CX287296
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX287296 vs. ExPASy Swiss-Prot
Match: TCPA_HUMAN (T-complex protein 1 subunit alpha OS=Homo sapiens GN=TCP1 PE=1 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 9.303e-14 Identity = 44/134 (32.84%), Postives = 78/134 (58.21%), Query Frame = 3 Query: 3 KAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVK-----KIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEK 389 +AG A+RR+ K D RIAKA GA I++ L+ + A L + + +I D+ I + K + +++LRGA+ + +E+ER+L DA+ V + ++++ +VPGGGA E +S L+ ++S+ E+ Sbjct: 302 EAGAMAVRRVLKRDLKRIAKASGATILSTLANLEGEETFEAAMLGQAEEVVQERICDDELILIKNTKARTSASIILRGANDFMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAALSIYLENYATSMGSREQ 435
BLAST of CX287296 vs. ExPASy Swiss-Prot
Match: THSB_HALSA (Thermosome subunit beta OS=Halobacterium salinarium GN=thsB PE=3 SV=2) HSP 1 Score: 74.7146 bits (182), Expect = 1.587e-13 Identity = 41/133 (30.83%), Postives = 74/133 (55.64%), Query Frame = 3 Query: 3 KAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYE 401 K G+ A+RR +K+D + A +V D E+DV G+ + DE F + + T+LLRG++ +++E+ER + DA+ V+ + + +++PGGGATE+ V++ L+ + S+ G E+ E Sbjct: 311 KEGILAVRRTKKSDIEFLTNVLDASVVTDLDAASEADVVAGS---VTRDSDDELFYVEGESEQAHGVTLLLRGSTDHVVDELERGVSDALDVSAQTLSDGRVLPGGGATEVEVASRLRDFADSVSGREQLAVE 440
BLAST of CX287296 vs. ExPASy Swiss-Prot
Match: TCPZ_CAEEL (T-complex protein 1 subunit zeta OS=Caenorhabditis elegans GN=cct-6 PE=1 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 1.587e-13 Identity = 38/127 (29.92%), Postives = 70/127 (55.12%), Query Frame = 3 Query: 9 GVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEK 389 G+ A+RR ++ + R+ A G VN D+L D+G AGL +G+E + FI +C+ PK+ T+L++G +K + +++ + D + N I + ++PG A E+ LK+ +++G K Sbjct: 313 GILALRRAKRRNMERLQLAVGGEAVNSVDDLTPEDLGW-AGLVYEHSLGEEKYTFIEECRAPKSVTLLIKGPNKHTITQIKDAIHDGLRAVFNTIVDKAVLPGAAAFEIAAYVMLKKDVENLKGRAK 438
BLAST of CX287296 vs. ExPASy Swiss-Prot
Match: TCPE_ARATH (T-complex protein 1 subunit epsilon OS=Arabidopsis thaliana GN=At1g24510 PE=2 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 2.072e-13 Identity = 45/127 (35.43%), Postives = 69/127 (54.33%), Query Frame = 3 Query: 18 AIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGD--EFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKW 392 A+R + + IA A G IV R EL +G AG+ K G E +I C + KA TV +RG +K ++ E +R++ DA+ VARN+I+N +V GGGA E+ S + + G+E++ Sbjct: 317 AVRWVGGVELELIAIATGGRIVPRFQELTPEKLGK-AGVVREKSFGTTKERMLYIEHCANSKAVTVFIRGGNKMMIEETKRSIHDALCVARNLIRNKSIVYGGGAAEIACSLAVDAAADKYPGVEQY 442
BLAST of CX287296 vs. ExPASy Swiss-Prot
Match: TCPA_BOVIN (T-complex protein 1 subunit alpha OS=Bos taurus GN=TCP1 PE=2 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 2.072e-13 Identity = 43/134 (32.09%), Postives = 78/134 (58.21%), Query Frame = 3 Query: 3 KAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVK-----KIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEK 389 +AG A+RR+ K D RIAKA GA +++ L+ + + L + + +I D+ I + K + +V+LRGA+ + +E+ER+L DA+ V + ++++ +VPGGGA E +S L+ ++S+ E+ Sbjct: 302 EAGAMAVRRVLKRDLKRIAKASGATVLSTLANLEGEETFEASMLGQAEEVVQERICDDELILIKNTKARTSASVILRGANDFMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAALSIYLENYATSMGSREQ 435
BLAST of CX287296 vs. ExPASy Swiss-Prot
