CX287318

Overview
NameCX287318
Unique NameCX287318
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length440
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287318 vs. ExPASy Swiss-Prot
Match: MDH_AZOSE (Malate dehydrogenase OS=Azoarcus sp. (strain EbN1) GN=mdh PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 7.105e-26
Identity = 62/142 (43.66%), Postives = 84/142 (59.15%), Query Frame = 2
Query:   23 ELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSI---PAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPD 439
            EL D AFPL+ G+VAT D   A    +  ++VG  PR  GMER D+++ N +I+  Q  A+ ++A  N KVLVV NP NTNA I    A  +      N   + RLDHNRAL Q++ K    VS +K +++WGNHS + Y D
Sbjct:   57 ELEDCAFPLLAGMVATDDPNVAFKDADYCLLVGARPRGPGMERADLLTANGAIFTVQGKAIAENANENVKVLVVGNPCNTNAYIAGAAARKVGRTNPNNYHGMLRLDHNRALSQLAAKTGRPVSSLKKMVVWGNHSPTMYAD 198          
BLAST of CX287318 vs. ExPASy Swiss-Prot
Match: MDH_CHLMU (Malate dehydrogenase OS=Chlamydia muridarum GN=mdh PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.700e-25
Identity = 56/139 (40.29%), Postives = 77/139 (55.40%), Query Frame = 2
Query:   23 ELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPD 439
            EL D AFPL++ V  TT   +A   ++ A ++G  PR  GMER+D++ KN  I+  Q   L   A    K+ VV NP NTN  I    AP +  KN   + RLD NR    ++ +  V +S V  V++WGNHS+ Q PD
Sbjct:   57 ELDDGAFPLLQRVQVTTSLHDAFDDIDAAFLIGSVPRGPGMERRDLLKKNGEIFATQGKVLNTAAKREAKIFVVGNPVNTNCWIAMNHAPRLLRKNFHAMLRLDQNRMHSMLAHRAEVPLSAVSQVVVWGNHSAKQVPD 195          
BLAST of CX287318 vs. ExPASy Swiss-Prot
Match: MDH_CHLPN (Malate dehydrogenase OS=Chlamydia pneumoniae GN=mdh PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.526e-25
Identity = 55/139 (39.57%), Postives = 80/139 (57.55%), Query Frame = 2
Query:   23 ELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPD 439
            EL D A+PL+  +  TT   +A  G++ A ++G  PR  GMER D++ +N  I+  Q +AL   A  + K+ VV NP NTN  I  + AP +  KN   + RLD NR    ++ +  V + +V  V+IWGNHS+ Q PD
Sbjct:   58 ELDDGAYPLLHRLRVTTSLNDAFDGIDAAFLIGAVPRGPGMERGDLLKQNGQIFSLQGAALNTAAKRDAKIFVVGNPVNTNCWIAMKHAPRLHRKNFHAMLRLDQNRMHSMLAHRAEVPLEEVSRVVIWGNHSAKQVPD 196          
BLAST of CX287318 vs. ExPASy Swiss-Prot
Match: MDH_CHLAB (Malate dehydrogenase OS=Chlamydophila abortus GN=mdh PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.605e-25
Identity = 54/139 (38.85%), Postives = 80/139 (57.55%), Query Frame = 2
Query:   23 ELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPD 439
            EL D A+PL++ +  TT   +A  G++ A ++G  PR  GMER D++ +N  I+  Q S L   A  + K+ VV NP NTN  I    AP +  +N   + RLD NR    ++ +  V + +V +V+IWGNHS+ Q PD
Sbjct:   60 ELDDGAYPLLQSLRVTTSLEDAFDGIDAAFLIGAAPRGPGMERSDLLKRNGEIFSLQGSVLNTSAKRDAKIFVVGNPVNTNCWIAMSQAPRLNRRNFHSMLRLDQNRMHTMLAHRAEVPLDEVSHVVIWGNHSAKQVPD 198          
BLAST of CX287318 vs. ExPASy Swiss-Prot
