CX287284 | Citrus Genome Database

Overview


Name	CX287284
Unique Name	CX287284
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	533

Libraries


Library Name	Type
Veg1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_BACCQ (Carbamoyl-phosphate synthase large chain OS=Bacillus cereus (strain Q1) GN=carB PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.181e-23
Identity = 45/99 (45.45%), Postives = 59/99 (59.60%), Query Frame = 2

Query:    5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIP--KHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295
            LN+ GL+N Q+ +      Y++E NPRASRTVPF+SK  G P+A  A  V+ G++L + G+     P  K V VK  V  F K +  D  LGPEM STG
Sbjct:  811 LNIVGLLNIQFVVFKD-QVYVIEVNPRASRTVPFLSKITGVPMANVATKVILGQNLVEQGYGTGYHPEEKEVYVKAPVFSFAKLRSVDTTLGPEMKSTG 908

HSP 2 Score: 51.6026 bits (122), Expect = 1.181e-23
Identity = 27/79 (34.18%), Postives = 47/79 (59.49%), Query Frame = 1

Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531
            EVMG D++   A  K  +A+G  +P  G+V +++ D  K     IA+ F +IG+ +++T+GTA  +  + I V+ V K+
Sbjct:  909 EVMGKDLTLEKALYKGLVASGINIPTHGSVIITVADKDKEEAMEIAKRFHEIGYNLLATAGTAQSLAEQNIPVQVVNKI 987

[Close]

BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_BACC7 (Carbamoyl-phosphate synthase large chain OS=Bacillus cereus (strain AH187) GN=carB PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.181e-23
Identity = 45/99 (45.45%), Postives = 59/99 (59.60%), Query Frame = 2

Query:    5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIP--KHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295
            LN+ GL+N Q+ +      Y++E NPRASRTVPF+SK  G P+A  A  V+ G++L + G+     P  K V VK  V  F K +  D  LGPEM STG
Sbjct:  811 LNIVGLLNIQFVVFKD-QVYVIEVNPRASRTVPFLSKITGVPMANVATKVILGQNLVEQGYGTGYHPEEKEVYVKAPVFSFAKLRSVDTTLGPEMKSTG 908

HSP 2 Score: 51.6026 bits (122), Expect = 1.181e-23
Identity = 27/79 (34.18%), Postives = 47/79 (59.49%), Query Frame = 1

Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531
            EVMG D++   A  K  +A+G  +P  G+V +++ D  K     IA+ F +IG+ +++T+GTA  +  + I V+ V K+
Sbjct:  909 EVMGKDLTLEKALYKGLVASGINIPTHGSVIITVADKDKEEAMEIAKRFHEIGYNLLATAGTAQSLAEQNIPVQVVNKI 987

[Close]

BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_BACC1 (Carbamoyl-phosphate synthase large chain OS=Bacillus cereus (strain ATCC 10987) GN=carB PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.181e-23
Identity = 45/99 (45.45%), Postives = 59/99 (59.60%), Query Frame = 2

Query:    5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIP--KHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295
            LN+ GL+N Q+ +  +   Y++E NPRASRTVPF+SK  G P+A  A  V+ G+ L + G+     P  K V VK  V  F K +  D  LGPEM STG
Sbjct:  811 LNIVGLLNIQFVVFEN-QVYVIEVNPRASRTVPFLSKITGVPMANVATKVILGQDLVEQGYGTGYHPEEKEVYVKAPVFSFAKLRSVDTTLGPEMKSTG 908

HSP 2 Score: 51.6026 bits (122), Expect = 1.181e-23
Identity = 27/79 (34.18%), Postives = 47/79 (59.49%), Query Frame = 1

Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531
            EVMG D++   A  K  +A+G  +P  G+V +++ D  K     IA+ F +IG+ +++T+GTA  +  + I V+ V K+
Sbjct:  909 EVMGKDLTLEKALYKGLVASGINIPTHGSVIITVADKDKEEAMEIAKRFHEIGYNLLATAGTAQSLTEQNIPVQVVNKI 987

