CX287296

Overview
NameCX287296
Unique NameCX287296
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length402
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1356 contig Ccv1_Contig1356:6..407. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287296 vs. ExPASy Swiss-Prot
Match: TCPA_TETPY (T-complex protein 1 subunit alpha OS=Tetrahymena pyriformis PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.754e-12
Identity = 42/124 (33.87%), Postives = 74/124 (59.68%), Query Frame = 3
Query:    3 KAGVSAIRRLRKTDNNRIAKACGAVIVN-----RPDELQESD-VGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLK 356
            +AGV  +RR+ K D  R+AKA G  IV        DE+ E+  +G  A ++E + +GD    F    K     ++++RGA++ +++EV+R+L D++ V +  +++  +VPGGGA E+ +S  L+
Sbjct:  302 EAGVMGLRRVDKHDLRRLAKATGGTIVTTLATPEGDEVFEASYLGECAEVYE-EAVGDNDCIFFKGTKRANCASIIIRGANEFMVDEVDRSLHDSLCVVKRTLESGYVVPGGGAVEIALSIKLE 424          
BLAST of CX287296 vs. ExPASy Swiss-Prot
Match: TCPH_TETTH (T-complex protein 1 subunit eta (Fragment) OS=Tetrahymena thermophila PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.291e-12
Identity = 37/100 (37.00%), Postives = 57/100 (57.00%), Query Frame = 3
Query:   27 RLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGA 326
            R+   D  R+ K+ GA++    + L E  +GT    FE  +IG E +    DC   K+ T++LRG ++  + E ER+L DA+ + R  +K  K+VPGGGA
Sbjct:  255 RVDAEDMKRVQKSTGAIVQTTVNGLTEDVLGT-CNQFEEVQIGAERYNLFKDCPHSKSATIILRGGAEQFIAEAERSLNDAIMIVRRCMKANKIVPGGGA 353          
BLAST of CX287296 vs. ExPASy Swiss-Prot
Match: TCPE2_AVESA (T-complex protein 1 subunit epsilon OS=Avena sativa PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.291e-12
Identity = 43/127 (33.86%), Postives = 70/127 (55.12%), Query Frame = 3
Query:   18 AIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGD--EFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKW 392
            A+R +   +   IA A G  IV R  EL    +G  AGL   K  G   +   +I  C + KA T+ +RG +K ++ E +R++ DA+ VARN+I N  +V GGG+ E++ S  ++  +    G+E++
Sbjct:  317 AVRWVGGVELELIAIATGGRIVPRFQELSTEKLGK-AGLVREKSFGTTKDRMLYIEKCANSKAVTIFIRGGNKMMIEETKRSIHDALCVARNLIINNSIVYGGGSAEISCSIAVEAAADRHPGVEQY 442          
BLAST of CX287296 vs. ExPASy Swiss-Prot
Match: TCPE1_AVESA (T-complex protein 1 subunit epsilon OS=Avena sativa PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.291e-12
Identity = 43/127 (33.86%), Postives = 70/127 (55.12%), Query Frame = 3
Query:   18 AIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGD--EFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKW 392
            A+R +   +   IA A G  IV R  EL    +G  AGL   K  G   +   +I  C + KA T+ +RG +K ++ E +R++ DA+ VARN+I N  +V GGG+ E++ S  ++  +    G+E++
Sbjct:  317 AVRWVGGVELELIAIATGGRIVPRFQELSTEKLGK-AGLVREKSFGTTKDRMLYIEKCANSKAVTIFIRGGNKMMIEETKRSIHDALCVARNLIINNSIVYGGGSAEISCSIAVEAAADRHPGVEQY 442          
BLAST of CX287296 vs. ExPASy Swiss-Prot
Match: TCPA_PALPA (T-complex protein 1 subunit alpha OS=Paleosuchus palpebrosus GN=TCP1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.291e-12
Identity = 40/133 (30.08%), Postives = 76/133 (57.14%), Query Frame = 3
Query:    6 AGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVK-----KIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEK 389
            AG  A+RR+ K D  RIAKA GA + +    L+  +    + L + +     ++ D+    I + K   + +++LRGA+  + +E+ER++ DA+ V + ++++  +VPGGGA E  +S  L+  ++S+   E+
Sbjct:  306 AGAMAVRRVLKKDLKRIAKASGATVCSTLANLEGEESFEASMLGQAEEVVQERVCDDELILIKNTKARTSASIILRGANDFMCDEMERSIHDALCVVKRVLESKSVVPGGGAVEAALSIYLENYATSMGSREQ 438          
BLAST of CX287296 vs. ExPASy Swiss-Prot
Match: TCPH_ENCCU (T-complex protein 1 subunit eta OS=Encephalitozoon cuniculi GN=CCT7 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.993e-12
Identity = 40/121 (33.06%), Postives = 70/121 (57.85%), Query Frame = 3
Query:    3 KAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKS 365
            K G+    R+ K D  R+  +CG  I+   D L E  +G  A LFE +++G   + +  +     ACT++LRG  +++L E+ R++ DA+ V R  ++  K+V GGG+ E+ +S  +++KS
Sbjct:  294 KHGIFCAGRVSKEDLGRVVGSCGGSILGATDYL-EGSLGACA-LFEERQLGKFRYNYF-EGGGTSACTMILRGPGQEVLEEIGRSVHDAVCVVRTALRTRKVVTGGGSVEMELSRIIREKS 411          
BLAST of CX287296 vs. ExPASy Swiss-Prot
Match: TCPA_ENCCU (T-complex protein 1 subunit alpha OS=Encephalitozoon cuniculi GN=TCP1 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.993e-12
