CX287277
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX287277 vs. ExPASy Swiss-Prot
Match: RBS7_ACECL (Ribulose bisphosphate carboxylase small chain 7, chloroplastic OS=Acetabularia cliftonii GN=RBCS-7 PE=3 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 3.911e-27 Identity = 56/121 (46.28%), Postives = 76/121 (62.81%), Query Frame = 1 Query: 202 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHHSSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISF 546 M VW P K FET SYLPPL+DE + K++ Y+L + W PCLEF ++ + E+ G Y D RYWTMWKLPM+GCTD +QVL ++ K +P +++R++ FD RQVQ F Sbjct: 44 MMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSDMQACTKAFPDAYIRLVCFDANRQVQICGF 164
BLAST of CX287277 vs. ExPASy Swiss-Prot
Match: RBS4_ACEAT (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Acetabularia acetabulum GN=RBCS-4 PE=2 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 3.911e-27 Identity = 60/146 (41.10%), Postives = 83/146 (56.85%), Query Frame = 1 Query: 127 SAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHHSSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISF 546 +A P + S +N R M VW P K FET S+LPPL+DE + K++ Y+L + W PCLEF ++ + E+ G Y D RYWTMWKLPM+GCTD +QVL E+ +P +++R++ FD RQVQ F Sbjct: 20 AATPKVVTSKRSFASTVANKNRE--MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTNAFPDAYIRLVCFDANRQVQISGF 163
BLAST of CX287277 vs. ExPASy Swiss-Prot
Match: RBS2_ACEAT (Ribulose bisphosphate carboxylase small chain 2, chloroplastic (Fragment) OS=Acetabularia acetabulum GN=RBCS-2 PE=2 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 3.911e-27 Identity = 56/121 (46.28%), Postives = 76/121 (62.81%), Query Frame = 1 Query: 202 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHHSSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISF 546 M VW P K FET S+LPPL+DE + K++ Y+L + W PCLEF ++ + E+ G Y D RYWTMWKLPM+GCTD +QVL E+ K +P +++R++ FD RQVQ F Sbjct: 34 MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILTNSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGF 154
BLAST of CX287277 vs. ExPASy Swiss-Prot
Match: RBS1_ACEAT (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Acetabularia acetabulum GN=RBCS-1 PE=2 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 3.911e-27 Identity = 56/121 (46.28%), Postives = 76/121 (62.81%), Query Frame = 1 Query: 202 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHHSSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISF 546 M VW P K FET S+LPPL+DE + K++ Y+L + W PCLEF ++ + E+ G Y D RYWTMWKLPM+GCTD +QVL E+ K +P +++R++ FD RQVQ F Sbjct: 43 MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILTNSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGF 163
BLAST of CX287277 vs. ExPASy Swiss-Prot
Match: RBS5_ACEAT (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Acetabularia acetabulum GN=RBCS-5 PE=2 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 1.486e-26 Identity = 55/121 (45.45%), Postives = 75/121 (61.98%), Query Frame = 1 Query: 202 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHHSSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISF 546 M VW P K FET S+LPPL+DE + K++ Y+L + W PCLEF ++ + E+ G Y D RYWTMWKLPM+GCTD +QVL E+ +P +++R++ FD RQVQ F Sbjct: 44 MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTNAFPDAYIRLVCFDANRQVQISGF 164
BLAST of CX287277 vs. ExPASy Swiss-Prot
Match: RBS1_ACECL (Ribulose bisphosphate carboxylase small chain 1 (Fragment) OS=Acetabularia cliftonii GN=RBCS-1 PE=2 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 1.302e-22 Identity = 48/106 (45.28%), Postives = 68/106 (64.15%), Query Frame = 1 Query: 247 SYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHHSSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISF 546 SYLPPL+DE + K++ Y+L + W PCLEF ++ + ++ G Y D RYWTMWKLPM+GCTD +QVL E+ K +P +++R++ FD RQVQ F Sbjct: 2 SYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNDNCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGF 107
BLAST of CX287277 vs. ExPASy Swiss-Prot
Match: RBS_PROHO (Ribulose bisphosphate carboxylase small chain OS=Prochlorothrix hollandica GN=cbbS PE=3 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 7.144e-21 Identity = 45/106 (42.45%), Postives = 68/106 (64.15%), Query Frame = 1 Query: 229 KKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISF 546 +++ETLSYLPPLSD+ + ++I Y++R G+IP +EF + YWTMWKLP++ T +VL EV E + EYP+ ++R++GFDN +Q Q +SF Sbjct: 8 RRYETLSYLPPLSDQQIARQIEYMVREGYIPAVEFNEDSDATTC------------YWTMWKLPLFHATSTQEVLGEVRECRTEYPNCYIRVVGFDNIKQCQSVSF 101
BLAST of CX287277 vs. ExPASy Swiss-Prot
Match: RBS_SYNP6 (Ribulose bisphosphate carboxylase small chain OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=cbbS PE=1 SV=3) HSP 1 Score: 97.4413 bits (241), Expect = 4.630e-20 Identity = 46/106 (43.40%), Postives = 64/106 (60.38%), Query Frame = 1 Query: 229 KKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISF 546 ++FET SYLPPLSD + +I Y++ G+ P +EF HS+P + YWTMWKLP++ C QVL EV E + EY ++R+ GFDN +Q Q +SF Sbjct: 10 RRFETFSYLPPLSDRQIAAQIEYMIEQGFHPLIEFN---------EHSNPEEF---YWTMWKLPLFDCKSPQQVLDEVRECRSEYGDCYIRVAGFDNIKQCQTVSF 103
BLAST of CX287277 vs. ExPASy Swiss-Prot
Match: RBS_SYNP2 (Ribulose bisphosphate carboxylase small chain OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=cbbS PE=3 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 4.630e-20 Identity = 45/106 (42.45%), Postives = 68/106 (64.15%), Query Frame = 1 Query: 229 KKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISF 546 K++ETLSYLPPLSD+ + +++ Y++ G+IP +EFE K HH WT+WKLP++ + A +VL EV E + EY ++R++GFDN +Q Q +SF Sbjct: 8 KRYETLSYLPPLSDQQIARQVQYMMDQGYIPGIEFE--KDPTPELHH----------WTLWKLPLFNASSAQEVLNEVRECRSEYSDCYIRVVGFDNIKQCQTVSF 101
BLAST of CX287277 vs. ExPASy Swiss-Prot
Match: RBS_SYNY3 (Ribulose bisphosphate carboxylase small chain OS=Synechocystis sp. (strain PCC 6803) GN=cbbS PE=3 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 7.898e-20 Identity = 47/106 (44.34%), Postives = 69/106 (65.09%), Query Frame = 1 Query: 229 KKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISF 546 +++ETLSYLPPL+D+ + K++ +LL G+IP +EFE + E H +WTMWKLP +G A +VL EV E + E P+ ++R+IGFDN +Q Q +SF Sbjct: 8 RRYETLSYLPPLTDQQIAKQVEFLLDQGFIPGVEFEEDP---QPETH---------FWTMWKLPFFGGATANEVLAEVRECRSENPNCYIRVIGFDNIKQCQTVSF 101 The following BLAST results are available for this feature:
BLAST of CX287277 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 127
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Sequences
The
following sequences are available for this feature:
EST sequence >CX287277 ID=CX287277; Name=CX287277; organism=Citrus clementina; type=EST; length=546bpback to top |