CX287287

Overview
NameCX287287
Unique NameCX287287
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length557
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2482 contig Ccv1_Contig2482:5..561. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HTPG_ACIAD (Chaperone protein htpG OS=Acinetobacter sp. (strain ADP1) GN=htpG PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.041e-14
Identity = 36/72 (50.00%), Postives = 51/72 (70.83%), Query Frame = 1
Query:  295 TSGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPEN 510
            T+ + + +QAEV++L+ L+ HSLYS+ E+FLREL+SNASDA DKLRF  +  P    D  +L +R+  D EN
Sbjct:    5 TATQNYSFQAEVAQLLHLVTHSLYSNPEIFLRELISNASDACDKLRFEGINHPEYYEDDANLRVRVSLDKEN 76          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HSP83_IPONI (Heat shock protein 83 OS=Ipomoea nil GN=HSP83A PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.041e-14
Identity = 38/69 (55.07%), Postives = 54/69 (78.26%), Query Frame = 1
Query:  304 EKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPEN 510
            E F +QAE+++L+ LI+++ YS+KE+FLREL+SNASDALDK+RF S+T+ S L    +L IR+ PD  N
Sbjct:   10 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNASDALDKIRFESLTDKSKLDAQPELFIRLVPDKTN 78          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HS90A_RAT (Heat shock protein HSP 90-alpha OS=Rattus norvegicus GN=Hsp90aa1 PE=1 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 1.041e-14
Identity = 36/78 (46.15%), Postives = 58/78 (74.36%), Query Frame = 1
Query:  277 DKEAPDTSGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPEN 510
            D+   +   E F +QAE+++LM LI+++ YS+KE+FLREL+SN+SDALDK+R+ S+T+PS L    +L I + P+ ++
Sbjct:    9 DQPMEEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQD 86          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HS90A_PIG (Heat shock protein HSP 90-alpha OS=Sus scrofa GN=HSP90AA1 PE=2 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 1.041e-14
Identity = 36/78 (46.15%), Postives = 58/78 (74.36%), Query Frame = 1
Query:  277 DKEAPDTSGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPEN 510
            D+   +   E F +QAE+++LM LI+++ YS+KE+FLREL+SN+SDALDK+R+ S+T+PS L    +L I + P+ ++
Sbjct:    9 DQPMEEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQD 86          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HS90A_PANTR (Heat shock protein HSP 90-alpha OS=Pan troglodytes GN=HSP90AA1 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.041e-14
Identity = 36/78 (46.15%), Postives = 58/78 (74.36%), Query Frame = 1
Query:  277 DKEAPDTSGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPEN 510
            D+   +   E F +QAE+++LM LI+++ YS+KE+FLREL+SN+SDALDK+R+ S+T+PS L    +L I + P+ ++
Sbjct:    9 DQPMEEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQD 86          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HS90A_MACFA (Heat shock protein HSP 90-alpha OS=Macaca fascicularis GN=HSP90AA1 PE=2 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 1.041e-14
Identity = 36/78 (46.15%), Postives = 58/78 (74.36%), Query Frame = 1
Query:  277 DKEAPDTSGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPEN 510
            D+   +   E F +QAE+++LM LI+++ YS+KE+FLREL+SN+SDALDK+R+ S+T+PS L    +L I + P+ ++
Sbjct:    9 DQPMEEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQD 86          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HS90A_HUMAN (Heat shock protein HSP 90-alpha OS=Homo sapiens GN=HSP90AA1 PE=1 SV=5)

