120 (86.67%), Postives = 114/120 (95.00%), Query Frame = 1 
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MFLL++YDIFW FLII+S+IPIL F IS +LAP+++GPEKLSSYESGIEPMG AWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGV VFIEAFIF+LIL+VGLVYAWRKGALEWS
Sbjct:    1 MFLLHEYDIFWTFLIIASLIPILVFWISGLLAPVSEGPEKLSSYESGIEPMGGAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEAFIFVLILVVGLVYAWRKGALEWS 120
[Close]
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_SACOF (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Saccharum officinarum GN=ndhC PE=3 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 1.601e-56
Identity = 104/120 (86.67%), Postives = 114/120 (95.00%), Query Frame = 1 
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MFLL++YDIFW FLII+S+IPIL F IS +LAP+++GPEKLSSYESGIEPMG AWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGV VFIEAFIF+LIL+VGLVYAWRKGALEWS
Sbjct:    1 MFLLHEYDIFWTFLIIASLIPILVFWISGLLAPVSEGPEKLSSYESGIEPMGGAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEAFIFVLILVVGLVYAWRKGALEWS 120
[Close]
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_SACHY (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Saccharum hybrid GN=ndhC PE=3 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 1.601e-56
Identity = 104/120 (86.67%), Postives = 114/120 (95.00%), Query Frame = 1 
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MFLL++YDIFW FLII+S+IPIL F IS +LAP+++GPEKLSSYESGIEPMG AWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGV VFIEAFIF+LIL+VGLVYAWRKGALEWS
Sbjct:    1 MFLLHEYDIFWTFLIIASLIPILVFWISGLLAPVSEGPEKLSSYESGIEPMGGAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEAFIFVLILVVGLVYAWRKGALEWS 120
[Close]
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_MAIZE (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Zea mays GN=ndhC PE=3 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 1.601e-56
Identity = 104/120 (86.67%), Postives = 114/120 (95.00%), Query Frame = 1 
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MFLL++YDIFW FLII+S+IPIL F IS +LAP+++GPEKLSSYESGIEPMG AWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGV VFIEAFIF+LIL+VGLVYAWRKGALEWS
Sbjct:    1 MFLLHEYDIFWTFLIIASLIPILVFWISGLLAPVSEGPEKLSSYESGIEPMGGAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEAFIFVLILVVGLVYAWRKGALEWS 120
The following BLAST results are available for this feature:
BLAST of CX287253 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 441
Match NameE-valueIdentityDescription
NU3C_OENEH5.503e-5787.50NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_OENBI5.503e-5787.50NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_LOLPR5.503e-5787.50NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_ACOCL7.187e-5788.33NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_ACOAM7.187e-5788.33NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_NYMAL1.226e-5687.50NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_SORBI1.601e-5686.67NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_SACOF1.601e-5686.67NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_SACHY1.601e-5686.67NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_MAIZE1.601e-5686.67NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]

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Properties
Property NameValue
Genbank descriptionC01006E04SK Veg1 Citrus clementina cDNA clone C01006E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287253 ID=CX287253; Name=CX287253; organism=Citrus clementina; type=EST; length=587bp
GTAGGATTCCAATCGAGAAATCTTAAAACGAGACATCACAACAAACAAAC
GAAACTTTGCGGTTCGATCAAAATGAATTGTTGTTTTGATTAACCAATTA
TCGATGACTTGACAATGAATTCCAATTTGCATCGACAAATTTGGTCTATT
TTCCACATTCATAGGAGTTTGGCTATGTTTCTGCTTTACAAATATGATAT
TTTCTGGGCATTTCTAATAATATCAAGCGTTATTCCTATTTTGGCATTTC
TAATTTCCGCAGTTTTAGCCCCGATTAACAAAGGGCCAGAGAAACTTTCT
AGTTATGAATCGGGTATCGAACCAATGGGCGATGCTTGGTTACAATTTCG
AATCCGGTATTATATGTTTGCTCTAGTTTTTGTTGTTTTTGATGTTGAAA
CCGTTTTTCTTTATCCATGGGCAATGAGTTTTGATGTATTGGGGGTACCC
GTATTTATAGAAGCTTTCATTTTCATGCTTATCCTAATTGTTGGTTTAGT
TTATGCGTGGCGAAAAGGAGCATTAGAGTGGTCTTAGTTTCTGAATATTC
AGACAATAGCAAAAAAGTAAAAAAAAAAAAAAAAAAA
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