CX287296

Overview
NameCX287296
Unique NameCX287296
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length402
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1356 contig Ccv1_Contig1356:6..407. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287296 vs. ExPASy Swiss-Prot
Match: TCPZ_BOVIN (T-complex protein 1 subunit zeta OS=Bos taurus GN=CCT6A PE=2 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 7.610e-16
Identity = 40/126 (31.75%), Postives = 74/126 (58.73%), Query Frame = 3
Query:    3 KAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEG 380
            K G+ A+RR ++ +  R+  ACG + +N  D+L    +G  AGL     +G+E F FI  C +P++ T+L++G +K  L +++  ++D +   +N I +  +VPG GA E+ ++  L +   S++G
Sbjct:  307 KEGIIALRRAKRRNMERLTLACGGIALNSLDDLNPDCLGH-AGLVYEYTLGEEKFTFIEKCNNPRSVTLLIKGPNKHTLTQIKDAIRDGLRAVKNAIDDGCVVPGAGAVEVAMAEALVKYKPSVKG 431          
BLAST of CX287296 vs. ExPASy Swiss-Prot
Match: TCPZ_HUMAN (T-complex protein 1 subunit zeta OS=Homo sapiens GN=CCT6A PE=1 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 9.939e-16
Identity = 41/126 (32.54%), Postives = 74/126 (58.73%), Query Frame = 3
Query:    3 KAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEG 380
            K G+ A+RR ++ +  R+  ACG V +N  D+L    +G  AGL     +G+E F FI  C +P++ T+L++G +K  L +++  ++D +   +N I +  +VPG GA E+ ++  L +   S++G
Sbjct:  307 KEGIVALRRAKRRNMERLTLACGGVALNSFDDLSPDCLGH-AGLVYEYTLGEEKFTFIEKCNNPRSVTLLIKGPNKHTLTQIKDAVRDGLRAVKNAIDDGCVVPGAGAVEVAMAEALIKHKPSVKG 431          
BLAST of CX287296 vs. ExPASy Swiss-Prot
Match: TCPW_BOVIN (T-complex protein 1 subunit zeta-2 OS=Bos taurus GN=CCT6B PE=2 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 9.939e-16
Identity = 41/126 (32.54%), Postives = 76/126 (60.32%), Query Frame = 3
Query:    3 KAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEG 380
            K G+ A+RR ++ +  R++ ACG V VN  ++L    +G  AGL     +G+E + FI DC +P++ T+L++G +K  L +++  ++D +   +N I++  +VPG GA E+ ++  L     +I+G
Sbjct:  307 KHGILALRRAKRRNMERLSLACGGVAVNSVEDLSVDCLGH-AGLVYEYTLGEEKYTFIEDCINPRSVTLLVKGPNKHTLTQIKDAVRDGLRAIKNAIEDGCVVPGAGAVEVVIAEALVTYKHTIQG 431          
BLAST of CX287296 vs. ExPASy Swiss-Prot
Match: TCPZ_MOUSE (T-complex protein 1 subunit zeta OS=Mus musculus GN=Cct6a PE=1 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 1.695e-15
Identity = 40/126 (31.75%), Postives = 74/126 (58.73%), Query Frame = 3
Query:    3 KAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEG 380
            K G+ A+RR ++ +  R+  ACG + +N  D+L    +G  AGL     +G+E F FI  C +P++ T+L++G +K  L +++  ++D +   +N I +  +VPG GA E+ ++  L +   S++G
Sbjct:  307 KEGIVALRRAKRRNMERLTLACGGIALNSFDDLNPDCLGH-AGLVYEYTLGEEKFTFIEKCNNPRSVTLLVKGPNKHTLTQIKDAIRDGLRAVKNAIDDGCVVPGAGAVEVALAEALIKYKPSVKG 431          
BLAST of CX287296 vs. ExPASy Swiss-Prot
Match: TCPH_BOVIN (T-complex protein 1 subunit eta OS=Bos taurus GN=CCT7 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.214e-15
Identity = 45/118 (38.14%), Postives = 64/118 (54.24%), Query Frame = 3
Query:   27 RLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEG 380
            R+ + D  R   ACG  I    + L  SDV     +FE  +IG E + F   C   K CT++LRG ++  + E ER+L DA+ + R  IKN  +V GGGA E+ +S  L+  S +I G
Sbjct:  313 RVPEEDLKRTMMACGGSIQTSVNALS-SDVLGRCQVFEETQIGGERYNFFTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPG 429          
BLAST of CX287296 vs. ExPASy Swiss-Prot
Match: THSG_SULSH (Thermosome subunit gamma OS=Sulfolobus shibatae GN=thsC PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.892e-15
Identity = 43/129 (33.33%), Postives = 79/129 (61.24%), Query Frame = 3
Query:    3 KAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEK 389
            K+G+ A++ ++++D   +++A GA I +   +  ESD+G  A L EV+ +G   + FI   K  KA TV+++G++  + +E ER+L DA +  RN++  P +V GGGA E  ++  L++ +  + G E+
Sbjct:  301 KSGIIALKNVKRSDIELLSRATGAKIASSMKDANESDLGE-AKLVEVRNLGKNKYLFIQSDK-AKAVTVIIKGSNNMVTDEAERSLNDAFNSIRNLLLEPYIVAGGGAVEEELAKRLRENAGKVPGKEQ 427          
BLAST of CX287296 vs. ExPASy Swiss-Prot
Match: TCPH_SCHPO (Probable T-complex protein 1 subunit eta OS=Schizosaccharomyces pombe GN=cct7 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.933e-15
Identity = 42/118 (35.59%), Postives = 67/118 (56.78%), Query Frame = 3
Query:   27 RLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEG 380
            R+   D NR+ +A G  I +    ++E  +GT    FE ++IG + F     C   K CT++LRG +   + EVER+L DA+ + ++ +KN  +V GGGA E+ +S  L+  S +I G
Sbjct:  318 RVAADDLNRVVQAVGGSIQSTCSNIEEKHLGT-CDTFEERQIGGDRFNLFEGCPKAKTCTLILRGGADQFIAEVERSLHDAIMIVKHALKNNLVVAGGGACEMELSKYLRDYSLTISG 434          
BLAST of CX287296 vs. ExPASy Swiss-Prot
Match: TCPH_CHICK (T-complex protein 1 subunit eta OS=Gallus gallus GN=CCT7 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.933e-15
Identity = 43/118 (36.44%), Postives = 64/118 (54.24%), Query Frame = 3
Query:   27 RLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEG 380
            R+ + D  R   ACG  I    + L +  +G    LFE  +IG + + F   C   K CT++LRG ++  + E ER+L DA+ + R  IKN  +V GGGA E+ +S  L+  S +I G
Sbjct:  313 RVPEEDLKRTMMACGGSIQTSVNALSDDVLGR-CELFEEIQIGGDRYNFFTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPG 429          
BLAST of CX287296 vs. ExPASy Swiss-Prot
Match: TCPZ_DICDI (T-complex protein 1 subunit zeta OS=Dictyostelium discoideum GN=cct6 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.442e-15
Identity = 39/129 (30.23%), Postives = 75/129 (58.14%), Query Frame = 3
Query:    3 KAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEK 389
            KAG+  +RR ++ +  R+  ACG   +N  ++L    +G    ++E + +G+E + F+   K+P +CTVL++G +K  + +++  L+D +   +N I++  +VPGGGA ++   A L +   +I G  K
Sbjct:  309 KAGIMGLRRAKRRNMERLTLACGGTAMNSLEDLTPDCLGHADLVYE-QTLGEEKYTFVEGVKNPFSCTVLIKGPTKHQIEQIKDALRDGLRAVKNTIEDKCVVPGGGAFQIAAYADLMKFKETITGRTK 436          
BLAST of CX287296 vs. ExPASy Swiss-Prot
Match: TCPW_HUMAN (T-complex protein 1 subunit zeta-2 OS=Homo sapiens GN=CCT6B PE=1 SV=4)

