CX287296

Overview
NameCX287296
Unique NameCX287296
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length402
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1356 contig Ccv1_Contig1356:6..407. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287296 vs. ExPASy Swiss-Prot
Match: TCPZ_CHICK (T-complex protein 1 subunit zeta OS=Gallus gallus GN=CCT6 PE=1 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 8.414e-15
Identity = 38/126 (30.16%), Postives = 74/126 (58.73%), Query Frame = 3
Query:    3 KAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEG 380
            K G+ A+RR ++ +  R+  ACG   +N  ++L    +G  AGL     +G+E + FI  C +P++ T+L+RG +K  L +++  ++D +   +N I++  ++PG GA E+ V+  L +   +++G
Sbjct:  306 KEGIVALRRAKRRNMERLTLACGGTAMNSVEDLTPDCLGH-AGLVYEYTLGEEKYTFIEKCDNPRSVTLLIRGPNKHTLTQIKDAVRDGLRAVKNAIEDGCVIPGAGALEVAVANALVKHKPNVKG 430          
BLAST of CX287296 vs. ExPASy Swiss-Prot
Match: THS3_HALVO (Thermosome subunit 3 OS=Halobacterium volcanii GN=cct3 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.435e-14
Identity = 41/125 (32.80%), Postives = 73/125 (58.40%), Query Frame = 3
Query:    6 AGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEG 380
            AG+ A + ++K+D   +A+A GA  +    +L ESD+G       ++  GD+  AF+      KA T+ LRG ++ ++ E+ER ++DA+ V    I    +VPG GATE+ ++  ++ +++ IEG
Sbjct:  306 AGILAFKSVKKSDARALARATGAKRLGSLSDLDESDLGR-VDAVSIRSFGDDDLAFVEGGAAAKAVTLFLRGGTEHVVYELERAIEDAVDVVVAAIDKGGVVPGAGATEIAIADRIRSEAAGIEG 429          
BLAST of CX287296 vs. ExPASy Swiss-Prot
Match: TCPZ_SCHPO (T-complex protein 1 subunit zeta OS=Schizosaccharomyces pombe GN=cct6 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.435e-14
Identity = 37/125 (29.60%), Postives = 72/125 (57.60%), Query Frame = 3
Query:    3 KAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIE 377
            K G+ A+RR ++ +  R+  ACG V  N  D+L    +G    ++E + +G+E + F+ D KDPK+ T+L+ G +   + +++   +D +   +N +++  L+ G GA E+  +A L+ K ++ E
Sbjct:  306 KNGIMALRRAKRRNMERLQLACGGVAQNSVDDLNPEVLGWAGSVYE-RTLGEEKYTFVEDVKDPKSATILIHGPNTYTIQQIQDATRDGLRAVKNAVEDNCLIVGAGAFEVACAAHLRNKFAAKE 429          
BLAST of CX287296 vs. ExPASy Swiss-Prot
Match: TCPH_PONAB (T-complex protein 1 subunit eta OS=Pongo abelii GN=CCT7 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.435e-14
Identity = 44/118 (37.29%), Postives = 63/118 (53.39%), Query Frame = 3
Query:   27 RLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEG 380
            R+ + D  R   ACG  I    + L  +DV     +FE  +IG E + F   C   K CT +LRG ++  + E ER+L DA+ + R  IKN  +V GGGA E+ +S  L+  S +I G
Sbjct:  313 RVPEEDLKRTMMACGGSIQTSVNALS-ADVLGRCQVFEETQIGGERYNFFTGCPKAKTCTFILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPG 429          
BLAST of CX287296 vs. ExPASy Swiss-Prot
Match: TCPH_MOUSE (T-complex protein 1 subunit eta OS=Mus musculus GN=Cct7 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.435e-14
Identity = 43/118 (36.44%), Postives = 63/118 (53.39%), Query Frame = 3
Query:   27 RLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEG 380
            R+ + D  R   ACG  I    + L    +G    +FE  +IG E + F   C   K CT++LRG ++  + E ER+L DA+ + R  IKN  +V GGGA E+ +S  L+  S +I G
Sbjct:  313 RVPEEDLKRTMMACGGSIQTSVNALVPDVLGH-CQVFEETQIGGERYNFFTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPG 429          
BLAST of CX287296 vs. ExPASy Swiss-Prot
Match: TCPH_HUMAN (T-complex protein 1 subunit eta OS=Homo sapiens GN=CCT7 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 1.435e-14
Identity = 44/118 (37.29%), Postives = 63/118 (53.39%), Query Frame = 3
Query:   27 RLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEG 380
            R+ + D  R   ACG  I    + L  +DV     +FE  +IG E + F   C   K CT +LRG ++  + E ER+L DA+ + R  IKN  +V GGGA E+ +S  L+  S +I G
Sbjct:  313 RVPEEDLKRTMMACGGSIQTSVNALS-ADVLGRCQVFEETQIGGERYNFFTGCPKAKTCTFILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPG 429          
BLAST of CX287296 vs. ExPASy Swiss-Prot
Match: THSG_SULSO (Thermosome subunit gamma OS=Sulfolobus solfataricus GN=thsC PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.874e-14
Identity = 43/129 (33.33%), Postives = 77/129 (59.69%), Query Frame = 3
Query:    3 KAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEK 389
            K G+ A++ ++++D   +++A GA I +   +  ESD+G  A L EV+ +G   + FI   K  KA TV+++G++  + +E ER+L DA +  RN++  P +V GGGA E  ++  L+  +  + G E+
Sbjct:  301 KNGIMALKNVKRSDIELLSRATGAKIASSMKDANESDLGE-AKLVEVRNLGKNKYLFIQSDK-AKAVTVIIKGSNNMITDEAERSLNDAFNSIRNLLLEPYIVAGGGAVEEELAKRLRDDARKVIGKEQ 427          
BLAST of CX287296 vs. ExPASy Swiss-Prot
Match: TCPW_MOUSE (T-complex protein 1 subunit zeta-2 OS=Mus musculus GN=Cct6b PE=2 SV=4)

