CX287296

Overview
NameCX287296
Unique NameCX287296
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length402
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1356 contig Ccv1_Contig1356:6..407. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287296 vs. ExPASy Swiss-Prot
Match: TCPE_MACFA (T-complex protein 1 subunit epsilon OS=Macaca fascicularis GN=CCT5 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.309e-11
Identity = 41/127 (32.28%), Postives = 71/127 (55.91%), Query Frame = 3
Query:   18 AIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGD--EFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKW 392
            A+R +   +   IA A G  IV R  EL    +G  AGL +    G   +    I  CK+ +A T+ +RG +K ++ E +R+L DA+ V RN+I++ ++V GGGA E++ +  + Q++     +E++
Sbjct:  321 AVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGF-AGLVQEISFGTTKDKMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKCPTLEQY 446          
BLAST of CX287296 vs. ExPASy Swiss-Prot
Match: TCPE_HUMAN (T-complex protein 1 subunit epsilon OS=Homo sapiens GN=CCT5 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.309e-11
Identity = 41/127 (32.28%), Postives = 71/127 (55.91%), Query Frame = 3
Query:   18 AIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGD--EFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKW 392
            A+R +   +   IA A G  IV R  EL    +G  AGL +    G   +    I  CK+ +A T+ +RG +K ++ E +R+L DA+ V RN+I++ ++V GGGA E++ +  + Q++     +E++
Sbjct:  321 AVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGF-AGLVQEISFGTTKDKMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKCPTLEQY 446          
BLAST of CX287296 vs. ExPASy Swiss-Prot
Match: TCPA_DROME (T-complex protein 1 subunit alpha OS=Drosophila melanogaster GN=T-cp1 PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 3.309e-11
Identity = 41/135 (30.37%), Postives = 74/135 (54.81%), Query Frame = 3
Query:    3 KAGVSAIRRLRKTDNNRIAKACGAVIVNR------PDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEK 389
            +AG  A+RR++K+D   IAKA GA  +         +    S VG  A + + ++I D+    I   K   A +++LRG +    +E+ER++ DA+ V + ++++ K+V GGG  E  +S  L+  ++S+   E+
Sbjct:  305 EAGAMAVRRVKKSDLKIIAKATGAAFITSLTNMDGEESFDASMVGEAAEVAQ-ERICDDELILIKGTKARAAASIILRGPNDFYCDEMERSVHDALCVVKRVLESKKVVAGGGCVEAALSIYLENFATSLASREQ 438          
BLAST of CX287296 vs. ExPASy Swiss-Prot
Match: TCPZ_YEAST (T-complex protein 1 subunit zeta OS=Saccharomyces cerevisiae GN=CCT6 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.321e-11
Identity = 32/118 (27.12%), Postives = 66/118 (55.93%), Query Frame = 3
Query:    3 KAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLK 356
            K  + A+RR ++ +  R+    G    N  ++L    +G  +GL   + IG+E F ++ +  DPK+CT+L++G++   L + +  ++D +    N++K+  ++PG GA  + +S  L+
Sbjct:  311 KHNILALRRAKRRNMERLQLVTGGEAQNSVEDLSPQILGF-SGLVYQETIGEEKFTYVTENTDPKSCTILIKGSTHYALAQTKDAVRDGLRAVANVLKDKNIIPGAGAFYIALSRYLR 427          
BLAST of CX287296 vs. ExPASy Swiss-Prot
Match: TCPE_SCHPO (T-complex protein 1 subunit epsilon OS=Schizosaccharomyces pombe GN=cct5 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.371e-11
Identity = 40/127 (31.50%), Postives = 73/127 (57.48%), Query Frame = 3
Query:   18 AIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGD--EFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKW 392
            A+R +   +   IA A    IV R ++L    +G+ AG+      G   +    I  C + +A TV +RG++K +++E +R L DA+ V RN+I++ ++V GGGA E++ S  + +++  I GI+++
Sbjct:  323 AVRWVGGPEIELIAIATNGRIVPRFEDLSSDKLGS-AGIVREVSFGTTRDKILVIEKCANSRAVTVFVRGSNKMIVDEAKRALHDALCVVRNLIRDNRVVYGGGAAEISCSLAVTKEAEKIPGIDQY 448          
BLAST of CX287296 vs. ExPASy Swiss-Prot
