CX287287

Overview
NameCX287287
Unique NameCX287287
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length557
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HTPG_VEREI (Chaperone protein htpG OS=Verminephrobacter eiseniae (strain EF01-2) GN=htpG PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.102e-15
Identity = 37/68 (54.41%), Postives = 52/68 (76.47%), Query Frame = 1
Query:  298 SGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPD 501
            S +   +QAEV++L+ L+ HSLYS++E+FLREL+SNASDA DKLRF  + +P+L  DA  LE+R+  D
Sbjct:    2 SKQTLSFQAEVAQLLHLVTHSLYSNQEIFLRELISNASDACDKLRFAGLNQPALFEDAPQLEVRVSFD 69          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HTPG_SALAI (Chaperone protein htpG OS=Salinispora arenicola (strain CNS-205) GN=htpG PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.102e-15
Identity = 40/70 (57.14%), Postives = 52/70 (74.29%), Query Frame = 1
Query:  298 SGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE 507
            SGE  E+QAE  +L+ L+VHS+YS+K+VFLREL+SNASDALDKLR  S+ +  L  D  DL I I+ D +
Sbjct:    2 SGETLEFQAEARQLLQLMVHSIYSNKDVFLRELISNASDALDKLRLASMRDKDLDVDTSDLHIAIEVDQD 71          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HTPG_HAES2 (Chaperone protein htpG OS=Haemophilus somnus (strain 2336) GN=htpG PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.102e-15
Identity = 39/71 (54.93%), Postives = 54/71 (76.06%), Query Frame = 1
Query:  295 TSGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE 507
            T+ E   +Q+EV +L+ L++HSLYS+KE+FLREL+SNASDA DKLRF +++ P L    GDL++RI  D E
Sbjct:    3 TNQETRGFQSEVKQLLQLMIHSLYSNKEIFLRELISNASDAADKLRFKALSAPELYEGDGDLKVRISFDAE 73          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HTPG_HAES1 (Chaperone protein htpG OS=Haemophilus somnus (strain 129Pt) GN=htpG PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.102e-15
Identity = 39/71 (54.93%), Postives = 54/71 (76.06%), Query Frame = 1
Query:  295 TSGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE 507
            T+ E   +Q+EV +L+ L++HSLYS+KE+FLREL+SNASDA DKLRF +++ P L    GDL++RI  D E
Sbjct:    3 TNQETRGFQSEVKQLLQLMIHSLYSNKEIFLRELISNASDAADKLRFKALSAPELYEGDGDLKVRISFDAE 73          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HTPG_BORPE (Chaperone protein htpG OS=Bordetella pertussis GN=htpG PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.102e-15
Identity = 39/69 (56.52%), Postives = 53/69 (76.81%), Query Frame = 1
Query:  295 TSGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPD 501
            ++ E   +QAEV +L+ L++HSLYS+KE+FLRELVSNASDA DKLRF ++ +P LL   G+L IR+  D
Sbjct:    8 SASETLGFQAEVKQLLHLMIHSLYSNKEIFLRELVSNASDACDKLRFEAIDQPGLLEGDGELAIRVGYD 76          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HS90A_CRIGR (Heat shock protein HSP 90-alpha OS=Cricetulus griseus GN=HSP90AA1 PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 6.102e-15
Identity = 37/78 (47.44%), Postives = 58/78 (74.36%), Query Frame = 1
Query:  277 DKEAPDTSGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPEN 510
            D+   +   E F +QAE+++LM LI+++ YS+KE+FLREL+SN+SDALDK+R+ S+T+PS L    +L I I P+ ++
Sbjct:    9 DQPMEEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINIIPNKQD 86          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HS90A_CHICK (Heat shock protein HSP 90-alpha OS=Gallus gallus GN=HSP90AA1 PE=3 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 6.102e-15
Identity = 39/79 (49.37%), Postives = 60/79 (75.95%), Query Frame = 1
Query:  268 AVADKEAP-DTSGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPD 501
            AV  ++ P +   E F +QAE+++LM LI+++ YS+KE+FLREL+SN+SDALDK+R+ S+T+PS L    DL+I + P+
