CX287284

Overview
NameCX287284
Unique NameCX287284
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length533
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_PASMU (Carbamoyl-phosphate synthase large chain OS=Pasteurella multocida GN=carB PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 6.679e-39
Identity = 63/97 (64.95%), Postives = 69/97 (71.13%), Query Frame = 2
Query:    5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295
            L V GLMN Q+A+   G  Y+LE NPRASRTVPFVSKA G PLAK AA VM+G+SL   G   EVIP   SVKEAV PF KF G D +LGPEM STG
Sbjct:  814 LGVKGLMNVQFAVQ-DGVIYVLEVNPRASRTVPFVSKATGRPLAKIAARVMAGESLKAQGIQGEVIPPFYSVKEAVFPFIKFPGVDTVLGPEMRSTG 909          

HSP 2 Score: 68.5514 bits (166), Expect = 6.679e-39
Identity = 34/79 (43.04%), Postives = 51/79 (64.56%), Query Frame = 1
Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531
            EVMG+  +F  AF KAQ+ A +++P +G VFLS+ND  KP L  IA    + G+ + +T GTA F+   G+AV+ + K+
Sbjct:  910 EVMGVGTTFAEAFLKAQLGANERIPKTGKVFLSVNDADKPRLLPIARQLQESGYGLCATLGTAKFLREHGVAVQIINKV 988          
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_MYXXD (Carbamoyl-phosphate synthase large chain OS=Myxococcus xanthus (strain DK 1622) GN=carB PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.265e-38
Identity = 60/97 (61.86%), Postives = 71/97 (73.20%), Query Frame = 2
Query:    5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295
            L V GLMN Q+AI      Y+LE NPRASRTVPF+SKA G  +AK AAL M GK+L +LG T+E   KHV+VKE+V PF +F G DV+LGPEM STG
Sbjct:  821 LGVVGLMNVQFAIQGK-TIYILEVNPRASRTVPFISKATGVAMAKIAALCMVGKTLKELGVTQEPEFKHVAVKESVFPFARFAGVDVILGPEMKSTG 916          

HSP 2 Score: 68.1662 bits (165), Expect = 3.265e-38
Identity = 36/79 (45.57%), Postives = 51/79 (64.56%), Query Frame = 1
Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531
            EVMG+   +  AFAK+Q+AAG KLP SG VF+S+ D  KP +  +A     +GF++V TSGT  ++  KGI  + V K+
Sbjct:  917 EVMGLANDYASAFAKSQLAAGVKLPKSGKVFISVKDDDKPAVVDLARRLRSMGFSLVVTSGTHTYLATKGIEAQVVQKV 995          
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_HAEDU (Carbamoyl-phosphate synthase large chain OS=Haemophilus ducreyi GN=carB PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 9.403e-38
Identity = 62/97 (63.92%), Postives = 70/97 (72.16%), Query Frame = 2
Query:    5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295
            L V GLMN Q+A+      Y+LE NPRASRTVPFVSKA G+PLAK AALVM+GKSL +   T E+IP + SVKEAV PF KF G D  L PEM STG
Sbjct:  814 LGVKGLMNVQFAVQNE-TIYVLEVNPRASRTVPFVSKATGNPLAKIAALVMAGKSLAEQNATTEIIPPYFSVKEAVFPFIKFPGVDTTLSPEMRSTG 909          

