CX287284
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_RUBXD (Carbamoyl-phosphate synthase large chain OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=carB PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 1.414e-28 Identity = 49/98 (50.00%), Postives = 62/98 (63.27%), Query Frame = 2 Query: 5 LNVCGLMNCQYAITTSGDAYL-LEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295 + V GLMN QY + GD + +E NPRASRTVP++SKA G PLA+ A V+ G+ L DLG + +VK V PF++F D LLGPEM STG Sbjct: 799 IGVVGLMNVQYVVR--GDEVMAIECNPRASRTVPYISKATGVPLARLATRVLLGEKLRDLG-PRPASSGSFAVKAPVFPFDRFAEVDPLLGPEMRSTG 893 HSP 2 Score: 62.7734 bits (151), Expect = 1.414e-28 Identity = 35/79 (44.30%), Postives = 48/79 (60.76%), Query Frame = 1 Query: 295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531 E MGID +F AFAKA AAGQ+LP SG V++S+ D K IA F D+GF ++++ GTA + G+ V K+ Sbjct: 894 EAMGIDPTFGGAFAKALAAAGQRLPESGRVYVSVADRDKRAAVLIARGFADLGFEVLASEGTAGVLRNNGLPAAVVPKI 972
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_ARTCA (Carbamoyl-phosphate synthase large chain OS=Arthrobacter chlorophenolicus (strain A6 / ATCC 700700 / DSM 12829 / JCM 12360) GN=carB PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 1.840e-28 Identity = 55/113 (48.67%), Postives = 72/113 (63.72%), Query Frame = 2 Query: 5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPK-----------HVSVKEAVLPFEKFQG-----WDVLLGPEMISTG 295 + V GL+N Q+A+ S Y+LEANPRASRTVPFVSKA G +AK AAL+ +G ++N L +++P+ V+VKEAVLPF +F+ D LLGPEM STG Sbjct: 818 VGVRGLINIQFALA-SDVLYVLEANPRASRTVPFVSKATGVQMAKAAALIGTGVTINQLRTAYKMLPETGDGSTLPLDAPVAVKEAVLPFSRFRTPEGKVVDSLLGPEMRSTG 929 HSP 2 Score: 60.8474 bits (146), Expect = 1.840e-28 Identity = 35/79 (44.30%), Postives = 44/79 (55.70%), Query Frame = 1 Query: 295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531 EVMGID F AFAK+Q A LP G VF+S+ + K + + D+GF IVST GTA + GIA V K+ Sbjct: 930 EVMGIDKHFDTAFAKSQAGANNALPTEGKVFVSVANRDKRSVIMGVKRLSDLGFEIVSTGGTADVLRRNGIAATPVRKV 1008
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_RENSM (Carbamoyl-phosphate synthase large chain OS=Renibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / IFO 15589) GN=carB PE=3 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 2.396e-28 Identity = 57/119 (47.90%), Postives = 71/119 (59.66%), Query Frame = 2 Query: 5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPK-----------------HVSVKEAVLPFEKFQG-----WDVLLGPEMISTG 295 + V GL+N Q+A+ S Y+LEANPRASRTVPFVSKA G LAK AAL+ +G ++N L ++IP V+VKEAVLPF +F+ D LLGPEM STG Sbjct: 818 VGVRGLINIQFALA-SDVLYVLEANPRASRTVPFVSKATGVQLAKAAALIGTGVTINQLRTAYKMIPSLPGTPGGFDGGSLPVGAPVAVKEAVLPFSRFRTPEGAVVDSLLGPEMRSTG 935 HSP 2 Score: 61.6178 bits (148), Expect = 2.396e-28 Identity = 35/79 (44.30%), Postives = 44/79 (55.70%), Query Frame = 1 Query: 295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531 EVMGID F AFAK+Q AA LP G VF+S+ + K + + D+GF IVST GTA + GI V K+ Sbjct: 936 EVMGIDKHFDTAFAKSQAAANNALPTEGKVFVSVANRDKRAVIMAVKLLADLGFEIVSTGGTADVLRRNGIQSSTVRKV 1014
