CX287284
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_PASMU (Carbamoyl-phosphate synthase large chain OS=Pasteurella multocida GN=carB PE=3 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 6.679e-39 Identity = 63/97 (64.95%), Postives = 69/97 (71.13%), Query Frame = 2 Query: 5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295 L V GLMN Q+A+ G Y+LE NPRASRTVPFVSKA G PLAK AA VM+G+SL G EVIP SVKEAV PF KF G D +LGPEM STG Sbjct: 814 LGVKGLMNVQFAVQ-DGVIYVLEVNPRASRTVPFVSKATGRPLAKIAARVMAGESLKAQGIQGEVIPPFYSVKEAVFPFIKFPGVDTVLGPEMRSTG 909 HSP 2 Score: 68.5514 bits (166), Expect = 6.679e-39 Identity = 34/79 (43.04%), Postives = 51/79 (64.56%), Query Frame = 1 Query: 295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531 EVMG+ +F AF KAQ+ A +++P +G VFLS+ND KP L IA + G+ + +T GTA F+ G+AV+ + K+ Sbjct: 910 EVMGVGTTFAEAFLKAQLGANERIPKTGKVFLSVNDADKPRLLPIARQLQESGYGLCATLGTAKFLREHGVAVQIINKV 988
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_MYXXD (Carbamoyl-phosphate synthase large chain OS=Myxococcus xanthus (strain DK 1622) GN=carB PE=3 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 3.265e-38 Identity = 60/97 (61.86%), Postives = 71/97 (73.20%), Query Frame = 2 Query: 5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295 L V GLMN Q+AI Y+LE NPRASRTVPF+SKA G +AK AAL M GK+L +LG T+E KHV+VKE+V PF +F G DV+LGPEM STG Sbjct: 821 LGVVGLMNVQFAIQGK-TIYILEVNPRASRTVPFISKATGVAMAKIAALCMVGKTLKELGVTQEPEFKHVAVKESVFPFARFAGVDVILGPEMKSTG 916 HSP 2 Score: 68.1662 bits (165), Expect = 3.265e-38 Identity = 36/79 (45.57%), Postives = 51/79 (64.56%), Query Frame = 1 Query: 295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531 EVMG+ + AFAK+Q+AAG KLP SG VF+S+ D KP + +A +GF++V TSGT ++ KGI + V K+ Sbjct: 917 EVMGLANDYASAFAKSQLAAGVKLPKSGKVFISVKDDDKPAVVDLARRLRSMGFSLVVTSGTHTYLATKGIEAQVVQKV 995
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_HAEDU (Carbamoyl-phosphate synthase large chain OS=Haemophilus ducreyi GN=carB PE=3 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 9.403e-38 Identity = 62/97 (63.92%), Postives = 70/97 (72.16%), Query Frame = 2 Query: 5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295 L V GLMN Q+A+ Y+LE NPRASRTVPFVSKA G+PLAK AALVM+GKSL + T E+IP + SVKEAV PF KF G D L PEM STG Sbjct: 814 LGVKGLMNVQFAVQNE-TIYVLEVNPRASRTVPFVSKATGNPLAKIAALVMAGKSLAEQNATTEIIPPYFSVKEAVFPFIKFPGVDTTLSPEMRSTG 909 HSP 2 Score: 63.929 bits (154), Expect = 9.403e-38 Identity = 31/79 (39.24%), Postives = 50/79 (63.29%), Query Frame = 1 Query: 295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531 EVMG SF A+ KAQ+ AG+++P +G VFLS+ D KP + R+A+ G+ + +T GTA ++ G+ V+ + K+ Sbjct: 910 EVMGTGQSFAEAYYKAQLGAGERIPSTGKVFLSIADEDKPQIIRVAQYLQAEGYGLCATIGTAQYLRENGVGVQIINKV 988