Match: MDH_MAGSM (Malate dehydrogenase OS=Magnetococcus sp. (strain MC-1) GN=mdh PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 4.310e-23
Identity = 59/139 (42.45%), Postives = 82/139 (58.99%), Query Frame = 2
Query:   23 ELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPD 439
            EL D AFP +  V A  +  +A  G+N  +MVG  PR  GMER D++  N  I+  Q  AL + AA + + +VV NP NTN +I    +  +P +  + + RLD NRA   ++ K   QV DV NV+IWGNHS++Q PD
Sbjct:   56 ELQDCAFPTLAKVEAFDNPEQAFDGINWCLMVGSRPRGPGMERSDLIKINGPIFVNQGKALNR-AAQDVRAVVVGNPCNTNCMIAAHNS-DVPHERFSAMMRLDQNRAKYLLASKAGAQVIDVTNVVIWGNHSNNQVPD 192          
BLAST of CX287318 vs. ExPASy Swiss-Prot
Match: MDH1B_BRAFL (Putative malate dehydrogenase 1B OS=Branchiostoma floridae GN=MDH1B PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 9.625e-15
Identity = 45/140 (32.14%), Postives = 74/140 (52.86%), Query Frame = 2
Query:   23 ELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVAN-PANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPD 439
            E+ D +FP +K +  TTD   A    +IA+++  F +    +    M   VS YK  A A+ Q A+ + +VLV    P N+   IL +  PSIP +NI  + ++   +A   ++++L V  + V +VI+WGN   + Y D
Sbjct:  182 EVFDLSFPFLKEISVTTDLPTAFQNAHIAIVLDDFDQGGKEDAIGDMETKVSFYKRVAEAINQTASKDIRVLVAGTGPLNSLVSILIDHTPSIPRQNIAAVAQVKERQAKSLLAKRLTVNSAGVCDVIVWGNVGGTTYTD 321          
The following BLAST results are available for this feature:
BLAST of CX287318 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 186
Match NameE-valueIdentityDescription
MDH_AZOSE7.105e-2643.66Malate dehydrogenase OS=Azoarcus sp. (strain EbN1)... [more]
MDH_CHLMU2.700e-2540.29Malate dehydrogenase OS=Chlamydia muridarum GN=mdh... [more]
MDH_CHLPN3.526e-2539.57Malate dehydrogenase OS=Chlamydia pneumoniae GN=md... [more]
MDH_CHLAB4.605e-2538.85Malate dehydrogenase OS=Chlamydophila abortus GN=m... [more]
MDH_MAGSM4.310e-2342.45Malate dehydrogenase OS=Magnetococcus sp. (strain ... [more]
MDH1B_BRAFL9.625e-1532.14Putative malate dehydrogenase 1B OS=Branchiostoma ... [more]

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Properties
Property NameValue
Genbank descriptionC01008C02SK Veg1 Citrus clementina cDNA clone C01008C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287318 ID=CX287318; Name=CX287318; organism=Citrus clementina; type=EST; length=440bp
CTCGTGCCGAATTCGGCACGAGGAGTTGGTTGATGCTGCATTCCCTCTTA
TTAAAGGTGTTGTTGCTACAACTGATGCTGTTGAGGCATGCACTGGGGTC
AATATTGCCGTTATGGTTGGTGGCTTTCCAAGAAAAGAAGGAATGGAGAG
AAAAGATGTGATGTCAAAGAACGTTTCAATCTACAAGGCTCAGGCTTCTG
CCCTGGAGCAGCACGCAGCTCCGAACTGCAAGGTTCTAGTTGTCGCTAAC
CCTGCAAACACCAATGCATTGATTCTGAAAGAATTTGCGCCATCAATCCC
TGCTAAGAACATTACATGCTTGACCAGATTGGATCATAACAGGGCATTGG
GACAAATATCTGAGAAACTGAATGTCCAAGTATCTGATGTTAAGAATGTG
ATTATTTGGGGAAATCATTCATCATCTCAGTACCCTGATG
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