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_BIFLI (Carbamoyl-phosphate synthase large chain OS=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / NCTC 11817 / S12) GN=carB PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 4.059e-28 Identity = 53/111 (47.75%), Postives = 71/111 (63.96%), Query Frame = 2 Query: 8 NVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPK----------HVSVKEAVLPFEKF-----QGWDVLLGPEMISTG 295 +V GL+N QYA + Y++EANPRASRTVPF SKA G LAK AA +M+G+++ D ++PK V+VKE+VLPF++F + D+LLGPEM STG Sbjct: 832 HVQGLINVQYAFMAN-TLYVIEANPRASRTVPFASKATGVALAKAAARIMAGETIADQRANGLLLPKGDGGDIHPGQQVAVKESVLPFKRFRTPVGKTVDILLGPEMRSTG 941 HSP 2 Score: 59.6918 bits (143), Expect = 4.059e-28 Identity = 35/72 (48.61%), Postives = 43/72 (59.72%), Query Frame = 1 Query: 295 EVMGIDMSFPIAFAKAQIAAGQK-LPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGI 507 EVMG D FP AFAK+Q+AA LP G VF+S+ND K L IA ++GF I +T GTA + GI Sbjct: 942 EVMGFDRDFPHAFAKSQLAAYDGGLPTHGNVFISVNDTDKRQLPLIAVRLEELGFKIWATEGTASVLSRYGI 1013
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_MYCLE (Carbamoyl-phosphate synthase large chain OS=Mycobacterium leprae GN=carB PE=3 SV=2) HSP 1 Score: 83.1889 bits (204), Expect = 4.059e-28 Identity = 54/112 (48.21%), Postives = 67/112 (59.82%), Query Frame = 2 Query: 5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEV--------IPKH--VSVKEAVLPFEKFQ-----GWDVLLGPEMISTG 295 + V GL+N QYA+ Y+LEANPRASRTVPFVSKA PLAK A +M G S++ L F + + H ++VKEAVLPF + + D LLGPEM STG Sbjct: 834 IGVVGLLNVQYALKEDV-LYVLEANPRASRTVPFVSKATAIPLAKACARIMLGSSISQLRFEGMLAASGDGGNVASHAPIAVKEAVLPFNRLRRADGAAIDSLLGPEMKSTG 944 HSP 2 Score: 62.3882 bits (150), Expect = 4.059e-28 Identity = 35/78 (44.87%), Postives = 46/78 (58.97%), Query Frame = 1 Query: 295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLK 528 EVMGID F AFAK+Q AA LP GTVF+S+ + K L + D+GF +++T GTA + KGI + V K Sbjct: 945 EVMGIDHDFGRAFAKSQTAAYGSLPTQGTVFVSVANRDKRLLVFPVKRLADLGFHVIATEGTAEMLRRKGIPCDEVRK 1022
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_ARTAT (Carbamoyl-phosphate synthase large chain OS=Arthrobacter aurescens (strain TC1) GN=carB PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 4.060e-28 Identity = 55/113 (48.67%), Postives = 72/113 (63.72%), Query Frame = 2 Query: 5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPK-----------HVSVKEAVLPFEKFQG-----WDVLLGPEMISTG 295 + V GL+N Q+A+ S Y+LEANPRASRTVPFVSKA G +AK AAL+ +G ++N L +++P+ V+VKEAVLPF +F+ D LLGPEM STG Sbjct: 818 VGVRGLINIQFALA-SDVLYVLEANPRASRTVPFVSKATGVQMAKAAALIGTGVTINQLRGAYKMLPETGDGSTLPLDAPVAVKEAVLPFSRFRTPEGKVVDSLLGPEMRSTG 929 HSP 2 Score: 60.077 bits (144), Expect = 4.060e-28 Identity = 34/79 (43.04%), Postives = 44/79 (55.70%), Query Frame = 1 Query: 295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531 EVMGID F AFAK+Q AA LP G +F+S+ + K + + D+GF IVST GTA + GI V K+ Sbjct: 930 EVMGIDKHFDTAFAKSQAAANNALPTEGKIFVSVANRDKRSVIMGVKRLSDLGFEIVSTGGTADVLRRNGIQATPVRKV 1008
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_BIFLO (Carbamoyl-phosphate synthase large chain OS=Bifidobacterium longum GN=carB PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 6.878e-28 Identity = 53/111 (47.75%), Postives = 71/111 (63.96%), Query Frame = 2 Query: 8 NVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPK----------HVSVKEAVLPFEKF-----QGWDVLLGPEMISTG 295 +V GL+N QYA + Y++EANPRASRTVPF SKA G LAK AA +M+G+++ D ++PK V+VKE+VLPF++F + D+LLGPEM STG Sbjct: 832 HVQGLINVQYAFMAN-TLYVIEANPRASRTVPFASKATGVALAKAAARIMAGETIADQRANGLLLPKGDGGDIHPGQQVAVKESVLPFKRFRTPVGKTVDILLGPEMRSTG 941 HSP 2 Score: 58.9214 bits (141), Expect = 6.878e-28 Identity = 34/72 (47.22%), Postives = 43/72 (59.72%), Query Frame = 1 Query: 295 EVMGIDMSFPIAFAKAQIAAGQK-LPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGI 507 EVMG D FP AFAK+Q+AA LP G VF+S+ND K L IA ++GF + +T GTA + GI Sbjct: 942 EVMGFDRDFPHAFAKSQLAAYDGGLPTHGNVFISVNDTDKRQLPLIAVRLEELGFKLWATEGTASVLRRYGI 1013