HSP 2 Score: 63.929 bits (154), Expect = 9.403e-38
Identity = 31/79 (39.24%), Postives = 50/79 (63.29%), Query Frame = 1
Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531
            EVMG   SF  A+ KAQ+ AG+++P +G VFLS+ D  KP + R+A+     G+ + +T GTA ++   G+ V+ + K+
Sbjct:  910 EVMGTGQSFAEAYYKAQLGAGERIPSTGKVFLSIADEDKPQIIRVAQYLQAEGYGLCATIGTAQYLRENGVGVQIINKV 988          
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_RHILO (Carbamoyl-phosphate synthase large chain OS=Rhizobium loti GN=carB PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.077e-37
Identity = 59/102 (57.84%), Postives = 70/102 (68.63%), Query Frame = 2
Query:    5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDL-----GFTKEVIPKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295
            LNV GLMN QYAI   G  Y+LE NPRASRTVPFV+K IG P+AK AA +M+G++L D             P H++VKEAV PF +F G D+LLGPEM STG
Sbjct:  910 LNVGGLMNVQYAIK-DGTVYVLEVNPRASRTVPFVAKTIGRPIAKIAARIMAGETLEDAFAHYGAMPDPRNPGHIAVKEAVFPFARFPGVDILLGPEMRSTG 1010          

HSP 2 Score: 68.1662 bits (165), Expect = 2.077e-37
Identity = 32/79 (40.51%), Postives = 50/79 (63.29%), Query Frame = 1
Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531
            EVMG+D  F +AFAK+Q+ AG  LP SGT+F+S+ D  K  +    +    +GF +++TSGT  F+   G+  E++ K+
Sbjct: 1011 EVMGLDRDFALAFAKSQLGAGVDLPRSGTLFVSVRDEDKKGILPAVKRLAGLGFKVLATSGTQRFLAENGVVAEKINKV 1089          
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_RALSO (Carbamoyl-phosphate synthase large chain OS=Ralstonia solanacearum GN=carB PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.708e-37
Identity = 61/100 (61.00%), Postives = 71/100 (71.00%), Query Frame = 2
Query:    5 LNVCGLMNCQYAITTSGD---AYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295
            LNV GLMN Q+AI   G     Y+LE NPRASRTVP+VSKA G  LAK AA  M+G+SL++ G   EV+P + SVKEAV PF KF G D +LGPEM STG
Sbjct:  824 LNVIGLMNVQFAIQQKGGEDIVYVLEVNPRASRTVPYVSKATGISLAKVAARCMAGQSLDEQGIHDEVVPSYYSVKEAVFPFNKFPGVDPVLGPEMRSTG 923          

HSP 2 Score: 63.5438 bits (153), Expect = 2.708e-37
Identity = 33/79 (41.77%), Postives = 47/79 (59.49%), Query Frame = 1
Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531
            EVMG+  +F  A  K+Q+AAG +LP  GTV +++ D  KP    +A     +G+ IV+T GTA  +E  GI V  V K+
Sbjct:  924 EVMGVGRTFGEALFKSQLAAGSRLPEKGTVLMTVKDSDKPRAIEVARTLHTLGYPIVATRGTASAIEAAGIPVRVVNKV 1002          
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_METMA (Carbamoyl-phosphate synthase large chain OS=Methanosarcina mazei GN=carB PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.528e-37
Identity = 60/97 (61.86%), Postives = 73/97 (75.26%), Query Frame = 2
Query:    5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295
            L V GL+N Q A    G  ++LEANPR+SRT+PFVSKA+G PLAK AA V++G SL DLG+T E  PKHVS+KE +LPF+K  G D +LGPEM STG
Sbjct:  813 LRVKGLINIQMA-EKGGKVFVLEANPRSSRTIPFVSKAVGIPLAKIAAKVIAGHSLKDLGYTDEPKPKHVSIKEVLLPFDKLPGADPVLGPEMKSTG 908          

