CX287287

Overview
NameCX287287
Unique NameCX287287
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length557
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HTPG_RHOPB (Chaperone protein htpG OS=Rhodopseudomonas palustris (strain BisB18) GN=htpG PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.226e-16
Identity = 39/72 (54.17%), Postives = 56/72 (77.78%), Query Frame = 1
Query:  292 DTSGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE 507
            DT+ +   +QAEV+ L++L+VHS+YS  ++FLREL+SNASDALDKLR+ S+ +P L+ D G+ +IRI P  E
Sbjct:    5 DTAPQSQPFQAEVAELLNLMVHSVYSETDIFLRELISNASDALDKLRYESIAKPELMADGGEPKIRILPKKE 76          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HTPG_CHLPD (Chaperone protein htpG OS=Chlorobium phaeobacteroides (strain DSM 266) GN=htpG PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.226e-16
Identity = 41/73 (56.16%), Postives = 57/73 (78.08%), Query Frame = 1
Query:  292 DTSG-EKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE 507
            DT G  ++EY+AE+ +L++LIVHSLY+H E+FLREL+SNASDAL K+RF ++T+ S++     L IRI  DPE
Sbjct:    5 DTPGMREYEYKAEMKQLLELIVHSLYTHPEIFLRELISNASDALSKVRFNALTDESIINSDAGLAIRITLDPE 77          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HS90B_CHICK (Heat shock cognate protein HSP 90-beta OS=Gallus gallus GN=HSP90AB1 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.226e-16
Identity = 39/69 (56.52%), Postives = 56/69 (81.16%), Query Frame = 1
Query:  304 EKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPEN 510
            E F +QAE+++LM LI+++ YS+KE+FLREL+SNASDALDK+R+ S+T+PS L    DL+I I P+P +
Sbjct:   13 ETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDTGKDLKIDIVPNPRD 81          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HTPG_RALEJ (Chaperone protein htpG OS=Ralstonia eutropha (strain JMP134) GN=htpG PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.519e-16
Identity = 41/66 (62.12%), Postives = 52/66 (78.79%), Query Frame = 1
Query:  304 EKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPD 501
            E   +QAEV +L+ L++HSLYS+KE+FLRELVSNASDA DKLRF ++  PSLL +  DL IRI+ D
Sbjct:    6 ETMSFQAEVKQLLHLMIHSLYSNKEIFLRELVSNASDATDKLRFEAIANPSLLENDADLAIRIEAD 71          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HTPG_RALEH (Chaperone protein htpG OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=htpG PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.519e-16
Identity = 41/66 (62.12%), Postives = 52/66 (78.79%), Query Frame = 1
Query:  304 EKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPD 501
            E   +QAEV +L+ L++HSLYS+KE+FLRELVSNASDA DKLRF ++  PSLL +  DL IRI+ D
Sbjct:    6 ETMSFQAEVKQLLHLMIHSLYSNKEIFLRELVSNASDATDKLRFEAIANPSLLENDADLAIRIEAD 71          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HTPG_CUPTR (Chaperone protein htpG OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=htpG PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.519e-16
Identity = 41/66 (62.12%), Postives = 52/66 (78.79%), Query Frame = 1
Query:  304 EKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPD 501
            E   +QAEV +L+ L++HSLYS+KE+FLRELVSNASDA DKLRF ++  PSLL +  DL IRI+ D
Sbjct:    6 ETMSFQAEVKQLLHLMIHSLYSNKEIFLRELVSNASDATDKLRFEAIANPSLLENDADLAIRIEAD 71          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HSC90_DICDI (Heat shock cognate 90 kDa protein OS=Dictyostelium discoideum GN=hspD PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 5.519e-16
Identity = 39/66 (59.09%), Postives = 56/66 (84.85%), Query Frame = 1
Query:  304 EKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPD 501
