CX287284

Overview
NameCX287284
Unique NameCX287284
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length533
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14851 contig Ccv1_Contig14851:72..605. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_RUBXD (Carbamoyl-phosphate synthase large chain OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=carB PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.414e-28
Identity = 49/98 (50.00%), Postives = 62/98 (63.27%), Query Frame = 2
Query:    5 LNVCGLMNCQYAITTSGDAYL-LEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295
            + V GLMN QY +   GD  + +E NPRASRTVP++SKA G PLA+ A  V+ G+ L DLG  +       +VK  V PF++F   D LLGPEM STG
Sbjct:  799 IGVVGLMNVQYVVR--GDEVMAIECNPRASRTVPYISKATGVPLARLATRVLLGEKLRDLG-PRPASSGSFAVKAPVFPFDRFAEVDPLLGPEMRSTG 893          

HSP 2 Score: 62.7734 bits (151), Expect = 1.414e-28
Identity = 35/79 (44.30%), Postives = 48/79 (60.76%), Query Frame = 1
Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531
            E MGID +F  AFAKA  AAGQ+LP SG V++S+ D  K     IA  F D+GF ++++ GTA  +   G+    V K+
Sbjct:  894 EAMGIDPTFGGAFAKALAAAGQRLPESGRVYVSVADRDKRAAVLIARGFADLGFEVLASEGTAGVLRNNGLPAAVVPKI 972          
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_ARTCA (Carbamoyl-phosphate synthase large chain OS=Arthrobacter chlorophenolicus (strain A6 / ATCC 700700 / DSM 12829 / JCM 12360) GN=carB PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.840e-28
Identity = 55/113 (48.67%), Postives = 72/113 (63.72%), Query Frame = 2
Query:    5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPK-----------HVSVKEAVLPFEKFQG-----WDVLLGPEMISTG 295
            + V GL+N Q+A+  S   Y+LEANPRASRTVPFVSKA G  +AK AAL+ +G ++N L    +++P+            V+VKEAVLPF +F+       D LLGPEM STG
Sbjct:  818 VGVRGLINIQFALA-SDVLYVLEANPRASRTVPFVSKATGVQMAKAAALIGTGVTINQLRTAYKMLPETGDGSTLPLDAPVAVKEAVLPFSRFRTPEGKVVDSLLGPEMRSTG 929          

HSP 2 Score: 60.8474 bits (146), Expect = 1.840e-28
Identity = 35/79 (44.30%), Postives = 44/79 (55.70%), Query Frame = 1
Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531
            EVMGID  F  AFAK+Q  A   LP  G VF+S+ +  K  +    +   D+GF IVST GTA  +   GIA   V K+
Sbjct:  930 EVMGIDKHFDTAFAKSQAGANNALPTEGKVFVSVANRDKRSVIMGVKRLSDLGFEIVSTGGTADVLRRNGIAATPVRKV 1008          
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_RENSM (Carbamoyl-phosphate synthase large chain OS=Renibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / IFO 15589) GN=carB PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.396e-28
Identity = 57/119 (47.90%), Postives = 71/119 (59.66%), Query Frame = 2
Query:    5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPK-----------------HVSVKEAVLPFEKFQG-----WDVLLGPEMISTG 295
            + V GL+N Q+A+  S   Y+LEANPRASRTVPFVSKA G  LAK AAL+ +G ++N L    ++IP                   V+VKEAVLPF +F+       D LLGPEM STG
Sbjct:  818 VGVRGLINIQFALA-SDVLYVLEANPRASRTVPFVSKATGVQLAKAAALIGTGVTINQLRTAYKMIPSLPGTPGGFDGGSLPVGAPVAVKEAVLPFSRFRTPEGAVVDSLLGPEMRSTG 935          

