CX287287

Overview
NameCX287287
Unique NameCX287287
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length557
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HTPG_AGGAC (Chaperone protein htpG OS=Aggregatibacter actinomycetemcomitans GN=htpG PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.811e-14
Identity = 37/71 (52.11%), Postives = 52/71 (73.24%), Query Frame = 1
Query:  295 TSGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE 507
            T+ E   +Q+EV +L+ L++HSLYS+KE+FLREL+SNASDA DKLRF +++ P L    G+L + I  D E
Sbjct:    3 TNQETRGFQSEVKQLLQLMIHSLYSNKEIFLRELISNASDAADKLRFKALSNPDLYAGDGELRVCISFDSE 73          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HS902_HUMAN (Putative heat shock protein HSP 90-alpha A2 OS=Homo sapiens GN=HSP90AA2 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 8.811e-14
Identity = 35/78 (44.87%), Postives = 57/78 (73.08%), Query Frame = 1
Query:  277 DKEAPDTSGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPEN 510
            D+   +   E F +QAE+++LM LI+++ YS+KE+FLREL+SN+SDALDK+ + S+T+PS L    +L I + P+ ++
Sbjct:    9 DQPMEEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIWYESLTDPSKLDSGKELHINLIPNKQD 86          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HTPG_RICTY (Chaperone protein htpG OS=Rickettsia typhi GN=htpG PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.151e-13
Identity = 34/69 (49.28%), Postives = 53/69 (76.81%), Query Frame = 1
Query:  304 EKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPEN 510
            EK ++ AEV ++++L++HSLYS+KE+F+REL+SNASDA DKLR+LS +   L+    + +I +K D +N
Sbjct:    4 EKKKFDAEVGKILNLMIHSLYSNKEIFMRELISNASDACDKLRYLSQSNSELISGDSNFKIIVKVDKDN 72          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HTPG_RICPR (Chaperone protein htpG OS=Rickettsia prowazekii GN=htpG PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.151e-13
Identity = 34/69 (49.28%), Postives = 53/69 (76.81%), Query Frame = 1
Query:  304 EKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPEN 510
            EK ++ AEV ++++L++HSLYS+KE+F+REL+SNASDA DKLR+LS +   L+    + +I +K D +N
Sbjct:    4 EKKKFDAEVGKILNLMIHSLYSNKEIFMRELISNASDACDKLRYLSQSNSELIAGDSNFKIIVKVDKDN 72          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HTPG_NATTJ (Chaperone protein htpG OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=htpG PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.151e-13
Identity = 36/66 (54.55%), Postives = 52/66 (78.79%), Query Frame = 1
Query:  313 EYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPEN 510
            E+QAE  RL+D++++S+YS+KE+FLREL+SNASDA+DKL + S+T+ SL  +  D  I+I  D EN
Sbjct:    5 EFQAETKRLLDIVINSIYSNKEIFLRELISNASDAIDKLYYKSLTDNSLDFNKDDYYIKITVDKEN 70          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HTPG_HELHP (Chaperone protein htpG OS=Helicobacter hepaticus GN=htpG PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.151e-13
Identity = 36/67 (53.73%), Postives = 53/67 (79.10%), Query Frame = 1
Query:  307 KFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE 507
            K ++Q E+++L+DL++HSLYSHKE+FLREL+SNASDALDKL +L++T+ +L   + +  I I  D E
Sbjct:    4 KHQFQTEITQLLDLMIHSLYSHKEIFLRELISNASDALDKLSYLTLTQENLKTLSFEPRIDISFDEE 70          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: TRAP1_RAT (Heat shock protein 75 kDa, mitochondrial OS=Rattus norvegicus GN=Trap1 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.503e-13
Identity = 45/122 (36.89%), Postives = 69/122 (56.56%), Query Frame = 1
Query:  142 HSNNKAFNFRSAFLPRSGGLTCAGLKWNLQKRNKRVGIRCDAAVADKEAPDTSGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE 507