HSP 1 Score: 79.337 bits (194), Expect = 6.442e-15
Identity = 42/126 (33.33%), Postives = 76/126 (60.32%), Query Frame = 3
Query:    3 KAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEG 380
            K G+ A+RR ++ +  R++ ACG + VN  ++L    +G  AGL     +G+E F FI +C +P + T+L++G +K  L +V+  ++D +   +N I++  +VPG GA E+ ++  L    +SI+G
Sbjct:  307 KHGIVALRRAKRRNMERLSLACGGMAVNSFEDLTVDCLGH-AGLVYEYTLGEEKFTFIEECVNPCSVTLLVKGPNKHTLTQVKDAIRDGLRAIKNAIEDGCMVPGAGAIEVAMAEALVTYKNSIKG 431          
The following BLAST results are available for this feature:
BLAST of CX287296 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
TCPZ_BOVIN7.610e-1631.75T-complex protein 1 subunit zeta OS=Bos taurus GN=... [more]
TCPZ_HUMAN9.939e-1632.54T-complex protein 1 subunit zeta OS=Homo sapiens G... [more]
TCPW_BOVIN9.939e-1632.54T-complex protein 1 subunit zeta-2 OS=Bos taurus G... [more]
TCPZ_MOUSE1.695e-1531.75T-complex protein 1 subunit zeta OS=Mus musculus G... [more]
TCPH_BOVIN2.214e-1538.14T-complex protein 1 subunit eta OS=Bos taurus GN=C... [more]
THSG_SULSH2.892e-1533.33Thermosome subunit gamma OS=Sulfolobus shibatae GN... [more]
TCPH_SCHPO4.933e-1535.59Probable T-complex protein 1 subunit eta OS=Schizo... [more]
TCPH_CHICK4.933e-1536.44T-complex protein 1 subunit eta OS=Gallus gallus G... [more]
TCPZ_DICDI6.442e-1530.23T-complex protein 1 subunit zeta OS=Dictyostelium ... [more]
TCPW_HUMAN6.442e-1533.33T-complex protein 1 subunit zeta-2 OS=Homo sapiens... [more]

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Properties
Property NameValue
Genbank descriptionC01008A02SK Veg1 Citrus clementina cDNA clone C01008A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287296 ID=CX287296; Name=CX287296; organism=Citrus clementina; type=EST; length=402bp
GCAAGGCTGGCGTTAGTGCAATTAGGAGGCTAAGGAAGACAGACAATAAT
AGAATTGCCAAAGCATGTGGTGCTGTTATTGTGAACAGACCAGATGAATT
GCAGGAATCTGATGTTGGTACTGGGGCTGGGCTGTTTGAGGTTAAGAAAA
TTGGTGATGAATTCTTTGCTTTCATTGTTGATTGCAAAGATCCAAAAGCT
TGTACTGTACTCTTAAGAGGTGCTAGTAAGGATCTCCTGAATGAAGTGGA
AAGAAATTTGCAGGATGCAATGTCTGTGGCAAGAAACATAATCAAGAATC
CAAAACTAGTACCTGGTGGAGGGGCTACAGAATTAACAGTATCTGCCACT
CTAAAACAAAAGAGTTCCTCAATCGAAGGCATCGAAAAGTGGCCTTATGA
AG
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