CX287263

Overview
NameCX287263
Unique NameCX287263
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length544
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13920 contig Ccv1_Contig13920:967..1510. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287263 vs. ExPASy Swiss-Prot
Match: PAPA2_CARPA (Chymopapain OS=Carica papaya PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 6.961e-13
Identity = 32/59 (54.24%), Postives = 42/59 (71.19%), Query Frame = 3
Query:    3 TSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 179
            T LDH VTAVGYGT +G +Y I+KNSWG +WGE GY+R++R  +G   G CG+   + Y
Sbjct:  289 TKLDHAVTAVGYGTSDGKNYIIIKNSWGPNWGEKGYMRLKRQ-SGNSQGTCGVYKSSYY 346          
BLAST of CX287263 vs. ExPASy Swiss-Prot
Match: CATL_DROME (Cathepsin L OS=Drosophila melanogaster GN=Cp1 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.551e-12
Identity = 33/59 (55.93%), Postives = 44/59 (74.58%), Query Frame = 3
Query:    6 SLDHGVTAVGYGT-ENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 179
            +LDHGV  VG+GT E+G DYW+VKNSWG++WG+ G+I+M RN       +CGIA  +SY
Sbjct:  314 NLDHGVLVVGFGTDESGEDYWLVKNSWGTTWGDKGFIKMLRN----KENQCGIASASSY 368          
BLAST of CX287263 vs. ExPASy Swiss-Prot
Match: ANAN_ANACO (Ananain OS=Ananas comosus GN=AN1 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.551e-12
Identity = 31/60 (51.67%), Postives = 44/60 (73.33%), Query Frame = 3
Query:    3 TSLDHGVTAVGYGTEN-GADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 179
            T L+H +  +GYG ++ G  +WIV+NSWG+ WGEGGYIR+ R+V+ +  G CGIAM+  Y
Sbjct:  275 TRLNHAIVIIGYGQDSSGKKFWIVRNSWGAGWGEGGYIRLARDVSSSF-GLCGIAMDPLY 333          
BLAST of CX287263 vs. ExPASy Swiss-Prot
Match: CATLL_PHACE (Cathepsin L-like proteinase OS=Phaedon cochleariae PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.645e-12
Identity = 31/58 (53.45%), Postives = 38/58 (65.52%), Query Frame = 3
Query:    6 SLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 179
            +L HGV  VGYG ENG  YWI+KN+WG+ WGE GYIR+ R+        CG+   ASY
Sbjct:  267 NLHHGVNVVGYGIENGQKYWIIKNTWGADWGESGYIRLIRDT----DHSCGVEKMASY 320          
BLAST of CX287263 vs. ExPASy Swiss-Prot
Match: P34_SOYBN (P34 probable thiol protease OS=Glycine max PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.455e-12
Identity = 32/57 (56.14%), Postives = 39/57 (68.42%), Query Frame = 3
Query:    9 LDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 179
            ++H V  VGYG+ +G DYWI KNSWG  WGE GYI ++RN  G L G CG+   ASY
Sbjct:  299 INHFVLLVGYGSADGVDYWIAKNSWGFDWGEDGYIWIQRN-TGNLLGVCGMNYFASY 354          
BLAST of CX287263 vs. ExPASy Swiss-Prot
Match: MDO1_PSEMR (Macrodontain-1 OS=Pseudananas macrodontes PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.512e-12
Identity = 31/54 (57.41%), Postives = 43/54 (79.63%), Query Frame = 3
Query:    6 SLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAM 167
            SL+H +T +GYG ++   YWIV+NSWGSSWG+GGY+R+ R+V+ +  G CGIAM
Sbjct:  156 SLNHAITIIGYGRDS---YWIVRNSWGSSWGQGGYVRIRRDVSHS-GGVCGIAM 205          
BLAST of CX287263 vs. ExPASy Swiss-Prot
Match: CRUST_PANBO (Crustapain OS=Pandalus borealis GN=Cys PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.512e-12
Identity = 34/57 (59.65%), Postives = 39/57 (68.42%), Query Frame = 3
Query:   12 DHGVTAVGYGTE-NGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 179
            +H VTAVGYGT+ NG DYWIVKNSWG+ WGE GYI+M RN        C IA  + Y
