CX287253

Overview
NameCX287253
Unique NameCX287253
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length587
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_NUPAD (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Nuphar advena GN=ndhC PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 3.567e-56
Identity = 104/120 (86.67%), Postives = 115/120 (95.83%), Query Frame = 1
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MFLL++YDIFWAFL+ISSVIPILAF+IS VLAPI++GPEKLSSYESGIEP+GDAW+QFRIRYYMFALVFVVFDVETVFLYPWA+SFDVLGV VFIEA IF+LI +VG VYAWRKGALEWS
Sbjct:    1 MFLLHEYDIFWAFLMISSVIPILAFIISGVLAPISEGPEKLSSYESGIEPIGDAWIQFRIRYYMFALVFVVFDVETVFLYPWAVSFDVLGVSVFIEALIFVLIPVVGSVYAWRKGALEWS 120          
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_WHEAT (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Triticum aestivum GN=ndhC PE=3 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 6.084e-56
Identity = 103/120 (85.83%), Postives = 114/120 (95.00%), Query Frame = 1
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MFLL++YDIFW FLII+S+IPILAF IS +LAP+++GPEKLSSYESGIEPMG AW+QFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGV VFIEA IF+LIL+VGLVYAWRKGALEWS
Sbjct:    1 MFLLHEYDIFWTFLIIASLIPILAFSISGLLAPVSEGPEKLSSYESGIEPMGGAWVQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEALIFVLILVVGLVYAWRKGALEWS 120          
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_HORVU (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Hordeum vulgare GN=ndhC PE=3 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 6.084e-56
Identity = 103/120 (85.83%), Postives = 114/120 (95.00%), Query Frame = 1
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MFLL++YDIFW FLII+S+IPILAF IS +LAP+++GPEKLSSYESGIEPMG AW+QFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGV VFIEA IF+LIL+VGLVYAWRKGALEWS
Sbjct:    1 MFLLHEYDIFWTFLIIASLIPILAFSISGLLAPVSEGPEKLSSYESGIEPMGGAWVQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEALIFVLILVVGLVYAWRKGALEWS 120          
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_CYCTA (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Cycas taitungensis GN=ndhC PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 1.832e-52
Identity = 96/120 (80.00%), Postives = 111/120 (92.50%), Query Frame = 1
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MFLL++Y+ FW FL+ISS++PILAFLIS  LAPI++GPEKL+SYESGIE MGDAW+QFRIRYYMFALVFVVFDVETVFLYPWAMSFD+LG+  FIEA IF+LILIVG V+AWR+GALEWS
Sbjct:    1 MFLLFEYETFWIFLLISSLMPILAFLISRALAPISEGPEKLTSYESGIEAMGDAWIQFRIRYYMFALVFVVFDVETVFLYPWAMSFDILGISTFIEASIFVLILIVGSVHAWRRGALEWS 120          
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_ANGEV (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Angiopteris evecta GN=ndhC PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 6.961e-52
Identity = 93/120 (77.50%), Postives = 109/120 (90.83%), Query Frame = 1
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MFLL KYD FW FL+I+S+IP+ AF IS +LAP+++GPEKL+SYESGIEPMGDAW+QF+IRYYMFALVFV+FDVETVFLYPWAMSF  LG+  FIEA IF+LILI+GL+YAWRKGALEWS
Sbjct:    1 MFLLPKYDSFWLFLLIASLIPVSAFSISKILAPVSQGPEKLTSYESGIEPMGDAWIQFQIRYYMFALVFVIFDVETVFLYPWAMSFKELGISAFIEALIFVLILIIGLIYAWRKGALEWS 120          
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_CRYJA (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Cryptomeria japonica GN=ndhC PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 2.645e-51
Identity = 96/120 (80.00%), Postives = 107/120 (89.17%), Query Frame = 1
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            M+L  +YD FW +L ISS+IPILAF IS  LAPI+KG EK +SYESGIEPMGD W+QFRIRYYMFALVFVVFDVETVFLYPWAMSFD+LG+  FIEAFIF++ILIVGLVYAWRKGALEWS
Sbjct:    1 MYLFSEYDTFWIYLSISSLIPILAFSISRSLAPISKGAEKATSYESGIEPMGDTWIQFRIRYYMFALVFVVFDVETVFLYPWAMSFDILGLFTFIEAFIFVIILIVGLVYAWRKGALEWS 120          
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_ANTFO (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Anthoceros formosae GN=ndhC PE=2 SV=2)