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_RHILO (Carbamoyl-phosphate synthase large chain OS=Rhizobium loti GN=carB PE=3 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 2.077e-37 Identity = 59/102 (57.84%), Postives = 70/102 (68.63%), Query Frame = 2 Query: 5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDL-----GFTKEVIPKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295 LNV GLMN QYAI G Y+LE NPRASRTVPFV+K IG P+AK AA +M+G++L D P H++VKEAV PF +F G D+LLGPEM STG Sbjct: 910 LNVGGLMNVQYAIK-DGTVYVLEVNPRASRTVPFVAKTIGRPIAKIAARIMAGETLEDAFAHYGAMPDPRNPGHIAVKEAVFPFARFPGVDILLGPEMRSTG 1010 HSP 2 Score: 68.1662 bits (165), Expect = 2.077e-37 Identity = 32/79 (40.51%), Postives = 50/79 (63.29%), Query Frame = 1 Query: 295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531 EVMG+D F +AFAK+Q+ AG LP SGT+F+S+ D K + + +GF +++TSGT F+ G+ E++ K+ Sbjct: 1011 EVMGLDRDFALAFAKSQLGAGVDLPRSGTLFVSVRDEDKKGILPAVKRLAGLGFKVLATSGTQRFLAENGVVAEKINKV 1089
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_RALSO (Carbamoyl-phosphate synthase large chain OS=Ralstonia solanacearum GN=carB PE=3 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 2.708e-37 Identity = 61/100 (61.00%), Postives = 71/100 (71.00%), Query Frame = 2 Query: 5 LNVCGLMNCQYAITTSGD---AYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295 LNV GLMN Q+AI G Y+LE NPRASRTVP+VSKA G LAK AA M+G+SL++ G EV+P + SVKEAV PF KF G D +LGPEM STG Sbjct: 824 LNVIGLMNVQFAIQQKGGEDIVYVLEVNPRASRTVPYVSKATGISLAKVAARCMAGQSLDEQGIHDEVVPSYYSVKEAVFPFNKFPGVDPVLGPEMRSTG 923 HSP 2 Score: 63.5438 bits (153), Expect = 2.708e-37 Identity = 33/79 (41.77%), Postives = 47/79 (59.49%), Query Frame = 1 Query: 295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531 EVMG+ +F A K+Q+AAG +LP GTV +++ D KP +A +G+ IV+T GTA +E GI V V K+ Sbjct: 924 EVMGVGRTFGEALFKSQLAAGSRLPEKGTVLMTVKDSDKPRAIEVARTLHTLGYPIVATRGTASAIEAAGIPVRVVNKV 1002
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_METMA (Carbamoyl-phosphate synthase large chain OS=Methanosarcina mazei GN=carB PE=3 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 3.528e-37 Identity = 60/97 (61.86%), Postives = 73/97 (75.26%), Query Frame = 2 Query: 5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295 L V GL+N Q A G ++LEANPR+SRT+PFVSKA+G PLAK AA V++G SL DLG+T E PKHVS+KE +LPF+K G D +LGPEM STG Sbjct: 813 LRVKGLINIQMA-EKGGKVFVLEANPRSSRTIPFVSKAVGIPLAKIAAKVIAGHSLKDLGYTDEPKPKHVSIKEVLLPFDKLPGADPVLGPEMKSTG 908 HSP 2 Score: 60.4622 bits (145), Expect = 3.528e-37 Identity = 31/79 (39.24%), Postives = 46/79 (58.23%), Query Frame = 1 Query: 295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531 EVMG+D F A+ KA++AA LPL+G VFLS+ + KP L A G ++ T GT +++ GI ++ V K+ Sbjct: 909 EVMGVDYDFGRAYYKAELAADNLLPLTGKVFLSIRNADKPELVEAARKLQAAGLELMGTRGTVNYLAQHGIFMDTVKKV 987
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_METAC (Carbamoyl-phosphate synthase large chain OS=Methanosarcina acetivorans GN=carB PE=3 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 5.986e-37 Identity = 58/97 (59.79%), Postives = 73/97 (75.26%), Query Frame = 2 Query: 5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295 L V GL+N Q A G ++LEANPR+SRT+PFVSKA+G PLAK AA V++G SL ++G+T E PKHVS+KE +LPF+K G D +LGPEM STG Sbjct: 813 LRVKGLINIQMA-EKGGKVFVLEANPRSSRTIPFVSKAVGLPLAKIAARVIAGHSLKEMGYTDEPKPKHVSIKEVLLPFDKLPGADPVLGPEMKSTG 908 HSP 2 Score: 62.003 bits (149), Expect = 5.986e-37 Identity = 31/79 (39.24%), Postives = 47/79 (59.49%), Query Frame = 1 Query: 295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531 EVMGID F A+ KA++AA LPL+G VFLS+ + KP L +A G ++ T GT +++ G+ ++ V K+ Sbjct: 909 EVMGIDYDFGRAYYKAELAADNLLPLTGKVFLSIRNADKPELVEVARKLQAAGLELMGTRGTVNYLAQHGVFMDTVKKV 987
