CX287254

Overview
NameCX287254
Unique NameCX287254
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length493
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287254 vs. ExPASy Swiss-Prot
Match: HECD1_HUMAN (E3 ubiquitin-protein ligase HECTD1 OS=Homo sapiens GN=HECTD1 PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 3.889e-14
Identity = 51/153 (33.33%), Postives = 81/153 (52.94%), Query Frame = 1
Query:   25 TAIRPQINAFLEGFTELIPGELISIFNDKELELLISG--LPDIDLDDMRANTEYS-GYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLPEYPSKQHLEERLLLAIHE 474
            T I+ Q+ AF +GF ++ P E +S F+ +E+++++ G   P    +D+   TE   GY+  SP    F  V+ G S +++   LQF TG S +P  G + L      +   + K   +    PS +TC + L LPEY S++ + ERLL A  E
Sbjct: 2458 TGIQKQMEAFRDGFNKVFPMEKLSSFSHEEVQMILCGNQSPSWAAEDIINYTEPKLGYTRDSPGFLRFVRVLCGMSSDERKAFLQFTTGCSTLPPGGLANLH----PRLTVVRKVDATDASYPSVNTCVHYLKLPEYSSEEIMRERLLAATME 2606          
BLAST of CX287254 vs. ExPASy Swiss-Prot
Match: HYD_DROME (E3 ubiquitin-protein ligase hyd OS=Drosophila melanogaster GN=hyd PE=1 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 5.079e-14
Identity = 49/167 (29.34%), Postives = 88/167 (52.69%), Query Frame = 1
Query:   10 EHRLTTAIRPQINAFLEGFTELIPGELISIFNDKELELLISGLPDIDLDDMRANTEYSGYSAASP-----VIQWFWEVVQGFSKEDKARLLQFVTGTSKVPL--EGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLPEYPSKQHLEERLLLAIHEGNEGF 489
            E+RL  +    + A  +G  +++P   +     ++L LL++G+ DI++  + + T ++  S+  P       +WFW +V+  +  ++  L+ F TG+  +P   EGF  L  ++      I  A  S  HLP+A+TC ++L +P Y SK  L  ++L+AI   N GF
Sbjct: 2726 EYRLIKSQEKALEALKDGVFDVLPDNSMINLTAEDLRLLLNGVGDINVSTLISYTTFNDESSEGPDKLLKFKKWFWSIVEKMNIMERQDLVYFWTGSPALPASEEGFQPLPSVT------IRPADDS--HLPTANTCISRLYIPLYSSKSILRSKMLMAIKSKNFGF 2884          
BLAST of CX287254 vs. ExPASy Swiss-Prot
Match: HERC6_HUMAN (Probable E3 ubiquitin-protein ligase HERC6 OS=Homo sapiens GN=HERC6 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 1.930e-13
Identity = 45/161 (27.95%), Postives = 79/161 (49.07%), Query Frame = 1
Query:   10 EHRLTTAIRPQINAFLEGFTELIPGELISIFNDKELELLISGLPDIDLDDMRANTEYS-GYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLPEYPSKQHLEERLLLAIHEGNEGF 489
            ++    +++     F  GF  +   E++  F  +EL   I G  D D      N++Y  GY  + P IQ FW+     + ++K + L F+TG  ++   G   ++ +     F+  + +   DH P++ TC N L LP+Y + + +EE L +AI+  N GF
Sbjct:  861 DYIFNVSVKAVYEEFQRGFYRVCEKEILRHFYPEELMTAIIGNTDYDWKQFEQNSKYEQGYQKSHPTIQLFWKAFHKLTLDEKKKFLFFLTGRDRLHARGIQKMEIV-----FRCPETFSERDH-PTSITCHNILSLPKYSTMERMEEALQVAIN-NNRGF 1014          
BLAST of CX287254 vs. ExPASy Swiss-Prot
Match: UPL3_ARATH (E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana GN=UPL3 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.134e-12
Identity = 50/180 (27.78%), Postives = 86/180 (47.78%), Query Frame = 1
