CX287296

Overview
NameCX287296
Unique NameCX287296
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length402
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1356 contig Ccv1_Contig1356:6..407. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287296 vs. ExPASy Swiss-Prot
Match: TCPA_ARATH (T-complex protein 1 subunit alpha OS=Arabidopsis thaliana GN=CCT1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.105e-12
Identity = 41/134 (30.60%), Postives = 74/134 (55.22%), Query Frame = 3
Query:    3 KAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEV-----KKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEK 389
            +AG  A+RR+RK D   +AKA GA +V    +++  +    A L        ++I D+    I   K   A +++LRGA+  +L+E+ER L DA+ + +  +++  +V GGGA E  +S  L+  ++++   E+
Sbjct:  305 EAGAIAVRRVRKEDMRHVAKATGATLVTTFADMEGEETFDPAHLGSADEVVEERIADDDVILIKGTKTSSAVSLILRGANDYMLDEMERALHDALCIVKRTLESNTVVAGGGAVESALSVYLEHLATTLGSREQ 438          
BLAST of CX287296 vs. ExPASy Swiss-Prot
Match: THS2_HALVO (Thermosome subunit 2 OS=Halobacterium volcanii GN=cct2 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.667e-12
Identity = 41/140 (29.29%), Postives = 77/140 (55.00%), Query Frame = 3
Query:    3 KAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGA-------GLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYE 401
            K G+ A+RR +K+D   +    GA +V+  D ++ + +G  +        LF V+ IGD          D    T+LLRG++  +++E+ER +QDA+ V  + + + +++ GGGA E+ +++ L+  + S+ G E+   E
Sbjct:  310 KQGILAVRRTKKSDIRFLKNITGAAVVSDLDSIEAAVLGRASVRRDEAGELFYVEGIGD----------DVHGVTLLLRGSTDHVVDELERGVQDALDVVASTVADGRVLAGGGAIEVELASRLRNYADSVSGREQLAVE 439          
BLAST of CX287296 vs. ExPASy Swiss-Prot
Match: TCPA2_MOUSE (T-complex protein 1 subunit alpha B OS=Mus musculus GN=Tcp1 PE=1 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 6.667e-12
Identity = 44/140 (31.43%), Postives = 75/140 (53.57%), Query Frame = 3
Query:    3 KAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIG-----------DEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEK 389
            +AG  A+RR+ K D   +AKA GA I++    L+      G   FEV  +G           D+    I + K   + +++LRGA+  + +E+ER+L DA+ V + +++   +VPGGGA E  +S  L+  ++S+   E+
Sbjct:  302 EAGAMAVRRVLKRDLKHVAKASGASILSTLANLE------GEETFEVTMLGQAEEVVQERICDDELILIKNTKARTSASIILRGANDFMCDEMERSLHDALCVVKRVLELKSVVPGGGAVEAALSIYLENYATSMGSREQ 435          
BLAST of CX287296 vs. ExPASy Swiss-Prot
Match: TCPB_YEAST (T-complex protein 1 subunit beta OS=Saccharomyces cerevisiae GN=CCT2 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.707e-12
Identity = 39/124 (31.45%), Postives = 66/124 (53.23%), Query Frame = 3
Query:    9 GVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEG 380
            G+++I         R+A   G  +V+  DE  +  +G    + E   +G++ F     CK  +ACT++LRGA+   L+E ER+L DA+SV     K  + V GGG  E+ +S  +  ++ +I+G
Sbjct:  302 GINSIEHADFEGVERLALVTGGEVVSTFDEPSKCKLGE-CDVIEEIMLGEQPFLKFSGCKAGEACTIVLRGATDQTLDEAERSLHDALSVLSQTTKETRTVLGGGCAEMVMSKAVDTEAQNIDG 424          
BLAST of CX287296 vs. ExPASy Swiss-Prot
Match: TCPE_MOUSE (T-complex protein 1 subunit epsilon OS=Mus musculus GN=Cct5 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.485e-11
Identity = 41/130 (31.54%), Postives = 73/130 (56.15%), Query Frame = 3
Query:    9 GVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGD--EFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKW 392
            G+ A+R +   +   IA A G  IV R  EL    +G  AG+ +    G   +    I  CK+ +A T+ +RG +K ++ E +R+L DA+ V RN+I++ ++V GGGA E++ +  + Q++     +E++
Sbjct:  318 GLPAVRWVGGPEIELIAIATGGRIVPRFSELTSEKLGF-AGVVQEISFGTTKDKMLVIEKCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKCPTLEQY 446          
BLAST of CX287296 vs. ExPASy Swiss-Prot
Match: TCPD_CANGA (T-complex protein 1 subunit delta OS=Candida glabrata GN=CCT4 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.485e-11
Identity = 37/135 (27.41%), Postives = 75/135 (55.56%), Query Frame = 3
Query:    3 KAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAF--IVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYE 401
            K G+  I+ + + +   ++K+ G   ++  +   E  +G+   + E+   G +   F  +         +V++RGA+  +L+E ER+L DA+ V R ++K   L+ GGGA E+ +S  L+++S S+EG+E + ++
Sbjct:  308 KLGIMVIKDIEREEIEFLSKSLGCKPISDVELFTEDRLGSADLVEEIDSDGTKIVKFSGVKGVNAKPTVSVIIRGANSMILDETERSLHDALCVIRCLVKERGLIAGGGAPEIEISRRLERESRSMEGVEAYIWQ 442          
BLAST of CX287296 vs. ExPASy Swiss-Prot
Match: TCPA_DICDI (T-complex protein 1 subunit alpha OS=Dictyostelium discoideum GN=tcp1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.485e-11
Identity = 38/123 (30.89%), Postives = 71/123 (57.72%), Query Frame = 3
Query:    3 KAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESD------VGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATL 353
            +AG  A+RR +K D  RIAK+CG  ++     L+  +      +G    + + +   DE    IV   + K+ +++LRGA++ +L+E+ER++ D++ + +  +++  +VPGGGA E  +S  L
Sbjct:  303 EAGCMAVRRCKKEDLKRIAKSCGGTVLITLANLEGEESFDTTALGIADEVVQDRLADDELI--IVKNSNKKSASIILRGANELMLDEMERSIHDSLCIVKRTLESGTIVPGGGAVESALSIYL 423          
BLAST of CX287296 vs. ExPASy Swiss-Prot
Match: TCPE_RAT (T-complex protein 1 subunit epsilon OS=Rattus norvegicus GN=Cct5 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.940e-11
Identity = 39/129 (30.23%), Postives = 71/129 (55.04%), Query Frame = 3
Query:    9 GVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVK-KIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKW 392
            G+ A+R +   +   IA A G  IV R  EL    +G    + E+      +    I  CK+ +A T+ +RG +K ++ E +R+L DA+ V RN+I++ ++V GGGA E++ +  + Q++     +E++
Sbjct:  318 GLPAVRWVGGPEIELIAIATGGRIVPRFSELTSEKLGFAGVVREISFGTTKDKMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKCPTLEQY 446          
BLAST of CX287296 vs. ExPASy Swiss-Prot
Match: TCPE_DICDI (T-complex protein 1 subunit epsilon OS=Dictyostelium discoideum GN=cct5 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.940e-11
Identity = 39/129 (30.23%), Postives = 75/129 (58.14%), Query Frame = 3
Query:   18 AIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIG----DEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKW 392
            A+R +   D  +IA A G  IV R +++    +G  AGL  V+++G     + +  I DC +  A T+ +RG +K ++ E +R++ DA+ V RN+I++ +++ GGG++E++    +   +  I  IE++
Sbjct:  317 AVRWVGGLDLEKIAMATGGRIVARFEDVSADKLGR-AGL--VREVGFGTTQDRYLSIEDCPNTNAVTIFVRGGNKMIVEEAKRSIHDALCVTRNLIRDNRVIYGGGSSEISCGLKISAMADDIASIEQY 442          
BLAST of CX287296 vs. ExPASy Swiss-Prot
Match: TCPE_YEAST (T-complex protein 1 subunit epsilon OS=Saccharomyces cerevisiae GN=CCT5 PE=1 SV=3)