HSP 2 Score: 61.6178 bits (148), Expect = 2.396e-28
Identity = 35/79 (44.30%), Postives = 44/79 (55.70%), Query Frame = 1
Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531
            EVMGID  F  AFAK+Q AA   LP  G VF+S+ +  K  +    +   D+GF IVST GTA  +   GI    V K+
Sbjct:  936 EVMGIDKHFDTAFAKSQAAANNALPTEGKVFVSVANRDKRAVIMAVKLLADLGFEIVSTGGTADVLRRNGIQSSTVRKV 1014          
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_BIFLI (Carbamoyl-phosphate synthase large chain OS=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / NCTC 11817 / S12) GN=carB PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 4.059e-28
Identity = 53/111 (47.75%), Postives = 71/111 (63.96%), Query Frame = 2
Query:    8 NVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPK----------HVSVKEAVLPFEKF-----QGWDVLLGPEMISTG 295
            +V GL+N QYA   +   Y++EANPRASRTVPF SKA G  LAK AA +M+G+++ D      ++PK           V+VKE+VLPF++F     +  D+LLGPEM STG
Sbjct:  832 HVQGLINVQYAFMAN-TLYVIEANPRASRTVPFASKATGVALAKAAARIMAGETIADQRANGLLLPKGDGGDIHPGQQVAVKESVLPFKRFRTPVGKTVDILLGPEMRSTG 941          

HSP 2 Score: 59.6918 bits (143), Expect = 4.059e-28
Identity = 35/72 (48.61%), Postives = 43/72 (59.72%), Query Frame = 1
Query:  295 EVMGIDMSFPIAFAKAQIAAGQK-LPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGI 507
            EVMG D  FP AFAK+Q+AA    LP  G VF+S+ND  K  L  IA    ++GF I +T GTA  +   GI
Sbjct:  942 EVMGFDRDFPHAFAKSQLAAYDGGLPTHGNVFISVNDTDKRQLPLIAVRLEELGFKIWATEGTASVLSRYGI 1013          
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_MYCLE (Carbamoyl-phosphate synthase large chain OS=Mycobacterium leprae GN=carB PE=3 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 4.059e-28
Identity = 54/112 (48.21%), Postives = 67/112 (59.82%), Query Frame = 2
Query:    5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEV--------IPKH--VSVKEAVLPFEKFQ-----GWDVLLGPEMISTG 295
            + V GL+N QYA+      Y+LEANPRASRTVPFVSKA   PLAK  A +M G S++ L F   +        +  H  ++VKEAVLPF + +       D LLGPEM STG
Sbjct:  834 IGVVGLLNVQYALKEDV-LYVLEANPRASRTVPFVSKATAIPLAKACARIMLGSSISQLRFEGMLAASGDGGNVASHAPIAVKEAVLPFNRLRRADGAAIDSLLGPEMKSTG 944          

HSP 2 Score: 62.3882 bits (150), Expect = 4.059e-28
Identity = 35/78 (44.87%), Postives = 46/78 (58.97%), Query Frame = 1
Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLK 528
            EVMGID  F  AFAK+Q AA   LP  GTVF+S+ +  K  L    +   D+GF +++T GTA  +  KGI  + V K
Sbjct:  945 EVMGIDHDFGRAFAKSQTAAYGSLPTQGTVFVSVANRDKRLLVFPVKRLADLGFHVIATEGTAEMLRRKGIPCDEVRK 1022          
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_ARTAT (Carbamoyl-phosphate synthase large chain OS=Arthrobacter aurescens (strain TC1) GN=carB PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.060e-28
Identity = 55/113 (48.67%), Postives = 72/113 (63.72%), Query Frame = 2
Query:    5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPK-----------HVSVKEAVLPFEKFQG-----WDVLLGPEMISTG 295
            + V GL+N Q+A+  S   Y+LEANPRASRTVPFVSKA G  +AK AAL+ +G ++N L    +++P+            V+VKEAVLPF +F+       D LLGPEM STG
Sbjct:  818 VGVRGLINIQFALA-SDVLYVLEANPRASRTVPFVSKATGVQMAKAAALIGTGVTINQLRGAYKMLPETGDGSTLPLDAPVAVKEAVLPFSRFRTPEGKVVDSLLGPEMRSTG 929          