HSP 1 Score: 77.7962 bits (190), Expect = 1.874e-14
Identity = 40/126 (31.75%), Postives = 72/126 (57.14%), Query Frame = 3
Query:    3 KAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEG 380
            K  + A+RR ++ +  R+  ACG + VN  + L E  +G    +FE   +G+E F FI DC +P + T+L++G +K  L +++  L+D +   +N I++  +VPG GA E+ ++  L      ++G
Sbjct:  307 KHNIVALRRAKRRNLERLTLACGGLAVNSFEGLSEECLGHAGLVFEYA-LGEEKFTFIEDCVNPLSVTLLVKGPNKHTLIQIKDALRDGLRAVKNAIEDGCVVPGAGAVEVAIAEALVNYKHRVQG 431          
BLAST of CX287296 vs. ExPASy Swiss-Prot
Match: TCPH_PLAF7 (T-complex protein 1 subunit eta OS=Plasmodium falciparum (isolate 3D7) GN=PFC0350c PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.123e-14
Identity = 41/116 (35.34%), Postives = 66/116 (56.90%), Query Frame = 3
Query:   27 RLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSI 374
            R+   D  R A A GA++      L +  +GT  G+FE  +IG+E +    +C   K+ T++LRG +K  + EVER++ DA+ +    I N ++VPG G+ E+ +S  L+  S SI
Sbjct:  315 RVEDADLKRTANATGALVQTSLFNLNDDVLGT-CGVFEEVQIGNERYNIFKECLKTKSVTIILRGGAKQFIEEVERSINDAIMIVLRCITNSEIVPGAGSIEMQLSKYLRIYSRSI 429          
BLAST of CX287296 vs. ExPASy Swiss-Prot
Match: TCPA_MACFA (T-complex protein 1 subunit alpha OS=Macaca fascicularis GN=TCP1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.303e-14
Identity = 44/134 (32.84%), Postives = 78/134 (58.21%), Query Frame = 3
Query:    3 KAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVK-----KIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEK 389
            +AG  A+RR+ K D  RIAKA GA I++    L+  +    A L + +     +I D+    I + K   + +++LRGA+  + +E+ER+L DA+ V + ++++  +VPGGGA E  +S  L+  ++S+   E+
Sbjct:  302 EAGAMAVRRVLKRDLKRIAKASGATILSTLANLEGEETFEAAMLGQAEEVVQERICDDELILIKNTKARTSASIILRGANDFMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAALSIYLENYATSMGSREQ 435          
The following BLAST results are available for this feature:
BLAST of CX287296 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
TCPZ_CHICK8.414e-1530.16T-complex protein 1 subunit zeta OS=Gallus gallus ... [more]
THS3_HALVO1.435e-1432.80Thermosome subunit 3 OS=Halobacterium volcanii GN=... [more]
TCPZ_SCHPO1.435e-1429.60T-complex protein 1 subunit zeta OS=Schizosaccharo... [more]
TCPH_PONAB1.435e-1437.29T-complex protein 1 subunit eta OS=Pongo abelii GN... [more]
TCPH_MOUSE1.435e-1436.44T-complex protein 1 subunit eta OS=Mus musculus GN... [more]
TCPH_HUMAN1.435e-1437.29T-complex protein 1 subunit eta OS=Homo sapiens GN... [more]
THSG_SULSO1.874e-1433.33Thermosome subunit gamma OS=Sulfolobus solfataricu... [more]
TCPW_MOUSE1.874e-1431.75T-complex protein 1 subunit zeta-2 OS=Mus musculus... [more]
TCPH_PLAF77.123e-1435.34T-complex protein 1 subunit eta OS=Plasmodium falc... [more]
TCPA_MACFA9.303e-1432.84T-complex protein 1 subunit alpha OS=Macaca fascic... [more]

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Properties
Property NameValue
Genbank descriptionC01008A02SK Veg1 Citrus clementina cDNA clone C01008A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287296 ID=CX287296; Name=CX287296; organism=Citrus clementina; type=EST; length=402bp
GCAAGGCTGGCGTTAGTGCAATTAGGAGGCTAAGGAAGACAGACAATAAT
AGAATTGCCAAAGCATGTGGTGCTGTTATTGTGAACAGACCAGATGAATT
GCAGGAATCTGATGTTGGTACTGGGGCTGGGCTGTTTGAGGTTAAGAAAA
TTGGTGATGAATTCTTTGCTTTCATTGTTGATTGCAAAGATCCAAAAGCT
TGTACTGTACTCTTAAGAGGTGCTAGTAAGGATCTCCTGAATGAAGTGGA
AAGAAATTTGCAGGATGCAATGTCTGTGGCAAGAAACATAATCAAGAATC
CAAAACTAGTACCTGGTGGAGGGGCTACAGAATTAACAGTATCTGCCACT
CTAAAACAAAAGAGTTCCTCAATCGAAGGCATCGAAAAGTGGCCTTATGA
AG
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