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_BIFLD (Carbamoyl-phosphate synthase large chain OS=Bifidobacterium longum (strain DJO10A) GN=carB PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 6.878e-28 Identity = 53/111 (47.75%), Postives = 71/111 (63.96%), Query Frame = 2 Query: 8 NVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPK----------HVSVKEAVLPFEKF-----QGWDVLLGPEMISTG 295 +V GL+N QYA + Y++EANPRASRTVPF SKA G LAK AA +M+G+++ D ++PK V+VKE+VLPF++F + D+LLGPEM STG Sbjct: 832 HVQGLINVQYAFMAN-TLYVIEANPRASRTVPFASKATGVALAKAAARIMAGETIADQRANGLLLPKGDGGDIHPGQQVAVKESVLPFKRFRTPVGKTVDILLGPEMRSTG 941 HSP 2 Score: 58.9214 bits (141), Expect = 6.878e-28 Identity = 34/72 (47.22%), Postives = 43/72 (59.72%), Query Frame = 1 Query: 295 EVMGIDMSFPIAFAKAQIAAGQK-LPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGI 507 EVMG D FP AFAK+Q+AA LP G VF+S+ND K L IA ++GF + +T GTA + GI Sbjct: 942 EVMGFDRDFPHAFAKSQLAAYDGGLPTHGNVFISVNDTDKRQLPLIAVRLEELGFKLWATEGTASVLRRYGI 1013
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_BIFAA (Carbamoyl-phosphate synthase large chain OS=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083) GN=carB PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 8.954e-28 Identity = 52/110 (47.27%), Postives = 68/110 (61.82%), Query Frame = 2 Query: 11 VCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIP----------KHVSVKEAVLPFEKF-----QGWDVLLGPEMISTG 295 V GL+N QYA + Y++EANPRASRTVPF SKA G LAK AA +M G+++ ++P + V+VKE+VLPF++F + DVLLGPEM STG Sbjct: 833 VQGLINVQYAFMAN-TLYVIEANPRASRTVPFASKATGVALAKAAARIMVGETIQQQRDNGLLLPHGDGGDIHRGQQVAVKESVLPFKRFRTPLGKTVDVLLGPEMRSTG 941 HSP 2 Score: 63.1586 bits (152), Expect = 8.954e-28 Identity = 35/72 (48.61%), Postives = 45/72 (62.50%), Query Frame = 1 Query: 295 EVMGIDMSFPIAFAKAQIAAGQK-LPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGI 507 EVMG D FP AFAK+Q+AA + LP SG VF+S+ND K L A +++GF I +T GTA + GI Sbjct: 942 EVMGFDRDFPHAFAKSQLAAYEGGLPTSGNVFISVNDTDKRQLPLFAARLVELGFNIWATEGTASVLRRYGI 1013
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_BIFA0 (Carbamoyl-phosphate synthase large chain OS=Bifidobacterium animalis subsp. lactis (strain AD011) GN=carB PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.165e-27 Identity = 52/110 (47.27%), Postives = 69/110 (62.73%), Query Frame = 2 Query: 11 VCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIP----------KHVSVKEAVLPFEKF-----QGWDVLLGPEMISTG 295 V GLMN QYA + Y++EANPRASRTVPF SKA G LAK AA +M+G+++ ++P + V+VKE+VLPF++F + D+LLGPEM STG Sbjct: 833 VRGLMNVQYAFMAN-TLYVIEANPRASRTVPFASKATGVALAKAAARIMAGETIEQQRENGLLLPYGDGGDVRLGQQVAVKESVLPFKRFRTPVGKTVDILLGPEMRSTG 941 HSP 2 Score: 60.4622 bits (145), Expect = 1.165e-27 Identity = 35/80 (43.75%), Postives = 49/80 (61.25%), Query Frame = 1 Query: 295 EVMGIDMSFPIAFAKAQIAAGQK-LPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531 EVMG D FP AFAK+Q+A+ + LP +G VF+S+ND K L A +++GF I +T GTA + GI + V K+ Sbjct: 942 EVMGFDRDFPHAFAKSQLASYEGGLPTNGNVFISVNDTDKRQLPLFAVRLVELGFEIWATEGTASVLRRYGIESKIVDKI 1021 The following BLAST results are available for this feature:
BLAST of CX287284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 231
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Sequences
The
following sequences are available for this feature:
EST sequence >CX287284 ID=CX287284; Name=CX287284; organism=Citrus clementina; type=EST; length=533bpback to top |