CX287280

Overview
NameCX287280
Unique NameCX287280
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length581
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287280 vs. ExPASy Swiss-Prot
Match: CATV_NPVHZ (Viral cathepsin OS=Heliothis zea nuclear polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.578e-24
Identity = 68/183 (37.16%), Postives = 98/183 (53.55%), Query Frame = 1
Query:   25 GLNRFADLTNEEYRSMYLGARFG-AKRTSLKSKRSDRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEDDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAV-ANQPVSVAIE 567
            G+N+F+D T +E      G     ++  +L   R  +  P +   LPD  DWR    V  +KDQG CGSCWAF  I  +E    I    LI LSEQ+L+DCD   + GCNGGLM  AF+ ++  GG++TE DYPY+  +  C T       V ++      + DE  L++ V    PV++A++
Sbjct:  113 GVNKFSDKTPDEVLHSNTGFFLNLSQHYTLCENRIVKGAPDI--RLPDYYDWRDTNKVTPIKDQGVCGSCWAFVAIGNIESQYAIRHNKLIDLSEQQLLDCD-EVDLGCNGGLMHLAFQELLLMGGVETEADYPYQGSEQMC-TLDNRKIAVKLNSCFKYDIRDENKLKELVYTTGPVAIAVD 291          
BLAST of CX287280 vs. ExPASy Swiss-Prot
Match: ACP2_ENTHI (Cysteine proteinase ACP2 (Fragment) OS=Entamoeba histolytica GN=ACP2 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.578e-24
Identity = 68/183 (37.16%), Postives = 103/183 (56.28%), Query Frame = 1
Query:   37 FADLTNEEYRSMYLGARFGAKRTSLKSKRSDRYLPRV---GEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEG---INKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEDDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIE 567
            FA +TNEEYR++            LKSKR+     +V       P+SVDWRK+G V  ++DQ  CGSC+ F ++AA+EG   I K    + + LSE+ +     + N GCNGGL    +++II++ G+  E DYPY   D +C T  K+ + +T   Y  VP N+E  L+ A++   + V+I+
Sbjct:   59 FAAMTNEEYRTL------------LKSKRTTEENGQVKYLNIQAPESVDWRKEGKVTPLRDQAQCGSCYTFGSLAALEGRLLIEKGGDANTLDLSEEHMQCTRDNGNNGCNGGLGSNVYDYIIEH-GVAKESDYPYTGSDSTCKTNVKSFRKIT--GYTKVPRNNEAELKAALSQGLLDVSID 226          
BLAST of CX287280 vs. ExPASy Swiss-Prot
Match: CATV_NPVCD (Viral cathepsin OS=Choristoneura fumiferana defective polyhedrosis virus GN=Vcath PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.691e-24
Identity = 65/180 (36.11%), Postives = 98/180 (54.44%), Query Frame = 1
Query:   28 LNRFADLTNEEYRSMYLGARFGAKRTSLKSKRSDRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEDDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIE 567
            +N+F+DL+ +E  S Y G     +  +         L R  +  P   DWR+   V  VK+QG+CG+CWAF+T+ ++E    I    LI+LSEQ+L+DCD   + GC+GGL+  A+E +++ GGI  E+DYPY+A +G C        V     Y  V + +EK         P+ VAI+
Sbjct:   73 INKFSDLSKDETISKYTGLSLPLQNQNFCEVV---VLNRPPDKGPLEFDWRRLNKVTSVKNQGTCGACWAFATLGSLESQFAIKHDQLINLSEQQLIDCD-FVDMGCDGGLLHTAYEAVMNMGGIQAENDYPYEANNGDCRLNAAKFVVKVKKCYRYVLMFEEKLKDLLRIVGPLPVAID 248          
BLAST of CX287280 vs. ExPASy Swiss-Prot
Match: CATV_NPVOP (Viral cathepsin OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.336e-23
Identity = 65/185 (35.14%), Postives = 95/185 (51.35%), Query Frame = 1
Query:   13 TYKVGLNRFADLTNEEYRSMYLGARFGAKRTSLKSKRSDRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEDDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIE 567
            T +  +N+F+DL+ EE  S Y G     +  +         L R  +  P   DWR+   V  VK+QG CG+CWAF+T+ ++E    I    LI+LSEQ+ +DCD   N GC+GGL+  AFE  ++ GG+  E DYPY+  +G C        V        + + +EK      A  P+ VAI+
Sbjct:   68 TAQYEINKFSDLSKEEAISKYTGLSLPHQTQNFCEVV---ILDRPPDRGPLEFDWRQFNKVTSVKNQGVCGACWAFATLGSLESQFAIKYNRLINLSEQQFIDCD-RVNAGCDGGLLHTAFESAMEMGGVQMESDYPYETANGQCRINPNRFVVGVRSCRRYIVMFEEKLKDLLRAVGPIPVAID 248          