            H      +FR      + G++ AG  ++ Q    +      + +++ EA   S  K E+QAE  +L+D++  SLYS KEVF+REL+SNASDAL+KLR   V E  +L    ++EI ++ D E
Sbjct:   35 HLQKTTVHFRDPTQSLASGIS-AGQLYSTQAAEDKKEEALHSIISNTEAVQGSVSKHEFQAETKKLLDIVARSLYSEKEVFIRELISNASDALEKLRHKRVCEGQVL---PEMEIHLQTDAE 152          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HTPG_XYLFT (Chaperone protein htpG OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=htpG PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.503e-13
Identity = 35/64 (54.69%), Postives = 52/64 (81.25%), Query Frame = 1
Query:  316 YQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE 507
            +Q EV +L+ L++HSLYS+KE+FLREL+SNA+DA DKLRF +++ PSLL +  +L IR++ D +
Sbjct:   12 FQTEVKQLLQLMIHSLYSNKEIFLRELISNAADAADKLRFEALSAPSLLEEDPNLRIRVEFDKQ 75          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HTPG_SHISS (Chaperone protein htpG OS=Shigella sonnei (strain Ss046) GN=htpG PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.503e-13
Identity = 34/64 (53.12%), Postives = 50/64 (78.12%), Query Frame = 1
Query:  316 YQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE 507
            +Q+EV +L+ L++HSLYS+KE+FLREL+SNASDA DKLRF +++ P L    G+L +R+  D +
Sbjct:    9 FQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKD 72          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HTPG_SHIFL (Chaperone protein htpG OS=Shigella flexneri GN=htpG PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.503e-13
Identity = 34/64 (53.12%), Postives = 50/64 (78.12%), Query Frame = 1
Query:  316 YQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE 507
            +Q+EV +L+ L++HSLYS+KE+FLREL+SNASDA DKLRF +++ P L    G+L +R+  D +
Sbjct:    9 FQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKD 72          
The following BLAST results are available for this feature:
BLAST of CX287287 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 366
Match NameE-valueIdentityDescription
HTPG_AGGAC8.811e-1452.11Chaperone protein htpG OS=Aggregatibacter actinomy... [more]
HS902_HUMAN8.811e-1444.87Putative heat shock protein HSP 90-alpha A2 OS=Hom... [more]
HTPG_RICTY1.151e-1349.28Chaperone protein htpG OS=Rickettsia typhi GN=htpG... [more]
HTPG_RICPR1.151e-1349.28Chaperone protein htpG OS=Rickettsia prowazekii GN... [more]
HTPG_NATTJ1.151e-1354.55Chaperone protein htpG OS=Natranaerobius thermophi... [more]
HTPG_HELHP1.151e-1353.73Chaperone protein htpG OS=Helicobacter hepaticus G... [more]
TRAP1_RAT1.503e-1336.89Heat shock protein 75 kDa, mitochondrial OS=Rattus... [more]
HTPG_XYLFT1.503e-1354.69Chaperone protein htpG OS=Xylella fastidiosa (stra... [more]
HTPG_SHISS1.503e-1353.13Chaperone protein htpG OS=Shigella sonnei (strain ... [more]
HTPG_SHIFL1.503e-1353.13Chaperone protein htpG OS=Shigella flexneri GN=htp... [more]

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Properties
Property NameValue
Genbank descriptionC01006H04SK Veg1 Citrus clementina cDNA clone C01006H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287287 ID=CX287287; Name=CX287287; organism=Citrus clementina; type=EST; length=557bp
GTTCAAACCATCTTATTAAGCCAGCCCATTATCTTCTTCTCTCTCTGTAT
TCGAAGCCTTTTAATGGCTCCAGTTCTGAGCAGAACATTAGCCACTACCT
CTTTAGTGTCACTTCCAACTTCAACTCCTTTTTCTTTTAAACACTCCAAC
AACAAGGCCTTCAATTTCAGAAGCGCTTTTTTGCCGAGAAGTGGCGGCTT
AACTTGTGCTGGATTGAAGTGGAACCTTCAGAAGAGGAATAAAAGAGTCG
GGATACGGTGTGATGCTGCTGTTGCTGACAAAGAGGCCCCTGATACTTCT
GGTGAGAAGTTCGAGTACCAAGCCGAGGTCAGTCGCCTGATGGACTTGAT
TGTTCATAGTCTGTACAGCCACAAGGAGGTGTTCCTGCGAGAGCTTGTGA
GCAATGCAAGTGATGCTTTGGATAAGTTGAGATTTTTAAGTGTTACCGAG
CCCTCTCTTCTTGGAGATGCTGGCGATCTTGAGATTCGCATCAAGCCTGA
TCCAGAAAATGGGACCATCACCATAACGGATACTGGTATTGGAATGACTA
AAGAAGA
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