CX287287

Overview
NameCX287287
Unique NameCX287287
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length557
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HSP83_DROPS (Heat shock protein 83 OS=Drosophila pseudoobscura pseudoobscura GN=Hsp83 PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.359e-14
Identity = 36/66 (54.55%), Postives = 54/66 (81.82%), Query Frame = 1
Query:  304 EKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPD 501
            E F +QAE+++LM LI+++ YS+KE+FLREL+SNASDALDK+R+ S+T+PS L    +L I++ P+
Sbjct:    6 ETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELYIKLIPN 71          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HSP83_DROPE (Heat shock protein 83 (Fragment) OS=Drosophila persimilis GN=Hsp83 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.359e-14
Identity = 36/66 (54.55%), Postives = 54/66 (81.82%), Query Frame = 1
Query:  304 EKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPD 501
            E F +QAE+++LM LI+++ YS+KE+FLREL+SNASDALDK+R+ S+T+PS L    +L I++ P+
Sbjct:    6 ETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELYIKLIPN 71          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HSP83_DROMI (Heat shock protein 83 (Fragment) OS=Drosophila miranda GN=Hsp83 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.359e-14
Identity = 36/66 (54.55%), Postives = 54/66 (81.82%), Query Frame = 1
Query:  304 EKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPD 501
            E F +QAE+++LM LI+++ YS+KE+FLREL+SNASDALDK+R+ S+T+PS L    +L I++ P+
Sbjct:    6 ETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELYIKLIPN 71          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HSP83_DROME (Heat shock protein 83 OS=Drosophila melanogaster GN=Hsp83 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.359e-14
Identity = 36/66 (54.55%), Postives = 54/66 (81.82%), Query Frame = 1
Query:  304 EKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPD 501
            E F +QAE+++LM LI+++ YS+KE+FLREL+SNASDALDK+R+ S+T+PS L    +L I++ P+
Sbjct:    6 ETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELYIKLIPN 71          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HSP83_DROAV (Heat shock protein 83 OS=Drosophila auraria GN=Hsp83 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.359e-14
Identity = 36/66 (54.55%), Postives = 54/66 (81.82%), Query Frame = 1
Query:  304 EKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPD 501
            E F +QAE+++LM LI+++ YS+KE+FLREL+SNASDALDK+R+ S+T+PS L    +L I++ P+
Sbjct:    6 ETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELYIKLIPN 71          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HSP81_ARATH (Heat shock protein 81-1 OS=Arabidopsis thaliana GN=HSP81-1 PE=1 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 1.359e-14
Identity = 37/69 (53.62%), Postives = 54/69 (78.26%), Query Frame = 1
Query:  304 EKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPEN 510
            E F +QAE+++L+ LI+++ YS+KE+FLREL+SN+SDALDK+RF S+T+ S L    +L IR+ PD  N
Sbjct:    5 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRLVPDKSN 73          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HS90A_MOUSE (Heat shock protein HSP 90-alpha OS=Mus musculus GN=Hsp90aa1 PE=1 SV=4)