Match: TCPE_PONAB (T-complex protein 1 subunit epsilon OS=Pongo abelii GN=CCT5 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.371e-11
Identity = 41/127 (32.28%), Postives = 70/127 (55.12%), Query Frame = 3
Query:   18 AIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGD--EFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKW 392
            A+R +   +   IA A G  IV R  EL    +G  AGL +    G   +    I  CK+ +A T+ +RG +K ++ E +R+L DA+ V RN+I++ ++V GGGA E + +  + Q++     +E++
Sbjct:  321 AVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGF-AGLVQEISFGTTKDKMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAETSCALAVSQEADKCPTLEQY 446          
BLAST of CX287296 vs. ExPASy Swiss-Prot
Match: TCPE_ENCCU (T-complex protein 1 subunit epsilon OS=Encephalitozoon cuniculi GN=CCT5 PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.371e-11
Identity = 41/129 (31.78%), Postives = 75/129 (58.14%), Query Frame = 3
Query:    9 GVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKD--PKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEK 389
            G+ A+R +   +   +A   G  IV R ++L+ESD+G        + +G E    IV   +   KA T+L+RGA+  ++ E +R+++DA+   RNI+ N ++V GGG++E++ S  L++ ++   G E+
Sbjct:  312 GLPAVRWVGGHELELLAVHTGGSIVARFEDLEESDLGKAR--VREESLGTENDKIIVVENEGCSKAVTILVRGANDLVIEEAKRSIRDALCAVRNILTNSRIVYGGGSSEMSCSLALERIATGYSGEER 438          
BLAST of CX287296 vs. ExPASy Swiss-Prot
Match: TCPD_DEBHA (T-complex protein 1 subunit delta OS=Debaryomyces hansenii GN=CCT4 PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.371e-11
Identity = 37/135 (27.41%), Postives = 73/135 (54.07%), Query Frame = 3
Query:    3 KAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFI-VDCKDPK-ACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYE 401
            K  +  I+ + + +   ++KA G   +   D   E  +G+   + E++  G        V  K+ K   +++ RGA++ +L+E ER++ DA+ V R ++K   L+ GGGA E+ VS  L  +++ + G+E++ Y+
Sbjct:  312 KLNIMVIKDIERDEIEFLSKATGCKPIADIDNFTEDRLGSADVVEEIESSGSRIVKIDGVSAKNVKPTVSIVCRGANQLVLDETERSIHDALCVVRCLVKEKALIAGGGAPEIEVSRVLMSEANKLSGVEQFVYQ 446          
The following BLAST results are available for this feature:
BLAST of CX287296 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
TCPE_MACFA3.309e-1132.28T-complex protein 1 subunit epsilon OS=Macaca fasc... [more]
TCPE_HUMAN3.309e-1132.28T-complex protein 1 subunit epsilon OS=Homo sapien... [more]
TCPA_DROME3.309e-1130.37T-complex protein 1 subunit alpha OS=Drosophila me... [more]
TCPZ_YEAST4.321e-1127.12T-complex protein 1 subunit zeta OS=Saccharomyces ... [more]
TCPE_SCHPO7.371e-1131.50T-complex protein 1 subunit epsilon OS=Schizosacch... [more]
TCPE_PONAB7.371e-1132.28T-complex protein 1 subunit epsilon OS=Pongo abeli... [more]
TCPE_ENCCU7.371e-1131.78T-complex protein 1 subunit epsilon OS=Encephalito... [more]
TCPD_DEBHA7.371e-1127.41T-complex protein 1 subunit delta OS=Debaryomyces ... [more]

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Properties
Property NameValue
Genbank descriptionC01008A02SK Veg1 Citrus clementina cDNA clone C01008A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287296 ID=CX287296; Name=CX287296; organism=Citrus clementina; type=EST; length=402bp
GCAAGGCTGGCGTTAGTGCAATTAGGAGGCTAAGGAAGACAGACAATAAT
AGAATTGCCAAAGCATGTGGTGCTGTTATTGTGAACAGACCAGATGAATT
GCAGGAATCTGATGTTGGTACTGGGGCTGGGCTGTTTGAGGTTAAGAAAA
TTGGTGATGAATTCTTTGCTTTCATTGTTGATTGCAAAGATCCAAAAGCT
TGTACTGTACTCTTAAGAGGTGCTAGTAAGGATCTCCTGAATGAAGTGGA
AAGAAATTTGCAGGATGCAATGTCTGTGGCAAGAAACATAATCAAGAATC
CAAAACTAGTACCTGGTGGAGGGGCTACAGAATTAACAGTATCTGCCACT
CTAAAACAAAAGAGTTCCTCAATCGAAGGCATCGAAAAGTGGCCTTATGA
AG
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