HSP 2 Score: 60.077 bits (144), Expect = 4.060e-28
Identity = 34/79 (43.04%), Postives = 44/79 (55.70%), Query Frame = 1
Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531
            EVMGID  F  AFAK+Q AA   LP  G +F+S+ +  K  +    +   D+GF IVST GTA  +   GI    V K+
Sbjct:  930 EVMGIDKHFDTAFAKSQAAANNALPTEGKIFVSVANRDKRSVIMGVKRLSDLGFEIVSTGGTADVLRRNGIQATPVRKV 1008          
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_BIFLO (Carbamoyl-phosphate synthase large chain OS=Bifidobacterium longum GN=carB PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.878e-28
Identity = 53/111 (47.75%), Postives = 71/111 (63.96%), Query Frame = 2
Query:    8 NVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPK----------HVSVKEAVLPFEKF-----QGWDVLLGPEMISTG 295
            +V GL+N QYA   +   Y++EANPRASRTVPF SKA G  LAK AA +M+G+++ D      ++PK           V+VKE+VLPF++F     +  D+LLGPEM STG
Sbjct:  832 HVQGLINVQYAFMAN-TLYVIEANPRASRTVPFASKATGVALAKAAARIMAGETIADQRANGLLLPKGDGGDIHPGQQVAVKESVLPFKRFRTPVGKTVDILLGPEMRSTG 941          

HSP 2 Score: 58.9214 bits (141), Expect = 6.878e-28
Identity = 34/72 (47.22%), Postives = 43/72 (59.72%), Query Frame = 1
Query:  295 EVMGIDMSFPIAFAKAQIAAGQK-LPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGI 507
            EVMG D  FP AFAK+Q+AA    LP  G VF+S+ND  K  L  IA    ++GF + +T GTA  +   GI
Sbjct:  942 EVMGFDRDFPHAFAKSQLAAYDGGLPTHGNVFISVNDTDKRQLPLIAVRLEELGFKLWATEGTASVLRRYGI 1013          
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_BIFLD (Carbamoyl-phosphate synthase large chain OS=Bifidobacterium longum (strain DJO10A) GN=carB PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.878e-28
Identity = 53/111 (47.75%), Postives = 71/111 (63.96%), Query Frame = 2
Query:    8 NVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPK----------HVSVKEAVLPFEKF-----QGWDVLLGPEMISTG 295
            +V GL+N QYA   +   Y++EANPRASRTVPF SKA G  LAK AA +M+G+++ D      ++PK           V+VKE+VLPF++F     +  D+LLGPEM STG
Sbjct:  832 HVQGLINVQYAFMAN-TLYVIEANPRASRTVPFASKATGVALAKAAARIMAGETIADQRANGLLLPKGDGGDIHPGQQVAVKESVLPFKRFRTPVGKTVDILLGPEMRSTG 941          

HSP 2 Score: 58.9214 bits (141), Expect = 6.878e-28
Identity = 34/72 (47.22%), Postives = 43/72 (59.72%), Query Frame = 1
Query:  295 EVMGIDMSFPIAFAKAQIAAGQK-LPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGI 507
            EVMG D  FP AFAK+Q+AA    LP  G VF+S+ND  K  L  IA    ++GF + +T GTA  +   GI
Sbjct:  942 EVMGFDRDFPHAFAKSQLAAYDGGLPTHGNVFISVNDTDKRQLPLIAVRLEELGFKLWATEGTASVLRRYGI 1013          
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_BIFAA (Carbamoyl-phosphate synthase large chain OS=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083) GN=carB PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.954e-28
Identity = 52/110 (47.27%), Postives = 68/110 (61.82%), Query Frame = 2
Query:   11 VCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIP----------KHVSVKEAVLPFEKF-----QGWDVLLGPEMISTG 295
            V GL+N QYA   +   Y++EANPRASRTVPF SKA G  LAK AA +M G+++        ++P          + V+VKE+VLPF++F     +  DVLLGPEM STG
Sbjct:  833 VQGLINVQYAFMAN-TLYVIEANPRASRTVPFASKATGVALAKAAARIMVGETIQQQRDNGLLLPHGDGGDIHRGQQVAVKESVLPFKRFRTPLGKTVDVLLGPEMRSTG 941          

