CX287287

Overview
NameCX287287
Unique NameCX287287
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length557
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HTPG_KLEP7 (Chaperone protein htpG OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=htpG PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.775e-14
Identity = 35/65 (53.85%), Postives = 52/65 (80.00%), Query Frame = 1
Query:  316 YQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPEN 510
            +Q+EV +L+ L++HSLYS+KE+FLREL+SNASDA DKLRF ++++P L    G+L +R+  D +N
Sbjct:    9 FQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSQPDLYEGDGELRVRVSFDKDN 73          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HS90A_HORSE (Heat shock protein HSP 90-alpha (Fragment) OS=Equus caballus GN=HSP90AA1 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.775e-14
Identity = 35/69 (50.72%), Postives = 55/69 (79.71%), Query Frame = 1
Query:  304 EKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPEN 510
            E F +QAE+++LM LI+++ YS+KE+FLREL+SN+SDALDK+R+ S+T+PS L    +L I + P+ ++
Sbjct:    7 ETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQD 75          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HTPG_SHEDO (Chaperone protein htpG OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=htpG PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.319e-14
Identity = 36/68 (52.94%), Postives = 52/68 (76.47%), Query Frame = 1
Query:  304 EKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE 507
            E   +Q EV +L+ L++HSLYS+KE+FLRELVSNA+DA DKLR+L++T+ +L    G+L +R+  D E
Sbjct:    5 ETHGFQTEVKQLLQLMIHSLYSNKEIFLRELVSNAADAADKLRYLALTDDALYEGDGELRVRVSTDKE 72          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HTPG_RHILO (Chaperone protein htpG OS=Rhizobium loti GN=htpG PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.319e-14
Identity = 37/65 (56.92%), Postives = 51/65 (78.46%), Query Frame = 1
Query:  316 YQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPEN 510
            ++A+VSRL+ ++VHS+YS K+VFLREL+SNA+DA +KLRF +V+ P LLGD     I I  DP+N
Sbjct:   13 FEADVSRLLHMMVHSVYSDKDVFLRELISNAADACEKLRFEAVSRPELLGDDPKPRISISADPDN 77          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HTPG_PSEMY (Chaperone protein htpG OS=Pseudomonas mendocina (strain ymp) GN=htpG PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.319e-14
Identity = 37/72 (51.39%), Postives = 53/72 (73.61%), Query Frame = 1
Query:  292 DTSGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE 507
            +T  E   +Q EV +L+ L++HSLYS+KE+FLREL+SNASDA DKLRF ++ +P LL    +L+IR+  D +
Sbjct:    4 ETQKETLGFQTEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFEALAKPELLEGGAELKIRLSFDKD 75          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HTPG_HAEPS (Chaperone protein htpG OS=Haemophilus parasuis serovar 5 (strain SH0165) GN=htpG PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.319e-14
Identity = 37/69 (53.62%), Postives = 53/69 (76.81%), Query Frame = 1
Query:  295 TSGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPD 501
            T+ E   +Q+EV +L+ L++HSLYS+KE+FLREL+SNASDA DKLRF ++++P L    G+L +RI  D
Sbjct:    3 TNQETRGFQSEVKQLLQLMIHSLYSNKEIFLRELISNASDAADKLRFKALSQPELYEGDGELRVRISID 71          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HTPG_ALCBS (Chaperone protein htpG OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=htpG PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.319e-14
Identity = 36/64 (56.25%), Postives = 52/64 (81.25%), Query Frame = 1
Query:  316 YQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE 507