Match: TCPH_DICDI (T-complex protein 1 subunit eta OS=Dictyostelium discoideum GN=cct7 PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 3.535e-13 Identity = 40/118 (33.90%), Postives = 63/118 (53.39%), Query Frame = 3 Query: 27 RLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEG 380 R+ D R+ +A GA I N + +GT LFE ++G + + C + T++LRG + ++E ER+L D++ + R K+ +V GGGA E+ VS L+ S SIEG Sbjct: 313 RVPDDDIRRVCRATGAAIQNTTSNIIPDVIGT-CDLFEEVQVGGQRYNLFTGCTMTQTATIILRGGGEQFIDEAERSLHDSIMIVRRARKHRSVVAGGGAIEMEVSKYLRDYSLSIEG 429
BLAST of CX287296 vs. ExPASy Swiss-Prot
Match: TCPA_CAEEL (T-complex protein 1 subunit alpha OS=Caenorhabditis elegans GN=cct-1 PE=2 SV=2) HSP 1 Score: 73.559 bits (179), Expect = 3.535e-13 Identity = 43/134 (32.09%), Postives = 77/134 (57.46%), Query Frame = 3 Query: 3 KAGVSAIRRLRKTDNNRIAKACGAVIVN-----RPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEK 389 ++G A+RR +K+D RIAKA GA + DE ++ + A ++I D+ I K A +++LRGA+ +L+E+ER++ D++ V R ++++ KLV GGGA E ++S L+ + ++ E+ Sbjct: 305 ESGAMAVRRCKKSDLKRIAKATGATLTVSLATLEGDEAFDASLLGHADEIVQERISDDELILIKGPKSRTASSIILRGANDVMLDEMERSVHDSLCVVRRVLESKKLVAGGGAVETSLSLFLETYAQTLSSREQ 438
BLAST of CX287296 vs. ExPASy Swiss-Prot
Match: TCPA_SCHPO (T-complex protein 1 subunit alpha OS=Schizosaccharomyces pombe GN=cct1 PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 4.617e-13 Identity = 41/134 (30.60%), Postives = 78/134 (58.21%), Query Frame = 3 Query: 3 KAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFA-----FIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEK 389 +AG A+RR +K D RIAKA GA +++ L+ + + L +++ E F+ + K + +++LRG ++ L+E+ER++ D++SV + +++ K+VPGGGA E +S L+ ++S+ E+ Sbjct: 307 EAGAMAVRRCKKEDLRRIAKASGATLLSSLSNLEGEETFESSYLGSAEEVVQEKFSDDECILVKGTKAYSSASIVLRGPNEYSLDEMERSMHDSLSVVKRTLESGKVVPGGGAVETALSIYLENFATSLGSREQ 440
BLAST of CX287296 vs. ExPASy Swiss-Prot
Match: TCPA_RAT (T-complex protein 1 subunit alpha OS=Rattus norvegicus GN=Tcp1 PE=1 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 4.617e-13 Identity = 43/134 (32.09%), Postives = 77/134 (57.46%), Query Frame = 3 Query: 3 KAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVK-----KIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEK 389 +AG A+RR+ K D RIAKA GA I++ L+ + L + + +I D+ I + K + +++LRGA+ + +E+ER+L DA+ V + ++++ +VPGGGA E +S L+ ++S+ E+ Sbjct: 302 EAGAMAVRRVLKRDLKRIAKASGASILSTLANLEGEETFEATMLGQAEEVVQERICDDELILIKNTKARTSASIILRGANDFMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAALSIYLENYATSMGSREQ 435
BLAST of CX287296 vs. ExPASy Swiss-Prot
Match: TCPA_CRIGR (T-complex protein 1 subunit alpha OS=Cricetulus griseus GN=TCP1 PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 4.617e-13 Identity = 43/134 (32.09%), Postives = 77/134 (57.46%), Query Frame = 3 Query: 3 KAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVK-----KIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEK 389 +AG A+RR+ K D RIAKA GA I++ L+ + L + + +I D+ I + K + +++LRGA+ + +E+ER+L DA+ V + ++++ +VPGGGA E +S L+ ++S+ E+ Sbjct: 302 EAGAMAVRRVLKRDLKRIAKASGASILSTLANLEGEETFEATMLGQAEEVVQERICDDELILIKNTKARTSASIILRGANDFMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAALSIYLENYATSMGSREQ 435 The following BLAST results are available for this feature:
BLAST of CX287296 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 108
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Sequences
The
following sequences are available for this feature:
EST sequence >CX287296 ID=CX287296; Name=CX287296; organism=Citrus clementina; type=EST; length=402bpback to top |