HSP 1 Score: 79.7221 bits (195), Expect = 1.041e-14
Identity = 36/78 (46.15%), Postives = 58/78 (74.36%), Query Frame = 1
Query:  277 DKEAPDTSGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPEN 510
            D+   +   E F +QAE+++LM LI+++ YS+KE+FLREL+SN+SDALDK+R+ S+T+PS L    +L I + P+ ++
Sbjct:    9 DQPMEEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQD 86          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HS90A_BOVIN (Heat shock protein HSP 90-alpha OS=Bos taurus GN=HSP90AA1 PE=2 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 1.041e-14
Identity = 36/78 (46.15%), Postives = 58/78 (74.36%), Query Frame = 1
Query:  277 DKEAPDTSGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPEN 510
            D+   +   E F +QAE+++LM LI+++ YS+KE+FLREL+SN+SDALDK+R+ S+T+PS L    +L I + P+ ++
Sbjct:    9 DQPMEEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQD 86          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HSP83_DROVI (Heat shock protein 83 (Fragment) OS=Drosophila virilis GN=Hsp83 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.359e-14
Identity = 36/66 (54.55%), Postives = 54/66 (81.82%), Query Frame = 1
Query:  304 EKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPD 501
            E F +QAE+++LM LI+++ YS+KE+FLREL+SNASDALDK+R+ S+T+PS L    +L I++ P+
Sbjct:    6 ETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELYIKLIPN 71          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HSP83_DROSI (Heat shock protein 83 (Fragment) OS=Drosophila simulans GN=Hsp83 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.359e-14
Identity = 36/66 (54.55%), Postives = 54/66 (81.82%), Query Frame = 1
Query:  304 EKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPD 501
            E F +QAE+++LM LI+++ YS+KE+FLREL+SNASDALDK+R+ S+T+PS L    +L I++ P+
Sbjct:    6 ETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELYIKLIPN 71          
The following BLAST results are available for this feature:
BLAST of CX287287 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 366
Match NameE-valueIdentityDescription
HTPG_ACIAD1.041e-1450.00Chaperone protein htpG OS=Acinetobacter sp. (strai... [more]
HSP83_IPONI1.041e-1455.07Heat shock protein 83 OS=Ipomoea nil GN=HSP83A PE=... [more]
HS90A_RAT1.041e-1446.15Heat shock protein HSP 90-alpha OS=Rattus norvegic... [more]
HS90A_PIG1.041e-1446.15Heat shock protein HSP 90-alpha OS=Sus scrofa GN=H... [more]
HS90A_PANTR1.041e-1446.15Heat shock protein HSP 90-alpha OS=Pan troglodytes... [more]
HS90A_MACFA1.041e-1446.15Heat shock protein HSP 90-alpha OS=Macaca fascicul... [more]
HS90A_HUMAN1.041e-1446.15Heat shock protein HSP 90-alpha OS=Homo sapiens GN... [more]
HS90A_BOVIN1.041e-1446.15Heat shock protein HSP 90-alpha OS=Bos taurus GN=H... [more]
HSP83_DROVI1.359e-1454.55Heat shock protein 83 (Fragment) OS=Drosophila vir... [more]
HSP83_DROSI1.359e-1454.55Heat shock protein 83 (Fragment) OS=Drosophila sim... [more]

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Properties
Property NameValue
Genbank descriptionC01006H04SK Veg1 Citrus clementina cDNA clone C01006H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287287 ID=CX287287; Name=CX287287; organism=Citrus clementina; type=EST; length=557bp
GTTCAAACCATCTTATTAAGCCAGCCCATTATCTTCTTCTCTCTCTGTAT
TCGAAGCCTTTTAATGGCTCCAGTTCTGAGCAGAACATTAGCCACTACCT
CTTTAGTGTCACTTCCAACTTCAACTCCTTTTTCTTTTAAACACTCCAAC
AACAAGGCCTTCAATTTCAGAAGCGCTTTTTTGCCGAGAAGTGGCGGCTT
AACTTGTGCTGGATTGAAGTGGAACCTTCAGAAGAGGAATAAAAGAGTCG
GGATACGGTGTGATGCTGCTGTTGCTGACAAAGAGGCCCCTGATACTTCT
GGTGAGAAGTTCGAGTACCAAGCCGAGGTCAGTCGCCTGATGGACTTGAT
TGTTCATAGTCTGTACAGCCACAAGGAGGTGTTCCTGCGAGAGCTTGTGA
GCAATGCAAGTGATGCTTTGGATAAGTTGAGATTTTTAAGTGTTACCGAG
CCCTCTCTTCTTGGAGATGCTGGCGATCTTGAGATTCGCATCAAGCCTGA
TCCAGAAAATGGGACCATCACCATAACGGATACTGGTATTGGAATGACTA
AAGAAGA
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