            E+F +QAE+++LM LI+++ YS+KEVFLREL+SNASDALDK+R+ S+T+ S+L    +LEI+I PD
Sbjct:    7 ERFTFQAEINQLMSLIINTFYSNKEVFLRELISNASDALDKIRYQSLTDASVLESKTELEIKIIPD 72          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HTPG_IDILO (Chaperone protein htpG OS=Idiomarina loihiensis GN=htpG PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 7.208e-16
Identity = 39/69 (56.52%), Postives = 54/69 (78.26%), Query Frame = 1
Query:  304 EKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPEN 510
            EK  +Q EV +L+ L++HSLYS+KE+FLRELVSNASDA DKLRF ++++ SL GD  DL +R+  D ++
Sbjct:    8 EKHGFQTEVKQLLHLMIHSLYSNKEIFLRELVSNASDAADKLRFKALSDNSLYGDDSDLHVRVSVDKDS 76          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HS90B_MOUSE (Heat shock protein HSP 90-beta OS=Mus musculus GN=Hsp90ab1 PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 7.208e-16
Identity = 38/68 (55.88%), Postives = 56/68 (82.35%), Query Frame = 1
Query:  304 EKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE 507
            E F +QAE+++LM LI+++ YS+KE+FLREL+SNASDALDK+R+ S+T+PS L    +L+I I P+P+
Sbjct:   13 ETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDILPNPQ 80          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HTPG_BDEBA (Chaperone protein htpG OS=Bdellovibrio bacteriovorus GN=htpG PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 9.413e-16
Identity = 37/64 (57.81%), Postives = 53/64 (82.81%), Query Frame = 1
Query:  316 YQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE 507
            + AE+ +L+D+++HSLYSHKE+FLREL+SNASDA+DKL+F S+T PSLL +     IR++P+ E
Sbjct:    8 FNAEIKQLLDIVIHSLYSHKEIFLRELLSNASDAIDKLKFNSLTHPSLLPENWQPAIRLEPNSE 71          
The following BLAST results are available for this feature:
BLAST of CX287287 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 366
Match NameE-valueIdentityDescription
HTPG_RHOPB4.226e-1654.17Chaperone protein htpG OS=Rhodopseudomonas palustr... [more]
HTPG_CHLPD4.226e-1656.16Chaperone protein htpG OS=Chlorobium phaeobacteroi... [more]
HS90B_CHICK4.226e-1656.52Heat shock cognate protein HSP 90-beta OS=Gallus g... [more]
HTPG_RALEJ5.519e-1662.12Chaperone protein htpG OS=Ralstonia eutropha (stra... [more]
HTPG_RALEH5.519e-1662.12Chaperone protein htpG OS=Ralstonia eutropha (stra... [more]
HTPG_CUPTR5.519e-1662.12Chaperone protein htpG OS=Cupriavidus taiwanensis ... [more]
HSC90_DICDI5.519e-1659.09Heat shock cognate 90 kDa protein OS=Dictyostelium... [more]
HTPG_IDILO7.208e-1656.52Chaperone protein htpG OS=Idiomarina loihiensis GN... [more]
HS90B_MOUSE7.208e-1655.88Heat shock protein HSP 90-beta OS=Mus musculus GN=... [more]
HTPG_BDEBA9.413e-1657.81Chaperone protein htpG OS=Bdellovibrio bacteriovor... [more]

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Properties
Property NameValue
Genbank descriptionC01006H04SK Veg1 Citrus clementina cDNA clone C01006H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287287 ID=CX287287; Name=CX287287; organism=Citrus clementina; type=EST; length=557bp
GTTCAAACCATCTTATTAAGCCAGCCCATTATCTTCTTCTCTCTCTGTAT
TCGAAGCCTTTTAATGGCTCCAGTTCTGAGCAGAACATTAGCCACTACCT
CTTTAGTGTCACTTCCAACTTCAACTCCTTTTTCTTTTAAACACTCCAAC
AACAAGGCCTTCAATTTCAGAAGCGCTTTTTTGCCGAGAAGTGGCGGCTT
AACTTGTGCTGGATTGAAGTGGAACCTTCAGAAGAGGAATAAAAGAGTCG
GGATACGGTGTGATGCTGCTGTTGCTGACAAAGAGGCCCCTGATACTTCT
GGTGAGAAGTTCGAGTACCAAGCCGAGGTCAGTCGCCTGATGGACTTGAT
TGTTCATAGTCTGTACAGCCACAAGGAGGTGTTCCTGCGAGAGCTTGTGA
GCAATGCAAGTGATGCTTTGGATAAGTTGAGATTTTTAAGTGTTACCGAG
CCCTCTCTTCTTGGAGATGCTGGCGATCTTGAGATTCGCATCAAGCCTGA
TCCAGAAAATGGGACCATCACCATAACGGATACTGGTATTGGAATGACTA
AAGAAGA
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