CX287287

Overview
NameCX287287
Unique NameCX287287
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length557
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HTPG_YERPN (Chaperone protein htpG OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=htpG PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.746e-14
Identity = 35/64 (54.69%), Postives = 50/64 (78.12%), Query Frame = 1
Query:  316 YQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE 507
            +Q+EV +L+ L++HSLYS+KE+FLREL+SNASDA DKLRF +++ P L    G+L +R+  D E
Sbjct:   11 FQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPELFEGDGELRVRLSFDKE 74          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HTPG_YERPE (Chaperone protein htpG OS=Yersinia pestis GN=htpG PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.746e-14
Identity = 35/64 (54.69%), Postives = 50/64 (78.12%), Query Frame = 1
Query:  316 YQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE 507
            +Q+EV +L+ L++HSLYS+KE+FLREL+SNASDA DKLRF +++ P L    G+L +R+  D E
Sbjct:    9 FQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPELFEGDGELRVRLSFDKE 72          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HTPG_YERPA (Chaperone protein htpG OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=htpG PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.746e-14
Identity = 35/64 (54.69%), Postives = 50/64 (78.12%), Query Frame = 1
Query:  316 YQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE 507
            +Q+EV +L+ L++HSLYS+KE+FLREL+SNASDA DKLRF +++ P L    G+L +R+  D E
Sbjct:   11 FQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPELFEGDGELRVRLSFDKE 74          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HTPG_YERE8 (Chaperone protein htpG OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=htpG PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.746e-14
Identity = 35/64 (54.69%), Postives = 50/64 (78.12%), Query Frame = 1
Query:  316 YQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE 507
            +Q+EV +L+ L++HSLYS+KE+FLREL+SNASDA DKLRF +++ P L    G+L +R+  D E
Sbjct:   11 FQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSHPELFEGDGELRVRLSFDKE 74          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HTPG_SHIDS (Chaperone protein htpG OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=htpG PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.746e-14
Identity = 35/64 (54.69%), Postives = 50/64 (78.12%), Query Frame = 1
Query:  316 YQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE 507
            +Q+EV +L+ L++HSLYS+KE+FLREL+SNASDA DKLRF S++ P L    G+L +R+  D +
Sbjct:    9 FQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRSLSNPDLYEGDGELRVRVSFDKD 72          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HTPG_RICAH (Chaperone protein htpG OS=Rickettsia akari (strain Hartford) GN=htpG PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.746e-14
Identity = 34/69 (49.28%), Postives = 53/69 (76.81%), Query Frame = 1
Query:  304 EKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPEN 510
            EK ++ AEV ++++L++HSLYS+KE+F+REL+SNASDA DKLR+LS +   L+    + +I +K D +N
Sbjct:    4 EKKKFDAEVGKILNLMIHSLYSNKEIFMRELISNASDACDKLRYLSQSHSELVASDSNFKITVKVDKDN 72          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HTPG_PHOLL (Chaperone protein htpG OS=Photorhabdus luminescens subsp. laumondii GN=htpG PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.746e-14
Identity = 35/64 (54.69%), Postives = 51/64 (79.69%), Query Frame = 1
Query:  316 YQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE 507