HSP 2 Score: 60.4622 bits (145), Expect = 3.528e-37
Identity = 31/79 (39.24%), Postives = 46/79 (58.23%), Query Frame = 1
Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531
            EVMG+D  F  A+ KA++AA   LPL+G VFLS+ +  KP L   A      G  ++ T GT +++   GI ++ V K+
Sbjct:  909 EVMGVDYDFGRAYYKAELAADNLLPLTGKVFLSIRNADKPELVEAARKLQAAGLELMGTRGTVNYLAQHGIFMDTVKKV 987          
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_METAC (Carbamoyl-phosphate synthase large chain OS=Methanosarcina acetivorans GN=carB PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 5.986e-37
Identity = 58/97 (59.79%), Postives = 73/97 (75.26%), Query Frame = 2
Query:    5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295
            L V GL+N Q A    G  ++LEANPR+SRT+PFVSKA+G PLAK AA V++G SL ++G+T E  PKHVS+KE +LPF+K  G D +LGPEM STG
Sbjct:  813 LRVKGLINIQMA-EKGGKVFVLEANPRSSRTIPFVSKAVGLPLAKIAARVIAGHSLKEMGYTDEPKPKHVSIKEVLLPFDKLPGADPVLGPEMKSTG 908          

HSP 2 Score: 62.003 bits (149), Expect = 5.986e-37
Identity = 31/79 (39.24%), Postives = 47/79 (59.49%), Query Frame = 1
Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531
            EVMGID  F  A+ KA++AA   LPL+G VFLS+ +  KP L  +A      G  ++ T GT +++   G+ ++ V K+
Sbjct:  909 EVMGIDYDFGRAYYKAELAADNLLPLTGKVFLSIRNADKPELVEVARKLQAAGLELMGTRGTVNYLAQHGVFMDTVKKV 987          
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_LEPIN (Carbamoyl-phosphate synthase large chain OS=Leptospira interrogans GN=carB PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 7.795e-37
Identity = 58/97 (59.79%), Postives = 68/97 (70.10%), Query Frame = 2
Query:    5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295
            L V GL+N QYA+      Y++E NPRASRTVPFVSKA+GHP+ KYA  +M G+SL  L   KE+    VSVKE VLPF KF G D +LGPEM STG
Sbjct:  848 LQVKGLINIQYAVKNE-ILYIIEVNPRASRTVPFVSKALGHPIVKYATRIMMGESLKSLPLPKEMEFSQVSVKEVVLPFNKFPGVDTILGPEMRSTG 943          

HSP 2 Score: 63.1586 bits (152), Expect = 7.795e-37
Identity = 33/79 (41.77%), Postives = 48/79 (60.76%), Query Frame = 1
Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531
            EVMGI  +   AF K+Q  AG +LP  GTVF+S+ND TK  L    +   ++GF +++TSGT  F+   GI   ++ K+
Sbjct:  944 EVMGIASTAGEAFLKSQYMAGDELPSQGTVFVSINDKTKAELLSYIKDLSELGFNLIATSGTHKFLSDNGILSSKINKV 1022          
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_LEPIC (Carbamoyl-phosphate synthase large chain OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=carB PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 7.795e-37
Identity = 58/97 (59.79%), Postives = 68/97 (70.10%), Query Frame = 2
Query:    5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295
            L V GL+N QYA+      Y++E NPRASRTVPFVSKA+GHP+ KYA  +M G+SL  L   KE+    VSVKE VLPF KF G D +LGPEM STG
Sbjct:  848 LQVKGLINIQYAVKNE-ILYIIEVNPRASRTVPFVSKALGHPIVKYATRIMMGESLKSLPLPKEMEFSQVSVKEVVLPFNKFPGVDTILGPEMRSTG 943          

HSP 2 Score: 63.1586 bits (152), Expect = 7.795e-37
Identity = 33/79 (41.77%), Postives = 48/79 (60.76%), Query Frame = 1
Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531
            EVMGI  +   AF K+Q  AG +LP  GTVF+S+ND TK  L    +   ++GF +++TSGT  F+   GI   ++ K+
Sbjct:  944 EVMGIASTAGEAFLKSQYMAGDELPSQGTVFVSINDKTKAELLSYIKDLSELGFNLIATSGTHKFLSDNGILSSKINKV 1022          
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_ACIBL (Carbamoyl-phosphate synthase large chain OS=Acidobacteria bacterium (strain Ellin345) GN=carB PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.795e-37
Identity = 52/109 (47.71%), Postives = 66/109 (60.55%), Query Frame = 2
Query:    5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVS------------VKEAVLPFEKFQGWDVLLGPEMISTG 295
            L V GLMN QYAI      Y++E NPRASRTVP+VSKA G P+AK AA +M+G+ L      +E +P+++             VK  V P+ KF G D +LGPEM STG
Sbjct:  829 LKVIGLMNVQYAIQRE-KVYVIEVNPRASRTVPYVSKATGVPMAKIAARLMTGRKL------REFLPQNIEQGADLATGNCYYVKSPVFPWGKFPGVDTVLGPEMKSTG 930          