Identity = 45/131 (34.35%), Postives = 76/131 (58.02%), Query Frame = 3
Query:    3 KAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGL---FEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIE 386
            +A V  IRR +K D   IAKA G  +V+   ++  +D  +  G    FEV +IG+E    I   K  K  +++LRGA+  LL+E++R++ DA+ V +  +++  +VPGGGA E  +S  L++ + ++   E
Sbjct:  307 EADVVGIRRCKKEDLLVIAKATGTSLVSSIADISGADSISSLGFADKFEVVQIGEEECVLINGLKK-KMASIILRGANCQLLDEMQRSVHDAVCVLKRTLESNSVVPGGGAVECALSLMLEKFAFTVNSKE 436          
BLAST of CX287296 vs. ExPASy Swiss-Prot
Match: TCPA1_MOUSE (T-complex protein 1 subunit alpha A OS=Mus musculus GN=Tcp1 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 2.993e-12
Identity = 44/140 (31.43%), Postives = 76/140 (54.29%), Query Frame = 3
Query:    3 KAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIG-----------DEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEK 389
            +AG  A+RR+ K D   +AKA GA I++    L+      G   FEV  +G           D+    I + K   + +++LRGA+  + +E+ER+L DA+ V + ++++  +VPGGGA E  +S  L+  ++S+   E+
Sbjct:  302 EAGAMAVRRVLKRDLKCVAKASGATILSTLANLE------GEETFEVTMLGQAEEVVQERICDDELILIKNTKARTSASIILRGANDFMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAALSIYLENYATSMGSREQ 435          
BLAST of CX287296 vs. ExPASy Swiss-Prot
Match: TCPE_CAEEL (T-complex protein 1 subunit epsilon OS=Caenorhabditis elegans GN=cct-5 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.908e-12
Identity = 42/129 (32.56%), Postives = 74/129 (57.36%), Query Frame = 3
Query:   18 AIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIG--DEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPY 398
            A+R +   +   +A A  A IV R  EL +  +GT AGL      G   +    I  C + KA T+ +RG +K +++E +R L DA+ V RN++++ ++V GGG+ EL  +  + +++  I+GIE++ +
Sbjct:  320 AVRWVGGPEIELLAIATNARIVPRFSELSKEKLGT-AGLVREITFGAAKDRMLSIEQCPNNKAVTIFVRGGNKMIIDEAKRALHDALCVIRNLVRDSRIVYGGGSAELAAAIQVAKEADRIDGIEQYAF 447          
BLAST of CX287296 vs. ExPASy Swiss-Prot
Match: TCPA_MONDO (T-complex protein 1 subunit alpha OS=Monodelphis domestica GN=TCP1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.105e-12
Identity = 41/129 (31.78%), Postives = 75/129 (58.14%), Query Frame = 3
Query:   18 AIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVK-----KIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEK 389
            A+RR+ K D  RIAKA GA I++    L+  +    + L + +     +I D+    I + K   + +++LRGA+  + +E+ER+L DA+ V + ++++  +VPGGGA E  +S  L+  ++S+   E+
Sbjct:  307 AVRRVLKRDLKRIAKASGATILSTLASLEGEESFEASMLGQAEEVVQERICDDELILIKNTKARTSASIILRGANDFMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAALSIYLENYATSMGSREQ 435          
The following BLAST results are available for this feature:
BLAST of CX287296 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
TCPA_TETPY1.754e-1233.87T-complex protein 1 subunit alpha OS=Tetrahymena p... [more]
TCPH_TETTH2.291e-1237.00T-complex protein 1 subunit eta (Fragment) OS=Tetr... [more]
TCPE2_AVESA2.291e-1233.86T-complex protein 1 subunit epsilon OS=Avena sativ... [more]
TCPE1_AVESA2.291e-1233.86T-complex protein 1 subunit epsilon OS=Avena sativ... [more]
TCPA_PALPA2.291e-1230.08T-complex protein 1 subunit alpha OS=Paleosuchus p... [more]
TCPH_ENCCU2.993e-1233.06T-complex protein 1 subunit eta OS=Encephalitozoon... [more]
TCPA_ENCCU2.993e-1234.35T-complex protein 1 subunit alpha OS=Encephalitozo... [more]
TCPA1_MOUSE2.993e-1231.43T-complex protein 1 subunit alpha A OS=Mus musculu... [more]
TCPE_CAEEL3.908e-1232.56T-complex protein 1 subunit epsilon OS=Caenorhabdi... [more]
TCPA_MONDO5.105e-1231.78T-complex protein 1 subunit alpha OS=Monodelphis d... [more]

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Properties
Property NameValue
Genbank descriptionC01008A02SK Veg1 Citrus clementina cDNA clone C01008A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287296 ID=CX287296; Name=CX287296; organism=Citrus clementina; type=EST; length=402bp
GCAAGGCTGGCGTTAGTGCAATTAGGAGGCTAAGGAAGACAGACAATAAT
AGAATTGCCAAAGCATGTGGTGCTGTTATTGTGAACAGACCAGATGAATT
GCAGGAATCTGATGTTGGTACTGGGGCTGGGCTGTTTGAGGTTAAGAAAA
TTGGTGATGAATTCTTTGCTTTCATTGTTGATTGCAAAGATCCAAAAGCT
TGTACTGTACTCTTAAGAGGTGCTAGTAAGGATCTCCTGAATGAAGTGGA
AAGAAATTTGCAGGATGCAATGTCTGTGGCAAGAAACATAATCAAGAATC
CAAAACTAGTACCTGGTGGAGGGGCTACAGAATTAACAGTATCTGCCACT
CTAAAACAAAAGAGTTCCTCAATCGAAGGCATCGAAAAGTGGCCTTATGA
AG
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