Query:    1 VVAEHRLTTAIRPQINAFLEGFTELIPGELISIFNDKELELLISGLPDI-DLDDMRANTEYS-GYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSI---------------DHLPSAHTCFNQLDLPEYPSKQHLEERLLLAIHEGNEGF 489
            +V +  +   +  QI AF  GF ++     + IF   EL+ L+ G  ++ +++ +  + ++  GY+A SP I    E++   + + +    QFVTG  ++P  G + L     + K  I + + S                D LPS  TC N L LP Y +K+ + ++LL AI+EG   F
Sbjct: 1711 LVVDATVKRGVTRQIEAFRSGFNQVFDITSLQIFTPSELDYLLCGRRELWEVETLAEHIKFDHGYNAKSPAIINLLEIMGELTADQQRAFCQFVTGAPRLPPGGLAVL-----NPKLTIVRKHSSTSSAAANGAGASETADDDLPSVMTCANYLKLPPYSTKEIMYKKLLYAINEGQGSF 1885          
BLAST of CX287254 vs. ExPASy Swiss-Prot
Match: HERC5_HUMAN (Probable E3 ubiquitin-protein ligase HERC5 OS=Homo sapiens GN=HERC5 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.787e-12
Identity = 45/156 (28.85%), Postives = 82/156 (52.56%), Query Frame = 1
Query:   28 AIRPQINAFLEGFTELIPGELISIFNDKELELLISGLPDIDLDDMRANTEYS-GYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLPEYPSKQHLEERLLLAIHEGNEGFG 492
            +++     F  GF ++   ++I +F+ +EL+ +I G  D D      N  Y  GY+++ P I  FW+     + E+K + L F+TGT ++ ++  + ++       F   +++   D +  A TCF+ L LP+Y + + +EE L  AI+  N GFG
Sbjct:  876 SVKAVYEEFRRGFYKMCDEDIIKLFHPEELKDVIVGNTDYDWKTFEKNARYEPGYNSSHPTIVMFWKAFHKLTLEEKKKFLVFLTGTDRLQMKDLNNMK-----ITFCCPESWNERDPI-RALTCFSVLFLPKYSTMETVEEALQEAIN-NNRGFG 1024          
The following BLAST results are available for this feature:
BLAST of CX287254 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
HECD1_HUMAN3.889e-1433.33E3 ubiquitin-protein ligase HECTD1 OS=Homo sapiens... [more]
HYD_DROME5.079e-1429.34E3 ubiquitin-protein ligase hyd OS=Drosophila mela... [more]
HERC6_HUMAN1.930e-1327.95Probable E3 ubiquitin-protein ligase HERC6 OS=Homo... [more]
UPL3_ARATH2.134e-1227.78E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis th... [more]
HERC5_HUMAN2.787e-1228.85Probable E3 ubiquitin-protein ligase HERC5 OS=Homo... [more]

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Properties
Property NameValue
Genbank descriptionC01006E05SK Veg1 Citrus clementina cDNA clone C01006E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287254 ID=CX287254; Name=CX287254; organism=Citrus clementina; type=EST; length=493bp
GTAGTTGCGGAGCATCGTTTGACGACTGCTATTCGGCCTCAAATAAATGC
TTTTCTGGAGGGATTTACCGAACTAATTCCTGGGGAGTTGATATCTATCT
TCAATGACAAGGAATTAGAATTATTGATTAGTGGGCTTCCGGATATTGAT
TTGGATGACATGAGGGCAAATACGGAATATTCTGGATATAGTGCTGCATC
TCCTGTTATCCAGTGGTTTTGGGAGGTTGTTCAAGGGTTCAGCAAGGAGG
ATAAGGCTCGTCTTCTGCAGTTTGTGACTGGCACCTCAAAGGTGCCCTTG
GAAGGTTTCAGTGCACTTCAAGGAATTTCAGGTTCACAGAAGTTTCAAAT
ACACAAGGCATATGGCAGCATAGATCATTTGCCTTCTGCTCATACTTGTT
TCAATCAATTAGATTTGCCGGAATATCCTTCTAAGCAGCATCTAGAGGAG
AGACTGCTGCTTGCAATTCATGAAGGCAATGAAGGGTTTGGAT
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