HSP 1 Score: 79.337 bits (194), Expect = 1.359e-14
Identity = 36/78 (46.15%), Postives = 57/78 (73.08%), Query Frame = 1
Query:  277 DKEAPDTSGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPEN 510
            D+   +   E F +QAE+++LM LI+++ YS+KE+FLREL+SN+SDALDK+R+ S+T+PS L    +L I + P  ++
Sbjct:    9 DQPMEEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPSKQD 86          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HTPG_RHOFD (Chaperone protein htpG OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=htpG PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.775e-14
Identity = 36/67 (53.73%), Postives = 51/67 (76.12%), Query Frame = 1
Query:  304 EKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDP 504
            +   +QAEV++L+ L+ HSLYS+KE+FLREL+SNASDA DKLR+ ++ +  L  DA  LE+R+  DP
Sbjct:    4 QTLSFQAEVAQLLHLVTHSLYSNKEIFLRELISNASDACDKLRYEAINDSGLYEDAPTLEVRVSFDP 70          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HTPG_PSEHT (Chaperone protein htpG OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=htpG PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.775e-14
Identity = 38/68 (55.88%), Postives = 51/68 (75.00%), Query Frame = 1
Query:  304 EKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE 507
            E   +Q EV +L++L++HSLYS+KE+FLRELVSNASDA DKLRFL++++  L     DL +RI  D E
Sbjct:    7 ETLGFQTEVKQLLNLMIHSLYSNKEIFLRELVSNASDAADKLRFLALSQGDLYQGDADLRVRISADKE 74          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HTPG_METPP (Chaperone protein htpG OS=Methylibium petroleiphilum (strain PM1) GN=htpG PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.775e-14
Identity = 37/68 (54.41%), Postives = 51/68 (75.00%), Query Frame = 1
Query:  304 EKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE 507
            +   +QAEV +L+ L+ HSLYS+KE+FLREL+SNASDA DKLRF ++ + +L  DA  LE+R+  D E
Sbjct:    4 QTLSFQAEVQQLLHLVTHSLYSNKEIFLRELISNASDACDKLRFEALNDAALYEDASTLEVRVSFDKE 71          
The following BLAST results are available for this feature:
BLAST of CX287287 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 366
Match NameE-valueIdentityDescription
HSP83_DROPS1.359e-1454.55Heat shock protein 83 OS=Drosophila pseudoobscura ... [more]
HSP83_DROPE1.359e-1454.55Heat shock protein 83 (Fragment) OS=Drosophila per... [more]
HSP83_DROMI1.359e-1454.55Heat shock protein 83 (Fragment) OS=Drosophila mir... [more]
HSP83_DROME1.359e-1454.55Heat shock protein 83 OS=Drosophila melanogaster G... [more]
HSP83_DROAV1.359e-1454.55Heat shock protein 83 OS=Drosophila auraria GN=Hsp... [more]
HSP81_ARATH1.359e-1453.62Heat shock protein 81-1 OS=Arabidopsis thaliana GN... [more]
HS90A_MOUSE1.359e-1446.15Heat shock protein HSP 90-alpha OS=Mus musculus GN... [more]
HTPG_RHOFD1.775e-1453.73Chaperone protein htpG OS=Rhodoferax ferrireducens... [more]
HTPG_PSEHT1.775e-1455.88Chaperone protein htpG OS=Pseudoalteromonas halopl... [more]
HTPG_METPP1.775e-1454.41Chaperone protein htpG OS=Methylibium petroleiphil... [more]

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Properties
Property NameValue
Genbank descriptionC01006H04SK Veg1 Citrus clementina cDNA clone C01006H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287287 ID=CX287287; Name=CX287287; organism=Citrus clementina; type=EST; length=557bp
GTTCAAACCATCTTATTAAGCCAGCCCATTATCTTCTTCTCTCTCTGTAT
TCGAAGCCTTTTAATGGCTCCAGTTCTGAGCAGAACATTAGCCACTACCT
CTTTAGTGTCACTTCCAACTTCAACTCCTTTTTCTTTTAAACACTCCAAC
AACAAGGCCTTCAATTTCAGAAGCGCTTTTTTGCCGAGAAGTGGCGGCTT
AACTTGTGCTGGATTGAAGTGGAACCTTCAGAAGAGGAATAAAAGAGTCG
GGATACGGTGTGATGCTGCTGTTGCTGACAAAGAGGCCCCTGATACTTCT
GGTGAGAAGTTCGAGTACCAAGCCGAGGTCAGTCGCCTGATGGACTTGAT
TGTTCATAGTCTGTACAGCCACAAGGAGGTGTTCCTGCGAGAGCTTGTGA
GCAATGCAAGTGATGCTTTGGATAAGTTGAGATTTTTAAGTGTTACCGAG
CCCTCTCTTCTTGGAGATGCTGGCGATCTTGAGATTCGCATCAAGCCTGA
TCCAGAAAATGGGACCATCACCATAACGGATACTGGTATTGGAATGACTA
AAGAAGA
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