CX287296

Overview
NameCX287296
Unique NameCX287296
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length402
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287296 vs. ExPASy Swiss-Prot
Match: TCPA_HUMAN (T-complex protein 1 subunit alpha OS=Homo sapiens GN=TCP1 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.303e-14
Identity = 44/134 (32.84%), Postives = 78/134 (58.21%), Query Frame = 3
Query:    3 KAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVK-----KIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEK 389
            +AG  A+RR+ K D  RIAKA GA I++    L+  +    A L + +     +I D+    I + K   + +++LRGA+  + +E+ER+L DA+ V + ++++  +VPGGGA E  +S  L+  ++S+   E+
Sbjct:  302 EAGAMAVRRVLKRDLKRIAKASGATILSTLANLEGEETFEAAMLGQAEEVVQERICDDELILIKNTKARTSASIILRGANDFMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAALSIYLENYATSMGSREQ 435          
BLAST of CX287296 vs. ExPASy Swiss-Prot
Match: THSB_HALSA (Thermosome subunit beta OS=Halobacterium salinarium GN=thsB PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 1.587e-13
Identity = 41/133 (30.83%), Postives = 74/133 (55.64%), Query Frame = 3
Query:    3 KAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYE 401
            K G+ A+RR +K+D   +     A +V   D   E+DV  G+     +   DE F    + +     T+LLRG++  +++E+ER + DA+ V+   + + +++PGGGATE+ V++ L+  + S+ G E+   E
Sbjct:  311 KEGILAVRRTKKSDIEFLTNVLDASVVTDLDAASEADVVAGS---VTRDSDDELFYVEGESEQAHGVTLLLRGSTDHVVDELERGVSDALDVSAQTLSDGRVLPGGGATEVEVASRLRDFADSVSGREQLAVE 440          
BLAST of CX287296 vs. ExPASy Swiss-Prot
Match: TCPZ_CAEEL (T-complex protein 1 subunit zeta OS=Caenorhabditis elegans GN=cct-6 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.587e-13
Identity = 38/127 (29.92%), Postives = 70/127 (55.12%), Query Frame = 3
Query:    9 GVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEK 389
            G+ A+RR ++ +  R+  A G   VN  D+L   D+G  AGL     +G+E + FI +C+ PK+ T+L++G +K  + +++  + D +    N I +  ++PG  A E+     LK+   +++G  K
Sbjct:  313 GILALRRAKRRNMERLQLAVGGEAVNSVDDLTPEDLGW-AGLVYEHSLGEEKYTFIEECRAPKSVTLLIKGPNKHTITQIKDAIHDGLRAVFNTIVDKAVLPGAAAFEIAAYVMLKKDVENLKGRAK 438          
BLAST of CX287296 vs. ExPASy Swiss-Prot
Match: TCPE_ARATH (T-complex protein 1 subunit epsilon OS=Arabidopsis thaliana GN=At1g24510 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.072e-13
Identity = 45/127 (35.43%), Postives = 69/127 (54.33%), Query Frame = 3
Query:   18 AIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGD--EFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKW 392
            A+R +   +   IA A G  IV R  EL    +G  AG+   K  G   E   +I  C + KA TV +RG +K ++ E +R++ DA+ VARN+I+N  +V GGGA E+  S  +   +    G+E++
Sbjct:  317 AVRWVGGVELELIAIATGGRIVPRFQELTPEKLGK-AGVVREKSFGTTKERMLYIEHCANSKAVTVFIRGGNKMMIEETKRSIHDALCVARNLIRNKSIVYGGGAAEIACSLAVDAAADKYPGVEQY 442          
BLAST of CX287296 vs. ExPASy Swiss-Prot
Match: TCPA_BOVIN (T-complex protein 1 subunit alpha OS=Bos taurus GN=TCP1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.072e-13
Identity = 43/134 (32.09%), Postives = 78/134 (58.21%), Query Frame = 3
Query:    3 KAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVK-----KIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEK 389
            +AG  A+RR+ K D  RIAKA GA +++    L+  +    + L + +     +I D+    I + K   + +V+LRGA+  + +E+ER+L DA+ V + ++++  +VPGGGA E  +S  L+  ++S+   E+
Sbjct:  302 EAGAMAVRRVLKRDLKRIAKASGATVLSTLANLEGEETFEASMLGQAEEVVQERICDDELILIKNTKARTSASVILRGANDFMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAALSIYLENYATSMGSREQ 435          
BLAST of CX287296 vs. ExPASy Swiss-Prot
Match: TCPH_DICDI (T-complex protein 1 subunit eta OS=Dictyostelium discoideum GN=cct7 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.535e-13
Identity = 40/118 (33.90%), Postives = 63/118 (53.39%), Query Frame = 3
Query:   27 RLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEG 380
            R+   D  R+ +A GA I N    +    +GT   LFE  ++G + +     C   +  T++LRG  +  ++E ER+L D++ + R   K+  +V GGGA E+ VS  L+  S SIEG
Sbjct:  313 RVPDDDIRRVCRATGAAIQNTTSNIIPDVIGT-CDLFEEVQVGGQRYNLFTGCTMTQTATIILRGGGEQFIDEAERSLHDSIMIVRRARKHRSVVAGGGAIEMEVSKYLRDYSLSIEG 429          
BLAST of CX287296 vs. ExPASy Swiss-Prot
Match: TCPA_CAEEL (T-complex protein 1 subunit alpha OS=Caenorhabditis elegans GN=cct-1 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 3.535e-13