Sbjct:  268 NHAVTAVGYGTDANGGDYWIVKNSWGAWWGESGYIKMARN----RDNNCAIATYSVY 320          
BLAST of CX287263 vs. ExPASy Swiss-Prot
Match: CYSP3_SOLLC (Cysteine proteinase 3 OS=Solanum lycopersicum GN=CYP-3 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.893e-12
Identity = 30/57 (52.63%), Postives = 37/57 (64.91%), Query Frame = 3
Query:    9 LDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 179
            ++H V AVGYG ENG  YW++KNSWG+ WGE GY +ME          CG+A  ASY
Sbjct:  301 VNHAVLAVGYGVENGTPYWLIKNSWGADWGEDGYFKMEMG-----KNMCGVATCASY 352          
BLAST of CX287263 vs. ExPASy Swiss-Prot
Match: CATL1_CHICK (Cathepsin L1 (Fragments) OS=Gallus gallus GN=CTSL1 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.893e-12
Identity = 33/57 (57.89%), Postives = 36/57 (63.16%), Query Frame = 3
Query:    9 LDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 179
            LDHGV  VGYG E G  YWIVKNSWG  WG+ GYI M ++        CGIA  ASY
Sbjct:  163 LDHGVLVVGYGFEGGKKYWIVKNSWGEKWGDKGYIYMAKD----RKNHCGIATAASY 215          
BLAST of CX287263 vs. ExPASy Swiss-Prot
Match: ORYC_ORYSJ (Oryzain gamma chain OS=Oryza sativa subsp. japonica GN=Os09g0442300 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 7.697e-12
Identity = 30/57 (52.63%), Postives = 37/57 (64.91%), Query Frame = 3
Query:    9 LDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 179
            ++H V AVGYG ENG  YW++KNSWG+ WG+ GY +ME          CGIA  ASY
Sbjct:  307 VNHAVLAVGYGVENGVPYWLIKNSWGADWGDNGYFKMEMG-----KNMCGIATCASY 358          
The following BLAST results are available for this feature:
BLAST of CX287263 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
PAPA2_CARPA6.961e-1354.24Chymopapain OS=Carica papaya PE=1 SV=2[more]
CATL_DROME1.551e-1255.93Cathepsin L OS=Drosophila melanogaster GN=Cp1 PE=1... [more]
ANAN_ANACO1.551e-1251.67Ananain OS=Ananas comosus GN=AN1 PE=1 SV=2[more]
CATLL_PHACE2.645e-1253.45Cathepsin L-like proteinase OS=Phaedon cochleariae... [more]
P34_SOYBN3.455e-1256.14P34 probable thiol protease OS=Glycine max PE=1 SV... [more]
MDO1_PSEMR4.512e-1257.41Macrodontain-1 OS=Pseudananas macrodontes PE=1 SV=... [more]
CRUST_PANBO4.512e-1259.65Crustapain OS=Pandalus borealis GN=Cys PE=1 SV=1[more]
CYSP3_SOLLC5.893e-1252.63Cysteine proteinase 3 OS=Solanum lycopersicum GN=C... [more]
CATL1_CHICK5.893e-1257.89Cathepsin L1 (Fragments) OS=Gallus gallus GN=CTSL1... [more]
ORYC_ORYSJ7.697e-1252.63Oryzain gamma chain OS=Oryza sativa subsp. japonic... [more]

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Properties
Property NameValue
Genbank descriptionC01006F02SK Veg1 Citrus clementina cDNA clone C01006F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287263 ID=CX287263; Name=CX287263; organism=Citrus clementina; type=EST; length=544bp
GGACATCTCTGGACCATGGTGTTACTGCTGTTGGATATGGCACAGAAAAT
GGAGCTGATTACTGGATTGTGAAGAATTCATGGGGCAGTAGCTGGGGAGA
GGGTGGCTATATTAGGATGGAGCGTAACGTGGCTGGCACTCTCACGGGCA
AGTGTGGAATTGCCATGGAGGCCTCATATCCCATAAAGAAAGGCCAAAAT
CCTCCCAACCCCGGACCGTCTCCTCCATCTCCAACAAAGCCTCCTGCTGT
GTGTGACAATTATTACTCTTGCCCTGAGAGCAACACTTGCTGCTGTGTCT
TTGAGTATGGTAACTCTTGCTTTGCATGGGGATGCTGCCCGCTTGAGGCT
GCCACCTGCTGTGATGACCACTATAGCTGCTGCCCACATGACTATCCCAT
CTGTAATGTTCGTGCTGGGACCTGCTTGATGAGCAAGGACAACCCATTGG
GAGTGAGGGCATTGCGACGCACCCCTGCTAAACCTTACTGGGCTCATGGA
AATCAAGGTGGAAGTAGCAGTGCTTAATTATAGTTGGCACTGTA
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