CX287287

Overview
NameCX287287
Unique NameCX287287
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length557
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HTPG_PSEF5 (Chaperone protein htpG OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=htpG PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.969e-15
Identity = 37/72 (51.39%), Postives = 55/72 (76.39%), Query Frame = 1
Query:  292 DTSGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE 507
            +T  E   +Q EV +L+ L++HSLYS+KE+FLREL+SNASDA+DKLRF ++++P LL    +L+IR+  D +
Sbjct:    4 ETQKETLGFQTEVKQLLHLMIHSLYSNKEIFLRELISNASDAVDKLRFEALSKPELLEGGAELKIRVSFDKD 75          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HTPG_PSE14 (Chaperone protein htpG OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=htpG PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.969e-15
Identity = 37/72 (51.39%), Postives = 55/72 (76.39%), Query Frame = 1
Query:  292 DTSGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE 507
            +T  E   +Q EV +L+ L++HSLYS+KE+FLREL+SNASDA+DKLRF ++++P LL    +L+IR+  D +
Sbjct:    4 ETQKETLGFQTEVKQLLHLMIHSLYSNKEIFLRELISNASDAVDKLRFEALSKPELLEGGAELKIRVSFDKD 75          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HTPG_ERWCT (Chaperone protein htpG OS=Erwinia carotovora subsp. atroseptica GN=htpG PE=3 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 7.969e-15
Identity = 36/64 (56.25%), Postives = 50/64 (78.12%), Query Frame = 1
Query:  316 YQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE 507
            +Q+EV +L+ L++HSLYS+KE+FLREL+SNASDA DKLRF +++ P L    GDL +R+  D E
Sbjct:    9 FQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSTPELYAGDGDLRVRVSTDKE 72          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HTPG_DECAR (Chaperone protein htpG OS=Dechloromonas aromatica (strain RCB) GN=htpG PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.969e-15
Identity = 39/79 (49.37%), Postives = 57/79 (72.15%), Query Frame = 1
Query:  271 VADKEAPDTSGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE 507
            +++    + + E   +QAEV +L+ L++HSLYS+KE+FLRELVSNASDA DKLRF ++   +L GD  +L+IRI  D +
Sbjct:    1 MSESATANANRETLGFQAEVKQLLQLMIHSLYSNKEIFLRELVSNASDACDKLRFEALNNSALYGDDSELKIRIAFDKD 79          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HTPG_XANC5 (Chaperone protein htpG OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=htpG PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.041e-14
Identity = 37/72 (51.39%), Postives = 54/72 (75.00%), Query Frame = 1
Query:  292 DTSGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE 507
            +T  +   +Q EV +L+ L++HSLYS+KE+FLRELVSNA+DA DKLRF ++ +P LL  +G+L IR+  D +
Sbjct:    4 ETDKQTLGFQTEVKQLLQLMIHSLYSNKEIFLRELVSNAADAADKLRFEALVKPELLEGSGELRIRVDYDKD 75          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HTPG_XANAC (Chaperone protein htpG OS=Xanthomonas axonopodis pv. citri GN=htpG PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.041e-14
Identity = 37/72 (51.39%), Postives = 54/72 (75.00%), Query Frame = 1
Query:  292 DTSGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE 507
            +T  +   +Q EV +L+ L++HSLYS+KE+FLRELVSNA+DA DKLRF ++ +P LL  +G+L IR+  D +
Sbjct:    4 ETDKQTLGFQTEVKQLLQLMIHSLYSNKEIFLRELVSNAADAADKLRFEALVKPELLEGSGELRIRVDYDKD 75          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HTPG_PSESM (Chaperone protein htpG OS=Pseudomonas syringae pv. tomato GN=htpG PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.041e-14
Identity = 37/72 (51.39%), Postives = 54/72 (75.00%), Query Frame = 1
Query:  292 DTSGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE 507
