CX287253

Overview
NameCX287253
Unique NameCX287253
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length587
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_MARPO (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Marchantia polymorpha GN=ndhC PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 4.371e-46
Identity = 89/120 (74.17%), Postives = 101/120 (84.17%), Query Frame = 1
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MFLL KYD F+ FL+I S   IL F +S  +APINKGPEK +SYESGIEPMG+A +QF+IRYYMFALVFV+FDVETVFLYPWAMSF   G+  FIEA IF+LILI+GLVYAWRKGALEWS
Sbjct:    1 MFLLQKYDYFFVFLLIISFFSILIFSLSKWIAPINKGPEKFTSYESGIEPMGEACIQFQIRYYMFALVFVIFDVETVFLYPWAMSFYNFGISSFIEALIFILILIIGLVYAWRKGALEWS 120          
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_ZYGCR (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Zygnema circumcarinatum GN=ndhC PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 9.736e-46
Identity = 84/120 (70.00%), Postives = 104/120 (86.67%), Query Frame = 1
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            M+ L  Y+ FWAFL+I+S++P+LA   S+++AP +K  EK +SYESGIEPMG++W+QF+IRYYMFALVFVVFDVETVFLYPWAMSF  LGV  FIEA +F+L+LI+GLVYAWRKGALEWS
Sbjct:    1 MYTLAGYESFWAFLLIASLVPVLAVGTSSLVAPSSKAAEKRTSYESGIEPMGESWIQFQIRYYMFALVFVVFDVETVFLYPWAMSFQQLGVLAFIEALVFVLVLIIGLVYAWRKGALEWS 120          
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_CHAGL (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Chaetosphaeridium globosum GN=ndhC PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 9.736e-46
Identity = 86/120 (71.67%), Postives = 100/120 (83.33%), Query Frame = 1
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            M +  KY  FW FLII ++IP LAF  S +LAP    PEK +SYESGIEP+G+AW+QF+IRYYMFALVFV+FDVET+FLYPWAMSFD LGV  FIEA IF+LIL++GLVYAWRKGALEWS
Sbjct:    1 MIVFSKYKTFWFFLIIGAIIPTLAFTTSKLLAPTVTTPEKKTSYESGIEPIGEAWIQFQIRYYMFALVFVIFDVETIFLYPWAMSFDQLGVYGFIEALIFVLILVIGLVYAWRKGALEWS 120          
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_STAPU (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Staurastrum punctulatum GN=ndhC PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 2.398e-44
Identity = 81/121 (66.94%), Postives = 104/121 (85.95%), Query Frame = 1
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAP-INKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            M +L KY+ FWAFL+I+ +IP+LA  +S ++AP  +K PEK ++YESGIEPMG++W+QF+IRYYMFALVFV+FDVETVFLYPWAMSFD LG+  F E  +F++ILI+GL+YAWRKGALEWS
Sbjct:    1 MPILPKYESFWAFLLIACLIPVLAISVSNLVAPSTSKNPEKSTTYESGIEPMGESWIQFQIRYYMFALVFVIFDVETVFLYPWAMSFDDLGIIAFAEVLVFVIILIIGLIYAWRKGALEWS 121          
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_ADICA (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Adiantum capillus-veneris GN=ndhC PE=2 SV=2)