[Close]

BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_LISMO (Carbamoyl-phosphate synthase large chain OS=Listeria monocytogenes GN=carB PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.181e-23
Identity = 42/99 (42.42%), Postives = 61/99 (61.62%), Query Frame = 2

Query:    5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIP--KHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295
            LN+ G++N QY +    + +++E NPR+SRT PF+SK    P+A  A  V+ G++L DLG+T  + P  + + VK  V  F K +  D  LGPEM STG
Sbjct:  811 LNIIGMLNIQYVVDGE-EVFVIEVNPRSSRTAPFLSKITEIPMANVATRVILGENLIDLGYTPGLAPEKQEIFVKVPVFSFAKLRSVDTSLGPEMKSTG 908

HSP 2 Score: 51.9878 bits (123), Expect = 1.181e-23
Identity = 31/79 (39.24%), Postives = 45/79 (56.96%), Query Frame = 1

Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531
            EVMG D++   A  K  +A+G  +   GTV L++ D  K     +A+ F  IGFTI++T GTA  +E   I V +V K+
Sbjct:  909 EVMGKDVTLEKALYKGFVASGTTMHDYGTVLLTVADRDKEEAVELAKRFNRIGFTIMATKGTASTLEEASIPVSQVKKI 987

[Close]

BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_LISMF (Carbamoyl-phosphate synthase large chain OS=Listeria monocytogenes serotype 4b (strain F2365) GN=carB PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.181e-23
Identity = 42/99 (42.42%), Postives = 61/99 (61.62%), Query Frame = 2

Query:    5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIP--KHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295
            LN+ G++N QY +    + +++E NPR+SRT PF+SK    P+A  A  V+ G++L DLG+T  + P  + + VK  V  F K +  D  LGPEM STG
Sbjct:  811 LNIIGMLNIQYVVDGE-EVFVIEVNPRSSRTAPFLSKITEIPMANVATRVILGENLIDLGYTPGLAPEKQEIFVKVPVFSFAKLRSVDTSLGPEMKSTG 908

HSP 2 Score: 51.9878 bits (123), Expect = 1.181e-23
Identity = 31/79 (39.24%), Postives = 45/79 (56.96%), Query Frame = 1

Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531
            EVMG D++   A  K  +A+G  +   GTV L++ D  K     +A+ F  IGFTI++T GTA  +E   I V +V K+
Sbjct:  909 EVMGKDVTLEKALYKGFVASGTTMHDYGTVLLTVADRDKEEAVELAKRFNRIGFTIMATKGTASTLEEANIPVSQVKKI 987

[Close]

BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_STRGG (Carbamoyl-phosphate synthase large chain OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=carB PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.535e-23
Identity = 53/114 (46.49%), Postives = 72/114 (63.16%), Query Frame = 2

Query:    5 LNVCGLMNCQYAITTSGDA-YLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPK-----------HVSVKEAVLPFEKF-----QGWDVLLGPEMISTG 295
            + V GL+N Q+A+  SGD  Y+LEANPRASRTVPF SKA   PLAK AA +  G ++ +L   + ++P+            +SVKEAV+P+ +F     +G D +LGPEM STG
Sbjct:  823 VGVLGLINIQFAL--SGDILYVLEANPRASRTVPFTSKATAVPLAKAAARISLGATIAELR-AEGLLPRTGDGGTLPLDAPISVKEAVMPWSRFRDIHGRGVDTVLGPEMRSTG 933

HSP 2 Score: 49.6766 bits (117), Expect = 1.535e-23
Identity = 30/78 (38.46%), Postives = 43/78 (55.13%), Query Frame = 1

Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLK 528
            EVMGID  F  A+AK+Q  A   LP +G  F+S+ +  K  +   A   +  GF +++TSGTA  ++  GI    V K
Sbjct:  934 EVMGIDSVFGTAYAKSQAGAYGPLPTAGRAFISVANRDKRSMIFPARELVAHGFELMATSGTAEVLKRNGINATVVRK 1011

[Close]

BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_BACHK (Carbamoyl-phosphate synthase large chain OS=Bacillus thuringiensis subsp. konkukian GN=carB PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.536e-23
Identity = 45/99 (45.45%), Postives = 58/99 (58.59%), Query Frame = 2

Query:    5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIP--KHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295
            LN+ GL+N Q+ +      Y++E NPRASRTVPF+SK  G P+A  A  V+ G+ L + G+     P  K V VK  V  F K +  D  LGPEM STG
Sbjct:  811 LNIVGLLNIQFVVFED-QVYVIEVNPRASRTVPFLSKITGVPMANVATKVILGQDLVEQGYGTGYHPEEKEVYVKAPVFSFAKLRSVDTTLGPEMKSTG 908

HSP 2 Score: 51.6026 bits (122), Expect = 1.536e-23
Identity = 27/79 (34.18%), Postives = 47/79 (59.49%), Query Frame = 1

Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531
            EVMG D++   A  K  +A+G  +P  G+V +++ D  K     IA+ F +IG+ +++T+GTA  +  + I V+ V K+
Sbjct:  909 EVMGKDLTLEKALYKGLVASGINIPTHGSVIITVADKDKEEAMEIAKRFHEIGYNLLATAGTAQSLTEQNIPVQVVNKI 987

[Close]

BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_BACCZ (Carbamoyl-phosphate synthase large chain OS=Bacillus cereus (strain ZK / E33L) GN=carB PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.536e-23
Identity = 45/99 (45.45%), Postives = 58/99 (58.59%), Query Frame = 2

Query:    5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIP--KHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295
            LN+ GL+N Q+ +      Y++E NPRASRTVPF+SK  G P+A  A  V+ G+ L + G+     P  K V VK  V  F K +  D  LGPEM STG
Sbjct:  811 LNIVGLLNIQFVVFKD-QVYVIEVNPRASRTVPFLSKITGVPMANVATKVILGQDLVEQGYGTGYHPEEKEVYVKAPVFSFAKLRSVDTTLGPEMKSTG 908

HSP 2 Score: 51.6026 bits (122), Expect = 1.536e-23
Identity = 27/79 (34.18%), Postives = 47/79 (59.49%), Query Frame = 1

Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531
            EVMG D++   A  K  +A+G  +P  G+V +++ D  K     IA+ F +IG+ +++T+GTA  +  + I V+ V K+
Sbjct:  909 EVMGKDLTLEKALYKGLVASGINIPTHGSVIITVADKDKEEAMEIAKRFHEIGYNLLATAGTAQSLAEQNIPVQVVNKI 987

[Close]

BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_BACC3 (Carbamoyl-phosphate synthase large chain OS=Bacillus cereus (strain 03BB102) GN=carB PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.536e-23
Identity = 45/99 (45.45%), Postives = 58/99 (58.59%), Query Frame = 2

Query:    5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIP--KHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295
            LN+ GL+N Q+ +      Y++E NPRASRTVPF+SK  G P+A  A  V+ G+ L + G+     P  K V VK  V  F K +  D  LGPEM STG
Sbjct:  811 LNIVGLLNIQFVVFKD-QVYVIEVNPRASRTVPFLSKITGVPMANVATKVILGQDLVEQGYGTGYHPEEKEVYVKAPVFSFAKLRSVDTTLGPEMKSTG 908

HSP 2 Score: 51.6026 bits (122), Expect = 1.536e-23
Identity = 27/79 (34.18%), Postives = 47/79 (59.49%), Query Frame = 1

Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531
            EVMG D++   A  K  +A+G  +P  G+V +++ D  K     IA+ F +IG+ +++T+GTA  +  + I V+ V K+
Sbjct:  909 EVMGKDLTLEKALYKGLVASGINIPTHGSVIITVADKDKEEAMEIAKRFHEIGYNLLATAGTAQSLAEQNIPVQVVNKI 987

[Close]

BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_BACC2 (Carbamoyl-phosphate synthase large chain OS=Bacillus cereus (strain G9842) GN=carB PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.536e-23
Identity = 45/99 (45.45%), Postives = 58/99 (58.59%), Query Frame = 2