BLAST of CX287280 vs. ExPASy Swiss-Prot
Match: CATV_NPVBS (Viral cathepsin OS=Buzura suppressaria nuclear polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.744e-23
Identity = 63/185 (34.05%), Postives = 97/185 (52.43%), Query Frame = 1
Query:   28 LNRFADLTNEEYRSMYLGARFGAKRTSLKSKRSDRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEDDYPYKAIDGSCDTYRKNAKVVTIDD-YEDVPLNDEKALQKAVANQPVSVAIEGGGM 579
            +N+FADL+  E  S Y G     + T+          P  G   P + DWR++  V  +K+Q +CG+CWAF+T+A++E    I     I LSEQ+++DCD   + GC+GGL+  AFE +I  G +  E +YPY  ++  C+       VV +   Y  V   +EK      A  P+ +AI+  G+
Sbjct:   76 INKFADLSKNEIISKYTGLNMPVQTTNFCKTIVIDQPPGKG---PLNFDWRQQNKVTSIKNQKACGACWAFATLASIESQYAIKNNVHIDLSEQQMIDCD-YVDMGCDGGLLHTAFEQMIQMGELVQEHEYPYAGVNKPCELRGDETGVVKVKGCYRYVVFREEKLKDLLRAVGPIPMAIDASGI 256          
BLAST of CX287280 vs. ExPASy Swiss-Prot
Match: CATV_NPVEP (Viral cathepsin OS=Epiphyas postvittana nucleopolyhedrovirus GN=VCATH PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.477e-22
Identity = 57/147 (38.78%), Postives = 83/147 (56.46%), Query Frame = 1
Query:    7 NRTYKVGLNRFADLTNEEYRSMYLGARFGAKRTSLKSKRSDRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEDDYPYKAIDGSC 447
            N T    +N+F+DL+ +E  + Y G        +          P  G   P   DWR+   +  VK+QG CG+CWAF+T+A++E    I    LI+LSEQ+++DCD S + GC GGL+  AFE II  GG+  E+DYPY++ +  C
Sbjct:   65 NDTAVYKINKFSDLSKDETIAKYTGLSLPLHTQNFCEVVVLDRPPGKG---PLEFDWRRFNKITSVKNQGMCGACWAFATLASLESQFAIAHDRLINLSEQQMIDCD-SVDVGCEGGLLHTAFEAIISMGGVQIENDYPYESSNNYC 207          
BLAST of CX287280 vs. ExPASy Swiss-Prot
Match: CATV_NPVMC (Viral cathepsin OS=Mamestra configurata nucleopolyhedrovirus GN=VCATH PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.290e-22
Identity = 67/193 (34.72%), Postives = 98/193 (50.78%), Query Frame = 1
Query:    4 ENRTYKVGLNRFADLTNEEYRSMYLGARFGAK-----RTSLKSKRSDRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEDDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIE 567
            ++  YK+  NRFAD+T  E  + + G   G        T +      R  P        + DWR    V  VKDQG CG+CWAF+ + A+E    I    LI L+EQ+LVDCD   + GC+GGL+  A+E I+  GG++ E DYPYKA+   C        V   + Y  V L++E+         P+++A++
Sbjct:   79 DSAVYKI--NRFADMTKNEVVNRHTGLASGDIGANFCETIVVDGPGQRQRPA-------NFDWRNYNKVTSVKDQGMCGACWAFAGLGALESQYAIKYDRLIDLAEQQLVDCD-FVDMGCDGGLIHTAYEQIMHIGGVEQEYDYPYKAVRLPCAVKPHKFAVGVRNCYRYVLLSEERLEDLLRHVGPIAIAVD 261          
BLAST of CX287280 vs. ExPASy Swiss-Prot
Match: CATV_NPVSE (Viral cathepsin OS=Spodoptera exigua nuclear polyhedrosis virus (strain US) GN=VCATH PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.058e-20
Identity = 64/188 (34.04%), Postives = 92/188 (48.94%), Query Frame = 1
Query:    4 ENRTYKVGLNRFADLTNEEYRSMYLGARFGAKRTSLKSKRSDRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEDDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIE 567
            ++  YK+  NRFAD+   E    + G   G     L    +           P S DWR    +  VKDQG CG+CW F+++ A+E    I    LI LSEQ+LVDCD   + GC+GGL+  A+E I+  GG++ E DY YKA    C            + Y  V LN+E+         P+++A++
Sbjct:   79 DSAVYKI--NRFADMPKNEIVIRHTGLASG--ELGLNFCETIVVDGPAQRQRPVSFDWRSMNKITSVKDQGMCGACWRFASLGALESQYAIKYDRLIDLSEQQLVDCD-FVDMGCDGGLIHTAYEQIMKMGGVEQEFDYSYKAERQPCALKPHKFATGVRNCYRYVILNEERLEDLLRYVGPIAIAVD 261          
BLAST of CX287280 vs. ExPASy Swiss-Prot
Match: CYSP_PLAVS (Cysteine proteinase OS=Plasmodium vivax (strain Salvador I) PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.079e-20