HSP 1 Score: 67.0106 bits (162), Expect = 3.309e-11
Identity = 38/129 (29.46%), Postives = 75/129 (58.14%), Query Frame = 3
Query:   18 AIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGD--EFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPY 398
            A+R +   +   IA +    IV R  +L +  +GT + ++E ++ G   +    I   K+ K  T  +RG++K +++E ER L D++ V RN++K+ ++V GGGA E+T+S  + +++    GI+++ +
Sbjct:  342 AVRWVGGQELEHIAISTNGRIVPRFQDLSKDKLGTCSRIYE-QEFGTTKDRMLIIEQSKETKTVTCFVRGSNKMIVDEAERALHDSLCVVRNLVKDSRVVYGGGAAEVTMSLAVSEEADKQRGIDQYAF 469          
The following BLAST results are available for this feature:
BLAST of CX287296 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
TCPA_ARATH5.105e-1230.60T-complex protein 1 subunit alpha OS=Arabidopsis t... [more]
THS2_HALVO6.667e-1229.29Thermosome subunit 2 OS=Halobacterium volcanii GN=... [more]
TCPA2_MOUSE6.667e-1231.43T-complex protein 1 subunit alpha B OS=Mus musculu... [more]
TCPB_YEAST8.707e-1231.45T-complex protein 1 subunit beta OS=Saccharomyces ... [more]
TCPE_MOUSE1.485e-1131.54T-complex protein 1 subunit epsilon OS=Mus musculu... [more]
TCPD_CANGA1.485e-1127.41T-complex protein 1 subunit delta OS=Candida glabr... [more]
TCPA_DICDI1.485e-1130.89T-complex protein 1 subunit alpha OS=Dictyostelium... [more]
TCPE_RAT1.940e-1130.23T-complex protein 1 subunit epsilon OS=Rattus norv... [more]
TCPE_DICDI1.940e-1130.23T-complex protein 1 subunit epsilon OS=Dictyosteli... [more]
TCPE_YEAST3.309e-1129.46T-complex protein 1 subunit epsilon OS=Saccharomyc... [more]

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Properties
Property NameValue
Genbank descriptionC01008A02SK Veg1 Citrus clementina cDNA clone C01008A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287296 ID=CX287296; Name=CX287296; organism=Citrus clementina; type=EST; length=402bp
GCAAGGCTGGCGTTAGTGCAATTAGGAGGCTAAGGAAGACAGACAATAAT
AGAATTGCCAAAGCATGTGGTGCTGTTATTGTGAACAGACCAGATGAATT
GCAGGAATCTGATGTTGGTACTGGGGCTGGGCTGTTTGAGGTTAAGAAAA
TTGGTGATGAATTCTTTGCTTTCATTGTTGATTGCAAAGATCCAAAAGCT
TGTACTGTACTCTTAAGAGGTGCTAGTAAGGATCTCCTGAATGAAGTGGA
AAGAAATTTGCAGGATGCAATGTCTGTGGCAAGAAACATAATCAAGAATC
CAAAACTAGTACCTGGTGGAGGGGCTACAGAATTAACAGTATCTGCCACT
CTAAAACAAAAGAGTTCCTCAATCGAAGGCATCGAAAAGTGGCCTTATGA
AG
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