Identity = 43/134 (32.09%), Postives = 77/134 (57.46%), Query Frame = 3
Query:    3 KAGVSAIRRLRKTDNNRIAKACGAVIVN-----RPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEK 389
            ++G  A+RR +K+D  RIAKA GA +         DE  ++ +   A     ++I D+    I   K   A +++LRGA+  +L+E+ER++ D++ V R ++++ KLV GGGA E ++S  L+  + ++   E+
Sbjct:  305 ESGAMAVRRCKKSDLKRIAKATGATLTVSLATLEGDEAFDASLLGHADEIVQERISDDELILIKGPKSRTASSIILRGANDVMLDEMERSVHDSLCVVRRVLESKKLVAGGGAVETSLSLFLETYAQTLSSREQ 438          
BLAST of CX287296 vs. ExPASy Swiss-Prot
Match: TCPA_SCHPO (T-complex protein 1 subunit alpha OS=Schizosaccharomyces pombe GN=cct1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.617e-13
Identity = 41/134 (30.60%), Postives = 78/134 (58.21%), Query Frame = 3
Query:    3 KAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFA-----FIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEK 389
            +AG  A+RR +K D  RIAKA GA +++    L+  +    + L   +++  E F+      +   K   + +++LRG ++  L+E+ER++ D++SV +  +++ K+VPGGGA E  +S  L+  ++S+   E+
Sbjct:  307 EAGAMAVRRCKKEDLRRIAKASGATLLSSLSNLEGEETFESSYLGSAEEVVQEKFSDDECILVKGTKAYSSASIVLRGPNEYSLDEMERSMHDSLSVVKRTLESGKVVPGGGAVETALSIYLENFATSLGSREQ 440          
BLAST of CX287296 vs. ExPASy Swiss-Prot
Match: TCPA_RAT (T-complex protein 1 subunit alpha OS=Rattus norvegicus GN=Tcp1 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.617e-13
Identity = 43/134 (32.09%), Postives = 77/134 (57.46%), Query Frame = 3
Query:    3 KAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVK-----KIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEK 389
            +AG  A+RR+ K D  RIAKA GA I++    L+  +      L + +     +I D+    I + K   + +++LRGA+  + +E+ER+L DA+ V + ++++  +VPGGGA E  +S  L+  ++S+   E+
Sbjct:  302 EAGAMAVRRVLKRDLKRIAKASGASILSTLANLEGEETFEATMLGQAEEVVQERICDDELILIKNTKARTSASIILRGANDFMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAALSIYLENYATSMGSREQ 435          
BLAST of CX287296 vs. ExPASy Swiss-Prot
Match: TCPA_CRIGR (T-complex protein 1 subunit alpha OS=Cricetulus griseus GN=TCP1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.617e-13
Identity = 43/134 (32.09%), Postives = 77/134 (57.46%), Query Frame = 3
Query:    3 KAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVK-----KIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEK 389
            +AG  A+RR+ K D  RIAKA GA I++    L+  +      L + +     +I D+    I + K   + +++LRGA+  + +E+ER+L DA+ V + ++++  +VPGGGA E  +S  L+  ++S+   E+
Sbjct:  302 EAGAMAVRRVLKRDLKRIAKASGASILSTLANLEGEETFEATMLGQAEEVVQERICDDELILIKNTKARTSASIILRGANDFMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAALSIYLENYATSMGSREQ 435          
The following BLAST results are available for this feature:
BLAST of CX287296 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
TCPA_HUMAN9.303e-1432.84T-complex protein 1 subunit alpha OS=Homo sapiens ... [more]
THSB_HALSA1.587e-1330.83Thermosome subunit beta OS=Halobacterium salinariu... [more]
TCPZ_CAEEL1.587e-1329.92T-complex protein 1 subunit zeta OS=Caenorhabditis... [more]
TCPE_ARATH2.072e-1335.43T-complex protein 1 subunit epsilon OS=Arabidopsis... [more]
TCPA_BOVIN2.072e-1332.09T-complex protein 1 subunit alpha OS=Bos taurus GN... [more]
TCPH_DICDI3.535e-1333.90T-complex protein 1 subunit eta OS=Dictyostelium d... [more]
TCPA_CAEEL3.535e-1332.09T-complex protein 1 subunit alpha OS=Caenorhabditi... [more]
TCPA_SCHPO4.617e-1330.60T-complex protein 1 subunit alpha OS=Schizosacchar... [more]
TCPA_RAT4.617e-1332.09T-complex protein 1 subunit alpha OS=Rattus norveg... [more]
TCPA_CRIGR4.617e-1332.09T-complex protein 1 subunit alpha OS=Cricetulus gr... [more]

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Properties
Property NameValue
Genbank descriptionC01008A02SK Veg1 Citrus clementina cDNA clone C01008A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287296 ID=CX287296; Name=CX287296; organism=Citrus clementina; type=EST; length=402bp
GCAAGGCTGGCGTTAGTGCAATTAGGAGGCTAAGGAAGACAGACAATAAT
AGAATTGCCAAAGCATGTGGTGCTGTTATTGTGAACAGACCAGATGAATT
GCAGGAATCTGATGTTGGTACTGGGGCTGGGCTGTTTGAGGTTAAGAAAA
TTGGTGATGAATTCTTTGCTTTCATTGTTGATTGCAAAGATCCAAAAGCT
TGTACTGTACTCTTAAGAGGTGCTAGTAAGGATCTCCTGAATGAAGTGGA
AAGAAATTTGCAGGATGCAATGTCTGTGGCAAGAAACATAATCAAGAATC
CAAAACTAGTACCTGGTGGAGGGGCTACAGAATTAACAGTATCTGCCACT
CTAAAACAAAAGAGTTCCTCAATCGAAGGCATCGAAAAGTGGCCTTATGA
AG
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