CX287318

Overview
NameCX287318
Unique NameCX287318
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length440
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14313 contig Ccv1_Contig14313:241..680. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287318 vs. ExPASy Swiss-Prot
Match: MDH_STRGG (Malate dehydrogenase OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=mdh PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 4.744e-38
Identity = 73/139 (52.52%), Postives = 97/139 (69.78%), Query Frame = 2
Query:   23 ELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPD 439
            EL D AFPL++G+  T D      G N+A++VG  PR +GMER D+++ N  I+K Q  A+  HAA + KVLVV NPANTNALI +  AP +PA+  T +TRLDHNRA+ Q++ K    VSD+K + IWGNHS++QYPD
Sbjct:   57 ELDDCAFPLLRGIEITDDPNVGFAGANVALLVGARPRTKGMERGDLLAANGGIFKPQGKAINDHAADDIKVLVVGNPANTNALIAQAAAPDVPAERFTAMTRLDHNRAISQLAAKTGAAVSDIKKLTIWGNHSATQYPD 195          
BLAST of CX287318 vs. ExPASy Swiss-Prot
Match: MDH_STRCO (Malate dehydrogenase OS=Streptomyces coelicolor GN=mdh PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 8.091e-38
Identity = 74/139 (53.24%), Postives = 98/139 (70.50%), Query Frame = 2
Query:   23 ELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPD 439
            EL D AFPL++G+  T D   A  G N+A++VG  PR +GMER D++  N  I+K Q  A+  HAA + KVLVV NPANTNALI +  AP +PA+  T +TRLDHNRAL Q+++K    V+D+K + IWGNHS++QYPD
Sbjct:   57 ELDDCAFPLLQGIEITDDPNVAFDGANVALLVGARPRTKGMERGDLLEANGGIFKPQGKAINDHAADDIKVLVVGNPANTNALIAQAAAPDVPAERFTAMTRLDHNRALTQLAKKTGSTVADIKRLTIWGNHSATQYPD 195          
BLAST of CX287318 vs. ExPASy Swiss-Prot
Match: MDH_PSYWF (Malate dehydrogenase OS=Psychrobacter sp. (strain PRwf-1) GN=mdh PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 1.057e-37
Identity = 76/139 (54.68%), Postives = 98/139 (70.50%), Query Frame = 2
Query:   23 ELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPD 439
            EL D AFPL+ GVV T DA  A    + A++VG  PR  GMERKD++  N +I+ AQ  AL + A+ + KVLVV NPANTNALI +  AP +  +N T +TRLDHNR + Q++E+ N  V+DVK +IIWGNHSS+QYPD
Sbjct:   56 ELEDCAFPLLAGVVQTDDATVAFKDADYALLVGARPRGPGMERKDLLEANAAIFSAQGKALNEVASRDVKVLVVGNPANTNALIAQRNAPDLDPRNFTAMTRLDHNRGMAQLAEETNSTVNDVKKMIIWGNHSSTQYPD 194          
BLAST of CX287318 vs. ExPASy Swiss-Prot
Match: MDH_FRASC (Malate dehydrogenase OS=Frankia sp. (strain CcI3) GN=mdh PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 1.803e-37
Identity = 73/139 (52.52%), Postives = 99/139 (71.22%), Query Frame = 2
Query:   23 ELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPD 439
            EL D+AFPL+ GV    DA  A  G N+A++VG  PR +GMER D++S N  I+K Q  A+   AA + +VLVV NPANTNALI +  AP +PA+  T +TRLDHNRA+ Q+++KL V  +++K + IWGNHS++QYPD
Sbjct:   57 ELEDSAFPLLAGVDVFDDAKRAFEGTNVALLVGARPRTKGMERGDLLSANGGIFKPQGEAINSGAAEDIRVLVVGNPANTNALIAQTHAPDVPAERFTAMTRLDHNRAIAQLAKKLGVPSAEIKKITIWGNHSATQYPD 195          
BLAST of CX287318 vs. ExPASy Swiss-Prot
Match: MDH_PSYA2 (Malate dehydrogenase OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=mdh PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 2.354e-37
Identity = 76/139 (54.68%), Postives = 98/139 (70.50%), Query Frame = 2
Query:   23 ELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPD 439
            EL D AFPL+ G+V T DA  A   V+ A++VG  PR  GMERKD++  N +I+ AQ  AL   A+ + KVLVV NPANTNALI +  AP +  +N T +TRLDHNRA+ Q++ K +  V+DVK +IIWGNHSS+QYPD