HSP 1 Score: 174.866 bits (442), Expect = 2.652e-43
Identity = 80/119 (67.23%), Postives = 96/119 (80.67%), Query Frame = 1
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEW 531
            MFL ++YD FW FL++   IP+LAF I+   AP  +GPEK +SYESGIEP GD W++F+IRYYMFALVF VFDVETVFLYPWA SF+ LG+  F+E  +F+ ILIVGLVYAWRKGALEW
Sbjct:    1 MFLSHQYDSFWIFLLVCISIPLLAFSITRFAAPPREGPEKSTSYESGIEPKGDTWIRFQIRYYMFALVFTVFDVETVFLYPWATSFEELGLFAFVEVIVFIFILIVGLVYAWRKGALEW 119          
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_CHLAT (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Chlorokybus atmophyticus GN=ndhC PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 6.531e-42
Identity = 81/120 (67.50%), Postives = 97/120 (80.83%), Query Frame = 1
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MF+L  YD F  FLII+ +IP+LA   S ++ P   GPEK ++YESGIEPMG+AW+QF IRYYMFALVFV+FDVETVFLYPWA+SF  +G   F+EA +F+ ILIVGLVYAWRKGALEWS
Sbjct:    1 MFILKGYDSFLVFLIIACLIPVLALSASKLVRPKFGGPEKYTTYESGIEPMGEAWVQFNIRYYMFALVFVIFDVETVFLYPWAVSFAQMGFISFLEALVFLSILIVGLVYAWRKGALEWS 120          
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_SYNP2 (NAD(P)H-quinone oxidoreductase subunit 3 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=ndhC PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.114e-41
Identity = 78/120 (65.00%), Postives = 98/120 (81.67%), Query Frame = 1
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MF+L  Y+ F  FLI+SS++PILA   S +L P   GPE+ ++YESG+EP+G AW+QF IRYYMFALVFVVFDVETVFLYPWA++F+ LG+  F+EA IF+ IL++ LVYAWRKGALEWS
Sbjct:    1 MFVLSGYEYFLGFLIVSSLVPILALTASKLLRPKGGGPERKTTYESGMEPIGGAWIQFNIRYYMFALVFVVFDVETVFLYPWAVAFNQLGLLAFVEALIFIAILVIALVYAWRKGALEWS 120          
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_TRIEI (NAD(P)H-quinone oxidoreductase subunit 3 OS=Trichodesmium erythraeum (strain IMS101) GN=ndhC PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.455e-41
Identity = 78/122 (63.93%), Postives = 98/122 (80.33%), Query Frame = 1
Query:  169 LAMFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            L +F L  Y+ F  FL+ISS++PI+A   S +L P  +GPE+ ++YESG+EP+G AW+QF IRYYMFALVFV+FDVETVFLYPWA++F  LG+  FIEA IF+ IL+V LVYAWRKGALEWS
Sbjct:   14 LIVFFLSGYEYFLGFLMISSLVPIIALTASKLLRPKTRGPERRTTYESGVEPIGGAWIQFNIRYYMFALVFVIFDVETVFLYPWAVAFHQLGLLAFIEALIFIAILVVALVYAWRKGALEWS 135          
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_SYNY3 (NAD(P)H-quinone oxidoreductase subunit 3 OS=Synechocystis sp. (strain PCC 6803) GN=ndhC PE=1 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 7.221e-41
Identity = 77/120 (64.17%), Postives = 97/120 (80.83%), Query Frame = 1
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MF+L  Y+ F  FL I S++P+LA   S +L P + GPE+ ++YESG+EP+G AW+QF IRYYMFALVFVVFDVETVFLYPWA++F+ LG+  F+EA IF+ IL+V LVYAWRKGALEWS
Sbjct:    1 MFVLTGYEYFLGFLFICSLVPVLALTASKLLRPRDGGPERQTTYESGMEPIGGAWIQFNIRYYMFALVFVVFDVETVFLYPWAVAFNQLGLLAFVEALIFIAILVVALVYAWRKGALEWS 120          
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_MICAN (NAD(P)H-quinone oxidoreductase subunit 3 OS=Microcystis aeruginosa (strain NIES-843) GN=ndhC PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.232e-40
Identity = 77/120 (64.17%), Postives = 96/120 (80.00%), Query Frame = 1
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MF+L  Y+ F  FL+  S++PIL+   S VL P   GPE+ ++YESG+EP+G AW+QF IRYYMFALVFVVFDVETVFLYPWA++F+ LG+  F+EA IF+ IL+V LVYAWRKGALEWS
Sbjct:    1 MFVLKGYEYFLGFLLACSLVPILSLTASKVLRPSGGGPERRTTYESGMEPIGGAWIQFNIRYYMFALVFVVFDVETVFLYPWAVAFNQLGLLAFVEALIFIAILVVALVYAWRKGALEWS 120          
The following BLAST results are available for this feature:
BLAST of CX287253 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 441
Match NameE-valueIdentityDescription
NU3C_MARPO4.371e-4674.17NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_ZYGCR9.736e-4670.00NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_CHAGL9.736e-4671.67NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_STAPU2.398e-4466.94NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_ADICA2.652e-4367.23NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_CHLAT6.531e-4267.50NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_SYNP21.114e-4165.00NAD(P)H-quinone oxidoreductase subunit 3 OS=Synech... [more]
NU3C_TRIEI1.455e-4163.93NAD(P)H-quinone oxidoreductase subunit 3 OS=Tricho... [more]
NU3C_SYNY37.221e-4164.17NAD(P)H-quinone oxidoreductase subunit 3 OS=Synech... [more]
NU3C_MICAN1.232e-4064.17NAD(P)H-quinone oxidoreductase subunit 3 OS=Microc... [more]

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Properties
Property NameValue
Genbank descriptionC01006E04SK Veg1 Citrus clementina cDNA clone C01006E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287253 ID=CX287253; Name=CX287253; organism=Citrus clementina; type=EST; length=587bp
GTAGGATTCCAATCGAGAAATCTTAAAACGAGACATCACAACAAACAAAC
GAAACTTTGCGGTTCGATCAAAATGAATTGTTGTTTTGATTAACCAATTA
TCGATGACTTGACAATGAATTCCAATTTGCATCGACAAATTTGGTCTATT
TTCCACATTCATAGGAGTTTGGCTATGTTTCTGCTTTACAAATATGATAT
TTTCTGGGCATTTCTAATAATATCAAGCGTTATTCCTATTTTGGCATTTC
TAATTTCCGCAGTTTTAGCCCCGATTAACAAAGGGCCAGAGAAACTTTCT
AGTTATGAATCGGGTATCGAACCAATGGGCGATGCTTGGTTACAATTTCG
AATCCGGTATTATATGTTTGCTCTAGTTTTTGTTGTTTTTGATGTTGAAA
CCGTTTTTCTTTATCCATGGGCAATGAGTTTTGATGTATTGGGGGTACCC
GTATTTATAGAAGCTTTCATTTTCATGCTTATCCTAATTGTTGGTTTAGT
TTATGCGTGGCGAAAAGGAGCATTAGAGTGGTCTTAGTTTCTGAATATTC
AGACAATAGCAAAAAAGTAAAAAAAAAAAAAAAAAAA
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