Sbjct:    4 AVQTQDQPMEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKDLKINLIPN 82          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HTPG_PSYCK (Chaperone protein htpG OS=Psychrobacter cryohalolentis (strain K5) GN=htpG PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.969e-15
Identity = 40/84 (47.62%), Postives = 60/84 (71.43%), Query Frame = 1
Query:  256 RCDAAVADKEAPDTSGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE 507
            + D+   DK +P+   +K  ++AEV++L+ L+ HSLYS+ ++F+RELVSNASDA DKLRF +  + SL  D G+L+IRI  D +
Sbjct:   11 KVDSINVDKSSPEL--KKHTFEAEVAQLLHLVTHSLYSNSDIFVRELVSNASDACDKLRFEATNDDSLYEDDGELKIRIAVDED 92          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HTPG_PSEU2 (Chaperone protein htpG OS=Pseudomonas syringae pv. syringae (strain B728a) GN=htpG PE=3 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 7.969e-15
Identity = 37/72 (51.39%), Postives = 55/72 (76.39%), Query Frame = 1
Query:  292 DTSGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE 507
            +T  E   +Q EV +L+ L++HSLYS+KE+FLREL+SNASDA+DKLRF ++++P LL    +L+IR+  D +
Sbjct:    4 ETQKETLGFQTEVKQLLHLMIHSLYSNKEIFLRELISNASDAVDKLRFEALSKPELLEGGAELKIRVSFDKD 75          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HTPG_PSEFS (Chaperone protein htpG OS=Pseudomonas fluorescens (strain SBW25) GN=htpG PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.969e-15
Identity = 37/72 (51.39%), Postives = 55/72 (76.39%), Query Frame = 1
Query:  292 DTSGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE 507
            +T  E   +Q EV +L+ L++HSLYS+KE+FLREL+SNASDA+DKLRF ++++P LL    +L+IR+  D +
Sbjct:    6 ETQKETLGFQTEVKQLLHLMIHSLYSNKEIFLRELISNASDAVDKLRFEALSKPELLEGGAELKIRVSFDKD 77          
The following BLAST results are available for this feature:
BLAST of CX287287 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 366
Match NameE-valueIdentityDescription
HTPG_VEREI6.102e-1554.41Chaperone protein htpG OS=Verminephrobacter eiseni... [more]
HTPG_SALAI6.102e-1557.14Chaperone protein htpG OS=Salinispora arenicola (s... [more]
HTPG_HAES26.102e-1554.93Chaperone protein htpG OS=Haemophilus somnus (stra... [more]
HTPG_HAES16.102e-1554.93Chaperone protein htpG OS=Haemophilus somnus (stra... [more]
HTPG_BORPE6.102e-1556.52Chaperone protein htpG OS=Bordetella pertussis GN=... [more]
HS90A_CRIGR6.102e-1547.44Heat shock protein HSP 90-alpha OS=Cricetulus gris... [more]
HS90A_CHICK6.102e-1549.37Heat shock protein HSP 90-alpha OS=Gallus gallus G... [more]
HTPG_PSYCK7.969e-1547.62Chaperone protein htpG OS=Psychrobacter cryohalole... [more]
HTPG_PSEU27.969e-1551.39Chaperone protein htpG OS=Pseudomonas syringae pv.... [more]
HTPG_PSEFS7.969e-1551.39Chaperone protein htpG OS=Pseudomonas fluorescens ... [more]

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Properties
Property NameValue
Genbank descriptionC01006H04SK Veg1 Citrus clementina cDNA clone C01006H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287287 ID=CX287287; Name=CX287287; organism=Citrus clementina; type=EST; length=557bp
GTTCAAACCATCTTATTAAGCCAGCCCATTATCTTCTTCTCTCTCTGTAT
TCGAAGCCTTTTAATGGCTCCAGTTCTGAGCAGAACATTAGCCACTACCT
CTTTAGTGTCACTTCCAACTTCAACTCCTTTTTCTTTTAAACACTCCAAC
AACAAGGCCTTCAATTTCAGAAGCGCTTTTTTGCCGAGAAGTGGCGGCTT
AACTTGTGCTGGATTGAAGTGGAACCTTCAGAAGAGGAATAAAAGAGTCG
GGATACGGTGTGATGCTGCTGTTGCTGACAAAGAGGCCCCTGATACTTCT
GGTGAGAAGTTCGAGTACCAAGCCGAGGTCAGTCGCCTGATGGACTTGAT
TGTTCATAGTCTGTACAGCCACAAGGAGGTGTTCCTGCGAGAGCTTGTGA
GCAATGCAAGTGATGCTTTGGATAAGTTGAGATTTTTAAGTGTTACCGAG
CCCTCTCTTCTTGGAGATGCTGGCGATCTTGAGATTCGCATCAAGCCTGA
TCCAGAAAATGGGACCATCACCATAACGGATACTGGTATTGGAATGACTA
AAGAAGA
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