HSP 2 Score: 87.4261 bits (215), Expect = 7.795e-37
Identity = 46/79 (58.23%), Postives = 57/79 (72.15%), Query Frame = 1
Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531
            EVMG+  +F  AFAKAQ+AAGQKLP  GTVF+SLN   K H   +A+ F+D+GF IV+T GTA  +E  GI VERV K+
Sbjct:  931 EVMGVADNFGEAFAKAQLAAGQKLPTKGTVFISLNKRDKQHAAALAKKFVDLGFKIVATHGTADEMEDGGIEVERVFKV 1009          
The following BLAST results are available for this feature:
BLAST of CX287284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
CARB_PASMU6.679e-3964.95Carbamoyl-phosphate synthase large chain OS=Pasteu... [more]
CARB_MYXXD3.265e-3861.86Carbamoyl-phosphate synthase large chain OS=Myxoco... [more]
CARB_HAEDU9.403e-3863.92Carbamoyl-phosphate synthase large chain OS=Haemop... [more]
CARB_RHILO2.077e-3757.84Carbamoyl-phosphate synthase large chain OS=Rhizob... [more]
CARB_RALSO2.708e-3761.00Carbamoyl-phosphate synthase large chain OS=Ralsto... [more]
CARB_METMA3.528e-3761.86Carbamoyl-phosphate synthase large chain OS=Methan... [more]
CARB_METAC5.986e-3759.79Carbamoyl-phosphate synthase large chain OS=Methan... [more]
CARB_LEPIN7.795e-3759.79Carbamoyl-phosphate synthase large chain OS=Leptos... [more]
CARB_LEPIC7.795e-3759.79Carbamoyl-phosphate synthase large chain OS=Leptos... [more]
CARB_ACIBL7.795e-3747.71Carbamoyl-phosphate synthase large chain OS=Acidob... [more]

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Properties
Property NameValue
Genbank descriptionC01006H01SK Veg1 Citrus clementina cDNA clone C01006H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287284 ID=CX287284; Name=CX287284; organism=Citrus clementina; type=EST; length=533bp
TAGATTGAATGTGTGTGGACTCATGAATTGTCAGTATGCAATTACAACAT
CTGGGGATGCTTACTTGCTTGAGGCAAATCCCCGTGCTTCCCGTACCGTC
CCATTTGTGTCAAAAGCAATTGGGCACCCATTGGCCAAATATGCTGCTCT
TGTTATGTCGGGGAAGTCACTTAACGATTTAGGTTTCACAAAAGAGGTGA
TCCCCAAGCATGTGTCTGTTAAGGAAGCAGTTCTGCCCTTTGAGAAGTTC
CAAGGCTGGGATGTGCTGTTAGGGCCTGAGATGATAAGCACTGGGAGGTG
ATGGGTATAGACATGTCCTTCCCTATTGCATTTGCCAAGGCTCAAATTGC
TGCAGGGCAGAAGCTACCACTTTCAGGCACTGTGTTCCTCAGCTTAAATG
ACTTGACAAAGCCCCATCTTGAGAGAATTGCAGAGGCATTCTTAGATATA
GGATTCACGATTGTTTCAACTTCTGGGACAGCTCACTTTGTTGAATTAAA
AGGTATTGCTGTGGAAAGAGTGCTGAAGATGCA
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