            +Q+EV +L+ L++HSLYS+KE+FLREL+SNASDA DKLRF +++ P L  + G+L +R+  D E
Sbjct:    9 FQSEVKQLLQLMIHSLYSNKEIFLRELISNASDAADKLRFRALSVPKLYENDGELRVRLSFDKE 72          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HSP82_MAIZE (Heat shock protein 82 OS=Zea mays GN=HSP82 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.746e-14
Identity = 36/66 (54.55%), Postives = 53/66 (80.30%), Query Frame = 1
Query:  304 EKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPD 501
            E F +QAE+++L+ LI+++ YS+KE+FLREL+SNASDALDK+RF S+T+ S +    +L IR+ PD
Sbjct:   15 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNASDALDKIRFESLTDKSNVNAQPELFIRLVPD 80          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: H90B2_HUMAN (Putative heat shock protein HSP 90-beta 2 OS=Homo sapiens GN=HSP90AB2P PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 6.746e-14
Identity = 36/68 (52.94%), Postives = 54/68 (79.41%), Query Frame = 1
Query:  304 EKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE 507
            E F +QAE+++LM LI+++ YS+KE+FL EL+SNASDALDK+R+ S+T+PS L    +L+I I P+ +
Sbjct:   13 ETFAFQAEIAQLMSLIINTFYSNKEIFLWELISNASDALDKIRYESLTDPSKLDSGKELKIDIIPNTQ 80          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HTPG_SHESW (Chaperone protein htpG OS=Shewanella sp. (strain W3-18-1) GN=htpG PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.811e-14
Identity = 36/68 (52.94%), Postives = 51/68 (75.00%), Query Frame = 1
Query:  304 EKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE 507
            E   +Q EV +L+ L++HSLYS+KE+FLRELVSNA+DA DKLR+L++T  +L    G+L +RI  D +
Sbjct:    5 ETHGFQTEVKQLLHLMIHSLYSNKEIFLRELVSNAADAADKLRYLALTNDALYEGDGELRVRISADKD 72          
The following BLAST results are available for this feature:
BLAST of CX287287 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 366
Match NameE-valueIdentityDescription
HTPG_YERPN6.746e-1454.69Chaperone protein htpG OS=Yersinia pestis bv. Anti... [more]
HTPG_YERPE6.746e-1454.69Chaperone protein htpG OS=Yersinia pestis GN=htpG ... [more]
HTPG_YERPA6.746e-1454.69Chaperone protein htpG OS=Yersinia pestis bv. Anti... [more]
HTPG_YERE86.746e-1454.69Chaperone protein htpG OS=Yersinia enterocolitica ... [more]
HTPG_SHIDS6.746e-1454.69Chaperone protein htpG OS=Shigella dysenteriae ser... [more]
HTPG_RICAH6.746e-1449.28Chaperone protein htpG OS=Rickettsia akari (strain... [more]
HTPG_PHOLL6.746e-1454.69Chaperone protein htpG OS=Photorhabdus luminescens... [more]
HSP82_MAIZE6.746e-1454.55Heat shock protein 82 OS=Zea mays GN=HSP82 PE=3 SV... [more]
H90B2_HUMAN6.746e-1452.94Putative heat shock protein HSP 90-beta 2 OS=Homo ... [more]
HTPG_SHESW8.811e-1452.94Chaperone protein htpG OS=Shewanella sp. (strain W... [more]

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Properties
Property NameValue
Genbank descriptionC01006H04SK Veg1 Citrus clementina cDNA clone C01006H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287287 ID=CX287287; Name=CX287287; organism=Citrus clementina; type=EST; length=557bp
GTTCAAACCATCTTATTAAGCCAGCCCATTATCTTCTTCTCTCTCTGTAT
TCGAAGCCTTTTAATGGCTCCAGTTCTGAGCAGAACATTAGCCACTACCT
CTTTAGTGTCACTTCCAACTTCAACTCCTTTTTCTTTTAAACACTCCAAC
AACAAGGCCTTCAATTTCAGAAGCGCTTTTTTGCCGAGAAGTGGCGGCTT
AACTTGTGCTGGATTGAAGTGGAACCTTCAGAAGAGGAATAAAAGAGTCG
GGATACGGTGTGATGCTGCTGTTGCTGACAAAGAGGCCCCTGATACTTCT
GGTGAGAAGTTCGAGTACCAAGCCGAGGTCAGTCGCCTGATGGACTTGAT
TGTTCATAGTCTGTACAGCCACAAGGAGGTGTTCCTGCGAGAGCTTGTGA
GCAATGCAAGTGATGCTTTGGATAAGTTGAGATTTTTAAGTGTTACCGAG
CCCTCTCTTCTTGGAGATGCTGGCGATCTTGAGATTCGCATCAAGCCTGA
TCCAGAAAATGGGACCATCACCATAACGGATACTGGTATTGGAATGACTA
AAGAAGA
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