HSP 1 Score: 201.445 bits (511), Expect = 2.645e-51
Identity = 91/120 (75.83%), Postives = 107/120 (89.17%), Query Frame = 1
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MFL+ KY+ FW FL+I+S+IP +AF IS V+API+KGPEK +SYE GIEPMGDAW+QF+IRYYMFALVFV+FDVETVFLYPWAMSF  LG+P FIE FIF+ ILI+GL+YAWRKGALEWS
Sbjct:    1 MFLVSKYNYFWIFLLIASLIPTIAFSISRVIAPISKGPEKFTSYECGIEPMGDAWIQFQIRYYMFALVFVIFDVETVFLYPWAMSFKQLGIPAFIEVFIFVFILIIGLIYAWRKGALEWS 120          
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_PSINU (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Psilotum nudum GN=ndhC PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 3.234e-49
Identity = 90/120 (75.00%), Postives = 106/120 (88.33%), Query Frame = 1
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MF+L KY  FW F++ISS+IP+LA LIS +LAP++KGPEK++SYESGIEPMGDAW+QF+IRYY FALVFV+FDVETVFLYPWAMSF  LG+  FIEA IF+ ILI+GLVYAWRK ALEWS
Sbjct:    1 MFMLPKYQTFWVFIMISSLIPLLALLISRLLAPVSKGPEKMTSYESGIEPMGDAWIQFQIRYYSFALVFVIFDVETVFLYPWAMSFYELGIFAFIEALIFVFILIIGLVYAWRKRALEWS 120          
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_PHYPA (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Physcomitrella patens GN=ndhC PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.605e-48
Identity = 93/121 (76.86%), Postives = 108/121 (89.26%), Query Frame = 1
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPIN-KGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MFLL KY+ F+ FL+++SVIPILAF IS  LAP N +GPEKL+SYESGIEPMGDAW+QF+IRYYMFALVFV+FDVETVFLYPWAMSF+ LG+  FIEA +F+ ILI+GLVYAWRKGALEWS
Sbjct:    1 MFLLPKYNSFFIFLLLASVIPILAFSISKFLAPNNTQGPEKLTSYESGIEPMGDAWIQFQIRYYMFALVFVIFDVETVFLYPWAMSFNDLGLSAFIEALVFVFILIIGLVYAWRKGALEWS 121          
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_CHAVU (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Chara vulgaris GN=ndhC PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 3.575e-48
Identity = 89/120 (74.17%), Postives = 102/120 (85.00%), Query Frame = 1
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            M  L +YD  W FL+I+S++PILAF IS +LAPI  GPEKL+SYESGIEP G AW+QF IRYYMFALVFVVFDVETVFLYPWA+SF  LG+  FIEA +F+LIL+VGLVYAWRKGALEWS
Sbjct:    1 MGTLQEYDYLWFFLVIASIVPILAFTISEILAPIRSGPEKLTSYESGIEPKGQAWIQFHIRYYMFALVFVVFDVETVFLYPWAISFHSLGISAFIEALLFILILMVGLVYAWRKGALEWS 120          
The following BLAST results are available for this feature:
BLAST of CX287253 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 441
Match NameE-valueIdentityDescription
NU3C_NUPAD3.567e-5686.67NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_WHEAT6.084e-5685.83NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_HORVU6.084e-5685.83NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_CYCTA1.832e-5280.00NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_ANGEV6.961e-5277.50NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_CRYJA2.645e-5180.00NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_ANTFO2.645e-5175.83NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_PSINU3.234e-4975.00NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_PHYPA1.605e-4876.86NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_CHAVU3.575e-4874.17NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]

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Properties
Property NameValue
Genbank descriptionC01006E04SK Veg1 Citrus clementina cDNA clone C01006E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287253 ID=CX287253; Name=CX287253; organism=Citrus clementina; type=EST; length=587bp
GTAGGATTCCAATCGAGAAATCTTAAAACGAGACATCACAACAAACAAAC
GAAACTTTGCGGTTCGATCAAAATGAATTGTTGTTTTGATTAACCAATTA
TCGATGACTTGACAATGAATTCCAATTTGCATCGACAAATTTGGTCTATT
TTCCACATTCATAGGAGTTTGGCTATGTTTCTGCTTTACAAATATGATAT
TTTCTGGGCATTTCTAATAATATCAAGCGTTATTCCTATTTTGGCATTTC
TAATTTCCGCAGTTTTAGCCCCGATTAACAAAGGGCCAGAGAAACTTTCT
AGTTATGAATCGGGTATCGAACCAATGGGCGATGCTTGGTTACAATTTCG
AATCCGGTATTATATGTTTGCTCTAGTTTTTGTTGTTTTTGATGTTGAAA
CCGTTTTTCTTTATCCATGGGCAATGAGTTTTGATGTATTGGGGGTACCC
GTATTTATAGAAGCTTTCATTTTCATGCTTATCCTAATTGTTGGTTTAGT
TTATGCGTGGCGAAAAGGAGCATTAGAGTGGTCTTAGTTTCTGAATATTC
AGACAATAGCAAAAAAGTAAAAAAAAAAAAAAAAAAA
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