HSP 2 Score: 63.1586 bits (152), Expect = 8.954e-28
Identity = 35/72 (48.61%), Postives = 45/72 (62.50%), Query Frame = 1
Query:  295 EVMGIDMSFPIAFAKAQIAAGQK-LPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGI 507
            EVMG D  FP AFAK+Q+AA +  LP SG VF+S+ND  K  L   A   +++GF I +T GTA  +   GI
Sbjct:  942 EVMGFDRDFPHAFAKSQLAAYEGGLPTSGNVFISVNDTDKRQLPLFAARLVELGFNIWATEGTASVLRRYGI 1013          
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_BIFA0 (Carbamoyl-phosphate synthase large chain OS=Bifidobacterium animalis subsp. lactis (strain AD011) GN=carB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.165e-27
Identity = 52/110 (47.27%), Postives = 69/110 (62.73%), Query Frame = 2
Query:   11 VCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIP----------KHVSVKEAVLPFEKF-----QGWDVLLGPEMISTG 295
            V GLMN QYA   +   Y++EANPRASRTVPF SKA G  LAK AA +M+G+++        ++P          + V+VKE+VLPF++F     +  D+LLGPEM STG
Sbjct:  833 VRGLMNVQYAFMAN-TLYVIEANPRASRTVPFASKATGVALAKAAARIMAGETIEQQRENGLLLPYGDGGDVRLGQQVAVKESVLPFKRFRTPVGKTVDILLGPEMRSTG 941          

HSP 2 Score: 60.4622 bits (145), Expect = 1.165e-27
Identity = 35/80 (43.75%), Postives = 49/80 (61.25%), Query Frame = 1
Query:  295 EVMGIDMSFPIAFAKAQIAAGQK-LPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531
            EVMG D  FP AFAK+Q+A+ +  LP +G VF+S+ND  K  L   A   +++GF I +T GTA  +   GI  + V K+
Sbjct:  942 EVMGFDRDFPHAFAKSQLASYEGGLPTNGNVFISVNDTDKRQLPLFAVRLVELGFEIWATEGTASVLRRYGIESKIVDKI 1021          
The following BLAST results are available for this feature:
BLAST of CX287284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
CARB_RUBXD1.414e-2850.00Carbamoyl-phosphate synthase large chain OS=Rubrob... [more]
CARB_ARTCA1.840e-2848.67Carbamoyl-phosphate synthase large chain OS=Arthro... [more]
CARB_RENSM2.396e-2847.90Carbamoyl-phosphate synthase large chain OS=Reniba... [more]
CARB_BIFLI4.059e-2847.75Carbamoyl-phosphate synthase large chain OS=Bifido... [more]
CARB_MYCLE4.059e-2848.21Carbamoyl-phosphate synthase large chain OS=Mycoba... [more]
CARB_ARTAT4.060e-2848.67Carbamoyl-phosphate synthase large chain OS=Arthro... [more]
CARB_BIFLO6.878e-2847.75Carbamoyl-phosphate synthase large chain OS=Bifido... [more]
CARB_BIFLD6.878e-2847.75Carbamoyl-phosphate synthase large chain OS=Bifido... [more]
CARB_BIFAA8.954e-2847.27Carbamoyl-phosphate synthase large chain OS=Bifido... [more]
CARB_BIFA01.165e-2747.27Carbamoyl-phosphate synthase large chain OS=Bifido... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01006H01SK Veg1 Citrus clementina cDNA clone C01006H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287284 ID=CX287284; Name=CX287284; organism=Citrus clementina; type=EST; length=533bp
TAGATTGAATGTGTGTGGACTCATGAATTGTCAGTATGCAATTACAACAT
CTGGGGATGCTTACTTGCTTGAGGCAAATCCCCGTGCTTCCCGTACCGTC
CCATTTGTGTCAAAAGCAATTGGGCACCCATTGGCCAAATATGCTGCTCT
TGTTATGTCGGGGAAGTCACTTAACGATTTAGGTTTCACAAAAGAGGTGA
TCCCCAAGCATGTGTCTGTTAAGGAAGCAGTTCTGCCCTTTGAGAAGTTC
CAAGGCTGGGATGTGCTGTTAGGGCCTGAGATGATAAGCACTGGGAGGTG
ATGGGTATAGACATGTCCTTCCCTATTGCATTTGCCAAGGCTCAAATTGC
TGCAGGGCAGAAGCTACCACTTTCAGGCACTGTGTTCCTCAGCTTAAATG
ACTTGACAAAGCCCCATCTTGAGAGAATTGCAGAGGCATTCTTAGATATA
GGATTCACGATTGTTTCAACTTCTGGGACAGCTCACTTTGTTGAATTAAA
AGGTATTGCTGTGGAAAGAGTGCTGAAGATGCA
back to top