Query:    5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIP--KHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295
            LN+ GL+N Q+ +      Y++E NPRASRTVPF+SK  G P+A  A  V+ G+ L + G+     P  K V VK  V  F K +  D  LGPEM STG
Sbjct:  811 LNIVGLLNIQFVVFKD-QVYVIEVNPRASRTVPFLSKITGVPMANVATKVILGQDLVEQGYGTGYHPEEKEVYVKAPVFSFAKLRSVDTTLGPEMKSTG 908

HSP 2 Score: 51.6026 bits (122), Expect = 1.536e-23
Identity = 27/79 (34.18%), Postives = 47/79 (59.49%), Query Frame = 1

Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531
            EVMG D++   A  K  +A+G  +P  G+V +++ D  K     IA+ F +IG+ +++T+GTA  +  + I V+ V K+
Sbjct:  909 EVMGKDLTLEKALYKGLVASGINIPTHGSVIITVADKDKEEAMEIAKRFHEIGYNLLATAGTAQSLAEQNIPVQVVNKI 987

The following BLAST results are available for this feature:

BLAST of CX287284 vs. ExPASy Swiss-Prot

BLAST of CX287284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231


Match Name	E-value	Identity	Description
CARB_BACCQ	1.181e-23	45.45	Carbamoyl-phosphate synthase large chain OS=Bacill...	[more]
CARB_BACC7	1.181e-23	45.45	Carbamoyl-phosphate synthase large chain OS=Bacill...	[more]
CARB_BACC1	1.181e-23	45.45	Carbamoyl-phosphate synthase large chain OS=Bacill...	[more]
CARB_LISMO	1.181e-23	42.42	Carbamoyl-phosphate synthase large chain OS=Lister...	[more]
CARB_LISMF	1.181e-23	42.42	Carbamoyl-phosphate synthase large chain OS=Lister...	[more]
CARB_STRGG	1.535e-23	46.49	Carbamoyl-phosphate synthase large chain OS=Strept...	[more]
CARB_BACHK	1.536e-23	45.45	Carbamoyl-phosphate synthase large chain OS=Bacill...	[more]
CARB_BACCZ	1.536e-23	45.45	Carbamoyl-phosphate synthase large chain OS=Bacill...	[more]
CARB_BACC3	1.536e-23	45.45	Carbamoyl-phosphate synthase large chain OS=Bacill...	[more]
CARB_BACC2	1.536e-23	45.45	Carbamoyl-phosphate synthase large chain OS=Bacill...	[more]

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Properties


Property Name	Value
Genbank description	C01006H01SK Veg1 Citrus clementina cDNA clone C01006H01, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX287284 ID=CX287284; Name=CX287284; organism=Citrus clementina; type=EST; length=533bp
TAGATTGAATGTGTGTGGACTCATGAATTGTCAGTATGCAATTACAACAT
CTGGGGATGCTTACTTGCTTGAGGCAAATCCCCGTGCTTCCCGTACCGTC
CCATTTGTGTCAAAAGCAATTGGGCACCCATTGGCCAAATATGCTGCTCT
TGTTATGTCGGGGAAGTCACTTAACGATTTAGGTTTCACAAAAGAGGTGA
TCCCCAAGCATGTGTCTGTTAAGGAAGCAGTTCTGCCCTTTGAGAAGTTC
CAAGGCTGGGATGTGCTGTTAGGGCCTGAGATGATAAGCACTGGGAGGTG
ATGGGTATAGACATGTCCTTCCCTATTGCATTTGCCAAGGCTCAAATTGC
TGCAGGGCAGAAGCTACCACTTTCAGGCACTGTGTTCCTCAGCTTAAATG
ACTTGACAAAGCCCCATCTTGAGAGAATTGCAGAGGCATTCTTAGATATA
GGATTCACGATTGTTTCAACTTCTGGGACAGCTCACTTTGTTGAATTAAA
AGGTATTGCTGTGGAAAGAGTGCTGAAGATGCA