            +QAEVSRL+ L++HSLYS++E+FLREL+SNASDA DKLRF ++  P+LL   G+ +I ++ D +
Sbjct:   10 FQAEVSRLLHLMIHSLYSNREIFLRELISNASDACDKLRFEALDNPALLEQGGEPQITLRVDKD 73          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HTPG_ACISJ (Chaperone protein htpG OS=Acidovorax sp. (strain JS42) GN=htpG PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.319e-14
Identity = 38/64 (59.38%), Postives = 51/64 (79.69%), Query Frame = 1
Query:  316 YQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE 507
            +QAEV++L+ L+ HSLYS+KE+FLRELVSNASDA DKLRF ++   +L  DA +LE+R+  D E
Sbjct:    8 FQAEVAQLLHLVTHSLYSNKEIFLRELVSNASDACDKLRFEALNNAALYEDAPNLEVRVSFDKE 71          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: H90B3_HUMAN (Putative heat shock protein HSP 90-beta-3 OS=Homo sapiens GN=HSP90AB3P PE=5 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.319e-14
Identity = 35/68 (51.47%), Postives = 56/68 (82.35%), Query Frame = 1
Query:  304 EKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE 507
            E F +QAE+++L+ LI+++ YS++E+FL+EL+SNASDALDK+R+ S+T+PS L    +L+I I P+P+
Sbjct:   13 ETFAFQAEIAQLISLIINTFYSNEEIFLQELISNASDALDKIRYESLTDPSKLDSGKELKIDIIPNPQ 80          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HTPG_SHEFN (Chaperone protein htpG OS=Shewanella frigidimarina (strain NCIMB 400) GN=htpG PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.028e-14
Identity = 36/68 (52.94%), Postives = 52/68 (76.47%), Query Frame = 1
Query:  304 EKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE 507
            E   +Q EV +L+ L++HSLYS+KE+FLRELVSNA+DA DKLR+L++T+ +L    GDL +R+  + E
Sbjct:    5 ETHGFQTEVKQLLQLMIHSLYSNKEIFLRELVSNAADAADKLRYLALTDDTLYEGNGDLRVRVSANKE 72          
The following BLAST results are available for this feature:
BLAST of CX287287 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 366
Match NameE-valueIdentityDescription
HTPG_KLEP71.775e-1453.85Chaperone protein htpG OS=Klebsiella pneumoniae su... [more]
HS90A_HORSE1.775e-1450.72Heat shock protein HSP 90-alpha (Fragment) OS=Equu... [more]
HTPG_SHEDO2.319e-1452.94Chaperone protein htpG OS=Shewanella denitrificans... [more]
HTPG_RHILO2.319e-1456.92Chaperone protein htpG OS=Rhizobium loti GN=htpG P... [more]
HTPG_PSEMY2.319e-1451.39Chaperone protein htpG OS=Pseudomonas mendocina (s... [more]
HTPG_HAEPS2.319e-1453.62Chaperone protein htpG OS=Haemophilus parasuis ser... [more]
HTPG_ALCBS2.319e-1456.25Chaperone protein htpG OS=Alcanivorax borkumensis ... [more]
HTPG_ACISJ2.319e-1459.38Chaperone protein htpG OS=Acidovorax sp. (strain J... [more]
H90B3_HUMAN2.319e-1451.47Putative heat shock protein HSP 90-beta-3 OS=Homo ... [more]
HTPG_SHEFN3.028e-1452.94Chaperone protein htpG OS=Shewanella frigidimarina... [more]

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Properties
Property NameValue
Genbank descriptionC01006H04SK Veg1 Citrus clementina cDNA clone C01006H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287287 ID=CX287287; Name=CX287287; organism=Citrus clementina; type=EST; length=557bp
GTTCAAACCATCTTATTAAGCCAGCCCATTATCTTCTTCTCTCTCTGTAT
TCGAAGCCTTTTAATGGCTCCAGTTCTGAGCAGAACATTAGCCACTACCT
CTTTAGTGTCACTTCCAACTTCAACTCCTTTTTCTTTTAAACACTCCAAC
AACAAGGCCTTCAATTTCAGAAGCGCTTTTTTGCCGAGAAGTGGCGGCTT
AACTTGTGCTGGATTGAAGTGGAACCTTCAGAAGAGGAATAAAAGAGTCG
GGATACGGTGTGATGCTGCTGTTGCTGACAAAGAGGCCCCTGATACTTCT
GGTGAGAAGTTCGAGTACCAAGCCGAGGTCAGTCGCCTGATGGACTTGAT
TGTTCATAGTCTGTACAGCCACAAGGAGGTGTTCCTGCGAGAGCTTGTGA
GCAATGCAAGTGATGCTTTGGATAAGTTGAGATTTTTAAGTGTTACCGAG
CCCTCTCTTCTTGGAGATGCTGGCGATCTTGAGATTCGCATCAAGCCTGA
TCCAGAAAATGGGACCATCACCATAACGGATACTGGTATTGGAATGACTA
AAGAAGA
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