Identity = 62/172 (36.05%), Postives = 99/172 (57.56%), Query Frame = 1
Query:    7 NRTYKVGLNRFADLTNEEYRSMY---------LGARFGAKRTSLKSKRSDRYLPRVGEA-----LPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGI-NKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEDDYPYKAIDG-SCDTYRKNAKV 474
            N+ YK+ +N+F+D + +++ S +         L  ++    +S+ + +    +     A     +P+ +D+R+KG V E KDQG CGSCWAF+++  VE +  K    ++++LSEQE+VDC +  N GC+GG   Y+F + I+N GI   DDY YKA+D   C  YR   KV
Sbjct:  275 NQMYKMKVNQFSDYSKKDFESYFRKLVPIPDHLKKKYVVPFSSMNNGKGKNVVTSSSGANLLADVPEILDYREKGIVHEPKDQGLCGSCWAFASVGNVECMYAKEHNKTILTLSEQEVVDC-SKLNFGCDGGHPFYSFIYAIEN-GICMGDDYKYKAMDNLFCLNYRCKNKV 444          
BLAST of CX287280 vs. ExPASy Swiss-Prot
Match: CATW_MOUSE (Cathepsin W OS=Mus musculus GN=Ctsw PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.079e-20
Identity = 61/189 (32.28%), Postives = 101/189 (53.44%), Query Frame = 1
Query:   13 TYKVGLNRFADLTNEEYRSMYLGARFGAKRTSLKSKRSDRYLPRVGEALPDSVDWRK-KGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEDDYPYKAIDGSCDTYR----KNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAI 564
            T + G   F+DLT EE+  +Y G     +RT   +K+ +      GE++P + DWRK K  ++ VK+QGSC  CWA +    ++ + +I     + +S QEL+DC+   N GCNGG +  A+  +++N G+ +E DYP++   G    +R    K  KV  I D+  +  N++        + P++V I
Sbjct:   81 TAEFGETPFSDLTEEEFGQLY-GQERSPERTPNMTKKVESNT--WGESVPRTCDWRKAKNIISSVKNQGSCKCCWAMAAADNIQALWRIKHQQFVDVSVQELLDCERCGN-GCNGGFVWDAYLTVLNNSGLASEKDYPFQ---GDRKPHRCLAKKYKKVAWIQDFTMLSNNEQAIAHYLAVHGPITVTI 262          
The following BLAST results are available for this feature:
BLAST of CX287280 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158
Match NameE-valueIdentityDescription
CATV_NPVHZ1.578e-2437.16Viral cathepsin OS=Heliothis zea nuclear polyhedro... [more]
ACP2_ENTHI1.578e-2437.16Cysteine proteinase ACP2 (Fragment) OS=Entamoeba h... [more]
CATV_NPVCD2.691e-2436.11Viral cathepsin OS=Choristoneura fumiferana defect... [more]
CATV_NPVOP1.336e-2335.14Viral cathepsin OS=Orgyia pseudotsugata multicapsi... [more]
CATV_NPVBS1.744e-2334.05Viral cathepsin OS=Buzura suppressaria nuclear pol... [more]
CATV_NPVEP1.477e-2238.78Viral cathepsin OS=Epiphyas postvittana nucleopoly... [more]
CATV_NPVMC3.290e-2234.72Viral cathepsin OS=Mamestra configurata nucleopoly... [more]
CATV_NPVSE1.058e-2034.04Viral cathepsin OS=Spodoptera exigua nuclear polyh... [more]
CYSP_PLAVS3.079e-2036.05Cysteine proteinase OS=Plasmodium vivax (strain Sa... [more]
CATW_MOUSE3.079e-2032.28Cathepsin W OS=Mus musculus GN=Ctsw PE=2 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01006G09SK Veg1 Citrus clementina cDNA clone C01006G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287280 ID=CX287280; Name=CX287280; organism=Citrus clementina; type=EST; length=581bp
GCAGAGAACCGGACCTACAAGGTTGGGTTGAACCGGTTTGCTGATTTGAC
CAACGAGGAGTACCGGTCCATGTATCTGGGTGCACGCTTTGGTGCTAAAA
GGACTTCCTTGAAATCAAAGAGGAGCGATCGTTATCTGCCACGTGTCGGC
GAGGCGTTGCCGGACTCTGTTGATTGGAGGAAGAAAGGAGCTGTCGCTGA
AGTTAAAGATCAAGGAAGCTGTGGGAGTTGCTGGGCATTTTCAACCATTG
CTGCTGTAGAGGGTATAAACAAGATTGTTACAGGTAGCCTGATCTCACTA
TCCGAGCAGGAGTTGGTGGATTGTGATACATCATATAATGAAGGATGTAA
TGGTGGTTTGATGGACTATGCATTCGAGTTCATTATTGATAATGGAGGTA
TTGACACAGAAGATGATTACCCCTACAAAGCCATTGATGGTAGCTGTGAC
ACATATCGGAAAAATGCCAAAGTAGTTACAATTGATGACTATGAAGATGT
TCCCCTAAATGACGAGAAAGCTTTGCAAAAGGCAGTTGCAAATCAACCCG
TGAGTGTTGCGATTGAAGGAGGTGGCATGGC
back to top