CX287287

Overview
NameCX287287
Unique NameCX287287
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length557
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HTPG_SHIBS (Chaperone protein htpG OS=Shigella boydii serotype 4 (strain Sb227) GN=htpG PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.503e-13
Identity = 34/64 (53.12%), Postives = 50/64 (78.12%), Query Frame = 1 
Query:  316 YQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE 507
            +Q+EV +L+ L++HSLYS+KE+FLREL+SNASDA DKLRF +++ P L    G+L +R+  D +
Sbjct:    9 FQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKD 72
[Close]
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HTPG_SALTY (Chaperone protein htpG OS=Salmonella typhimurium GN=htpG PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.503e-13
Identity = 34/64 (53.12%), Postives = 50/64 (78.12%), Query Frame = 1 
Query:  316 YQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE 507
            +Q+EV +L+ L++HSLYS+KE+FLREL+SNASDA DKLRF +++ P L    G+L +R+  D +
Sbjct:    9 FQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKD 72
[Close]
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HTPG_SALTI (Chaperone protein htpG OS=Salmonella typhi GN=htpG PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.503e-13
Identity = 34/64 (53.12%), Postives = 50/64 (78.12%), Query Frame = 1 
Query:  316 YQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE 507
            +Q+EV +L+ L++HSLYS+KE+FLREL+SNASDA DKLRF +++ P L    G+L +R+  D +
Sbjct:    9 FQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKD 72
[Close]
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HTPG_SALPB (Chaperone protein htpG OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=htpG PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.503e-13
Identity = 34/64 (53.12%), Postives = 50/64 (78.12%), Query Frame = 1 
Query:  316 YQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE 507
            +Q+EV +L+ L++HSLYS+KE+FLREL+SNASDA DKLRF +++ P L    G+L +R+  D +
Sbjct:    9 FQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKD 72
[Close]
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HTPG_SALCH (Chaperone protein htpG OS=Salmonella choleraesuis GN=htpG PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 1.503e-13
Identity = 34/64 (53.12%), Postives = 50/64 (78.12%), Query Frame = 1 
Query:  316 YQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE 507
            +Q+EV +L+ L++HSLYS+KE+FLREL+SNASDA DKLRF +++ P L    G+L +R+  D +
Sbjct:    9 FQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKD 72
[Close]
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HTPG_NITEU (Chaperone protein htpG OS=Nitrosomonas europaea GN=htpG PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.503e-13
Identity = 37/68 (54.41%), Postives = 51/68 (75.00%), Query Frame = 1 
Query:  304 EKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE 507
            E   +QAE ++L+ L++HSLYS+KE+FLREL+SNASDA DKLRF  +++ +L     DL+IRI  D E
Sbjct:    8 EHLNFQAEANQLLKLMIHSLYSNKEIFLRELISNASDAADKLRFEGLSDAALYESDPDLKIRIAYDKE 75
[Close]
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HTPG_ECOUT (Chaperone protein htpG OS=Escherichia coli (strain UTI89 / UPEC) GN=htpG PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.503e-13
Identity = 34/64 (53.12%), Postives = 50/64 (78.12%), Query Frame = 1 
Query:  316 YQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE 507
            +Q+EV +L+ L++HSLYS+KE+FLREL+SNASDA DKLRF +++ P L    G+L +R+  D +
Sbjct:    9 FQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKD 72
[Close]
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HTPG_ECOLI (Chaperone protein htpG OS=Escherichia coli (strain K12) GN=htpG PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.503e-13
Identity = 34/64 (53.12%), Postives = 50/64 (78.12%), Query Frame = 1 
Query:  316 YQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE 507
            +Q+EV +L+ L++HSLYS+KE+FLREL+SNASDA DKLRF +++ P L    G+L +R+  D +
Sbjct:    9 FQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKD 72
[Close]
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HTPG_ECOLC (Chaperone protein htpG OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=htpG PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.503e-13
Identity = 34/64 (53.12%), Postives = 50/64 (78.12%), Query Frame = 1 
Query:  316 YQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE 507
            +Q+EV +L+ L++HSLYS+KE+FLREL+SNASDA DKLRF +++ P L    G+L +R+  D +
Sbjct:    9 FQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKD 72
[Close]
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HTPG_ECOL6 (Chaperone protein htpG OS=Escherichia coli O6 GN=htpG PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.503e-13
Identity = 34/64 (53.12%), Postives = 50/64 (78.12%), Query Frame = 1 
Query:  316 YQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE 507
            +Q+EV +L+ L++HSLYS+KE+FLREL+SNASDA DKLRF +++ P L    G+L +R+  D +
Sbjct:    9 FQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKD 72
The following BLAST results are available for this feature:
BLAST of CX287287 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 366
Match NameE-valueIdentityDescription
HTPG_SHIBS1.503e-1353.13Chaperone protein htpG OS=Shigella boydii serotype... [more]
HTPG_SALTY1.503e-1353.13Chaperone protein htpG OS=Salmonella typhimurium G... [more]
HTPG_SALTI1.503e-1353.13Chaperone protein htpG OS=Salmonella typhi GN=htpG... [more]
HTPG_SALPB1.503e-1353.13Chaperone protein htpG OS=Salmonella paratyphi B (... [more]
HTPG_SALCH1.503e-1353.13Chaperone protein htpG OS=Salmonella choleraesuis ... [more]
HTPG_NITEU1.503e-1354.41Chaperone protein htpG OS=Nitrosomonas europaea GN... [more]
HTPG_ECOUT1.503e-1353.13Chaperone protein htpG OS=Escherichia coli (strain... [more]
HTPG_ECOLI1.503e-1353.13Chaperone protein htpG OS=Escherichia coli (strain... [more]
HTPG_ECOLC1.503e-1353.13Chaperone protein htpG OS=Escherichia coli (strain... [more]
HTPG_ECOL61.503e-1353.13Chaperone protein htpG OS=Escherichia coli O6 GN=h... [more]

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Properties
Property NameValue
Genbank descriptionC01006H04SK Veg1 Citrus clementina cDNA clone C01006H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287287 ID=CX287287; Name=CX287287; organism=Citrus clementina; type=EST; length=557bp
GTTCAAACCATCTTATTAAGCCAGCCCATTATCTTCTTCTCTCTCTGTAT
TCGAAGCCTTTTAATGGCTCCAGTTCTGAGCAGAACATTAGCCACTACCT
CTTTAGTGTCACTTCCAACTTCAACTCCTTTTTCTTTTAAACACTCCAAC
AACAAGGCCTTCAATTTCAGAAGCGCTTTTTTGCCGAGAAGTGGCGGCTT
AACTTGTGCTGGATTGAAGTGGAACCTTCAGAAGAGGAATAAAAGAGTCG
GGATACGGTGTGATGCTGCTGTTGCTGACAAAGAGGCCCCTGATACTTCT
GGTGAGAAGTTCGAGTACCAAGCCGAGGTCAGTCGCCTGATGGACTTGAT
TGTTCATAGTCTGTACAGCCACAAGGAGGTGTTCCTGCGAGAGCTTGTGA
GCAATGCAAGTGATGCTTTGGATAAGTTGAGATTTTTAAGTGTTACCGAG
CCCTCTCTTCTTGGAGATGCTGGCGATCTTGAGATTCGCATCAAGCCTGA
TCCAGAAAATGGGACCATCACCATAACGGATACTGGTATTGGAATGACTA
AAGAAGA
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