            +T  E   +Q EV +L+ L++HSLYS+KE+FLREL+SNASDA+DKLRF +++ P LL    +L+IR+  D +
Sbjct:    4 ETQKETLGFQTEVKQLLHLMIHSLYSNKEIFLRELISNASDAVDKLRFEALSRPELLEGGAELKIRVSFDKD 75          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HTPG_PSEAE (Chaperone protein htpG OS=Pseudomonas aeruginosa GN=htpG PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.041e-14
Identity = 38/72 (52.78%), Postives = 52/72 (72.22%), Query Frame = 1
Query:  292 DTSGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE 507
            +T  E   +Q EV +L+ L++HSLYS+KE+FLREL+SNASDA DKLRF ++  P LL    +L+IR+  D E
Sbjct:    4 ETQKETLGFQTEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFEALANPELLEGGAELKIRVSFDKE 75          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HTPG_PSEA7 (Chaperone protein htpG OS=Pseudomonas aeruginosa (strain PA7) GN=htpG PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.041e-14
Identity = 38/72 (52.78%), Postives = 52/72 (72.22%), Query Frame = 1
Query:  292 DTSGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE 507
            +T  E   +Q EV +L+ L++HSLYS+KE+FLREL+SNASDA DKLRF ++  P LL    +L+IR+  D E
Sbjct:    4 ETQKETLGFQTEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFEALANPELLEGGAELKIRVSFDKE 75          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HTPG_BORA1 (Chaperone protein htpG OS=Bordetella avium (strain 197N) GN=htpG PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.041e-14
Identity = 38/70 (54.29%), Postives = 52/70 (74.29%), Query Frame = 1
Query:  292 DTSGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPD 501
            + + E   +QAEV +L+ L++HSLYS+KE+FLRELVSNASDA DKLRF ++ +P LL    +L IR+  D
Sbjct:    4 NATSETLGFQAEVKQLLHLMIHSLYSNKEIFLRELVSNASDACDKLRFEAIDQPELLAGDSELAIRVSYD 73          
The following BLAST results are available for this feature:
BLAST of CX287287 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 366
Match NameE-valueIdentityDescription
HTPG_PSEF57.969e-1551.39Chaperone protein htpG OS=Pseudomonas fluorescens ... [more]
HTPG_PSE147.969e-1551.39Chaperone protein htpG OS=Pseudomonas syringae pv.... [more]
HTPG_ERWCT7.969e-1556.25Chaperone protein htpG OS=Erwinia carotovora subsp... [more]
HTPG_DECAR7.969e-1549.37Chaperone protein htpG OS=Dechloromonas aromatica ... [more]
HTPG_XANC51.041e-1451.39Chaperone protein htpG OS=Xanthomonas campestris p... [more]
HTPG_XANAC1.041e-1451.39Chaperone protein htpG OS=Xanthomonas axonopodis p... [more]
HTPG_PSESM1.041e-1451.39Chaperone protein htpG OS=Pseudomonas syringae pv.... [more]
HTPG_PSEAE1.041e-1452.78Chaperone protein htpG OS=Pseudomonas aeruginosa G... [more]
HTPG_PSEA71.041e-1452.78Chaperone protein htpG OS=Pseudomonas aeruginosa (... [more]
HTPG_BORA11.041e-1454.29Chaperone protein htpG OS=Bordetella avium (strain... [more]

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Properties
Property NameValue
Genbank descriptionC01006H04SK Veg1 Citrus clementina cDNA clone C01006H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287287 ID=CX287287; Name=CX287287; organism=Citrus clementina; type=EST; length=557bp
GTTCAAACCATCTTATTAAGCCAGCCCATTATCTTCTTCTCTCTCTGTAT
TCGAAGCCTTTTAATGGCTCCAGTTCTGAGCAGAACATTAGCCACTACCT
CTTTAGTGTCACTTCCAACTTCAACTCCTTTTTCTTTTAAACACTCCAAC
AACAAGGCCTTCAATTTCAGAAGCGCTTTTTTGCCGAGAAGTGGCGGCTT
AACTTGTGCTGGATTGAAGTGGAACCTTCAGAAGAGGAATAAAAGAGTCG
GGATACGGTGTGATGCTGCTGTTGCTGACAAAGAGGCCCCTGATACTTCT
GGTGAGAAGTTCGAGTACCAAGCCGAGGTCAGTCGCCTGATGGACTTGAT
TGTTCATAGTCTGTACAGCCACAAGGAGGTGTTCCTGCGAGAGCTTGTGA
GCAATGCAAGTGATGCTTTGGATAAGTTGAGATTTTTAAGTGTTACCGAG
CCCTCTCTTCTTGGAGATGCTGGCGATCTTGAGATTCGCATCAAGCCTGA
TCCAGAAAATGGGACCATCACCATAACGGATACTGGTATTGGAATGACTA
AAGAAGA
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