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_LEPIN (Carbamoyl-phosphate synthase large chain OS=Leptospira interrogans GN=carB PE=3 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 7.795e-37 Identity = 58/97 (59.79%), Postives = 68/97 (70.10%), Query Frame = 2 Query: 5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295 L V GL+N QYA+ Y++E NPRASRTVPFVSKA+GHP+ KYA +M G+SL L KE+ VSVKE VLPF KF G D +LGPEM STG Sbjct: 848 LQVKGLINIQYAVKNE-ILYIIEVNPRASRTVPFVSKALGHPIVKYATRIMMGESLKSLPLPKEMEFSQVSVKEVVLPFNKFPGVDTILGPEMRSTG 943 HSP 2 Score: 63.1586 bits (152), Expect = 7.795e-37 Identity = 33/79 (41.77%), Postives = 48/79 (60.76%), Query Frame = 1 Query: 295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531 EVMGI + AF K+Q AG +LP GTVF+S+ND TK L + ++GF +++TSGT F+ GI ++ K+ Sbjct: 944 EVMGIASTAGEAFLKSQYMAGDELPSQGTVFVSINDKTKAELLSYIKDLSELGFNLIATSGTHKFLSDNGILSSKINKV 1022
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_LEPIC (Carbamoyl-phosphate synthase large chain OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=carB PE=3 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 7.795e-37 Identity = 58/97 (59.79%), Postives = 68/97 (70.10%), Query Frame = 2 Query: 5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295 L V GL+N QYA+ Y++E NPRASRTVPFVSKA+GHP+ KYA +M G+SL L KE+ VSVKE VLPF KF G D +LGPEM STG Sbjct: 848 LQVKGLINIQYAVKNE-ILYIIEVNPRASRTVPFVSKALGHPIVKYATRIMMGESLKSLPLPKEMEFSQVSVKEVVLPFNKFPGVDTILGPEMRSTG 943 HSP 2 Score: 63.1586 bits (152), Expect = 7.795e-37 Identity = 33/79 (41.77%), Postives = 48/79 (60.76%), Query Frame = 1 Query: 295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531 EVMGI + AF K+Q AG +LP GTVF+S+ND TK L + ++GF +++TSGT F+ GI ++ K+ Sbjct: 944 EVMGIASTAGEAFLKSQYMAGDELPSQGTVFVSINDKTKAELLSYIKDLSELGFNLIATSGTHKFLSDNGILSSKINKV 1022
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_ACIBL (Carbamoyl-phosphate synthase large chain OS=Acidobacteria bacterium (strain Ellin345) GN=carB PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 7.795e-37 Identity = 52/109 (47.71%), Postives = 66/109 (60.55%), Query Frame = 2 Query: 5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVS------------VKEAVLPFEKFQGWDVLLGPEMISTG 295 L V GLMN QYAI Y++E NPRASRTVP+VSKA G P+AK AA +M+G+ L +E +P+++ VK V P+ KF G D +LGPEM STG Sbjct: 829 LKVIGLMNVQYAIQRE-KVYVIEVNPRASRTVPYVSKATGVPMAKIAARLMTGRKL------REFLPQNIEQGADLATGNCYYVKSPVFPWGKFPGVDTVLGPEMKSTG 930 HSP 2 Score: 87.4261 bits (215), Expect = 7.795e-37 Identity = 46/79 (58.23%), Postives = 57/79 (72.15%), Query Frame = 1 Query: 295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531 EVMG+ +F AFAKAQ+AAGQKLP GTVF+SLN K H +A+ F+D+GF IV+T GTA +E GI VERV K+ Sbjct: 931 EVMGVADNFGEAFAKAQLAAGQKLPTKGTVFISLNKRDKQHAAALAKKFVDLGFKIVATHGTADEMEDGGIEVERVFKV 1009 The following BLAST results are available for this feature:
BLAST of CX287284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 231
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX287284 ID=CX287284; Name=CX287284; organism=Citrus clementina; type=EST; length=533bpback to top |