Sbjct:   58 ELEDCAFPLLAGIVQTDDATVAFKDVDYALLVGSRPRGPGMERKDLLEANAAIFSAQGKALNDVASRDVKVLVVGNPANTNALIAQRNAPDLDPRNFTAMTRLDHNRAMAQLAGKTDSTVNDVKKMIIWGNHSSTQYPD 196          
BLAST of CX287318 vs. ExPASy Swiss-Prot
Match: MDH_PSYCK (Malate dehydrogenase OS=Psychrobacter cryohalolentis (strain K5) GN=mdh PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 4.016e-37
Identity = 76/139 (54.68%), Postives = 98/139 (70.50%), Query Frame = 2
Query:   23 ELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPD 439
            EL D AFPL+ GVV T DA  A   V+ A++VG  PR  GMERKD++  N +I+ AQ  AL   A+ + KVLVV NPANTNA+I +  AP +  +N T +TRLDHNRA+ Q++ K +  V+DVK +IIWGNHSS+QYPD
Sbjct:   58 ELEDCAFPLLAGVVQTDDATVAFKDVDYALLVGSRPRGPGMERKDLLEANAAIFSAQGKALNDVASRDVKVLVVGNPANTNAVIAQRNAPDLDPRNFTAMTRLDHNRAMAQLAGKTDSTVNDVKKMIIWGNHSSTQYPD 196          
BLAST of CX287318 vs. ExPASy Swiss-Prot
Match: MDH_FRAAA (Malate dehydrogenase OS=Frankia alni (strain ACN14a) GN=mdh PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 4.016e-37
Identity = 72/139 (51.80%), Postives = 99/139 (71.22%), Query Frame = 2
Query:   23 ELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPD 439
            EL D+AFPL+ GV    DA  A  G N+A++VG  PR +GMER D++S N  I+K Q  A+   AA + +VLVV NPANTNALI +  AP +PA+  T +TRLDHNRA+ Q+++KL V  ++++ + IWGNHS++QYPD
Sbjct:   57 ELEDSAFPLLAGVDVFDDAKRAFEGTNVALLVGARPRTKGMERGDLLSANGGIFKPQGEAINSGAAEDIRVLVVGNPANTNALIAQTHAPDVPAERFTAMTRLDHNRAIAQLAKKLGVPSAEIRKITIWGNHSATQYPD 195          
BLAST of CX287318 vs. ExPASy Swiss-Prot
Match: MDH_POLSQ (Malate dehydrogenase OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=mdh PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 5.245e-37
Identity = 73/139 (52.52%), Postives = 96/139 (69.06%), Query Frame = 2
Query:   23 ELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPD 439
            EL D AFPL+ G+ A +D + A   +++A++VG  PR  GMERKD++S N  I+ AQ  AL   A    KVLVV NPANTNA I  + AP IPAKN T + RLDHNRAL Q++ KLN  V+D++ +++WGNHS + YPD
Sbjct:   59 ELEDCAFPLLAGMTAHSDPMTAFKDIDVALLVGARPRGPGMERKDLLSANAQIFTAQGKALNAVAKKTVKVLVVGNPANTNAYIAMKSAPDIPAKNFTAMLRLDHNRALSQLANKLNKPVADIEKLVVWGNHSPTMYPD 197          
BLAST of CX287318 vs. ExPASy Swiss-Prot
Match: MDH_POLNS (Malate dehydrogenase OS=Polynucleobacter necessarius (strain STIR1) GN=mdh PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 6.850e-37
Identity = 73/139 (52.52%), Postives = 96/139 (69.06%), Query Frame = 2
Query:   23 ELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPD 439
            EL D AFPL+ G+ A +D + A   +++A++VG  PR  GMERKD++S N  I+ AQ  AL   A    KVLVV NPANTNA I  + AP IPAKN T + RLDHNRAL Q++ KLN  V+D++ +++WGNHS + YPD
Sbjct:   59 ELEDCAFPLLAGMTAHSDPMTAFKDIDVALLVGARPRGPGMERKDLLSANAQIFTAQGKALNVVAKKTVKVLVVGNPANTNAYIAMKSAPDIPAKNFTAMLRLDHNRALSQLANKLNKPVADIEKLVVWGNHSPTMYPD 197          
BLAST of CX287318 vs. ExPASy Swiss-Prot
Match: MDH_NITEC (Malate dehydrogenase OS=Nitrosomonas eutropha (strain C91) GN=mdh PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 6.850e-37
Identity = 72/139 (51.80%), Postives = 100/139 (71.94%), Query Frame = 2
Query:   23 ELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPD 439
            EL D AFPL+ G++AT D + A    +IA++VG  PR++GMERKD++  N  I++ Q   L Q A  + K+LVV NPANTN LI  + AP +PA+N + + RLDHNRAL Q++ KLN  VS++K +I+WGNHSS+Q+PD
Sbjct:   56 ELQDCAFPLLAGIIATHDPMMAFDQTDIAILVGARPRRKGMERKDLLQTNGEIFRNQGKILNQVAKRDAKILVVGNPANTNTLITMKNAPDLPAENFSGMLRLDHNRALSQVAMKLNQPVSNIKKMIVWGNHSSTQFPD 194          
The following BLAST results are available for this feature:
BLAST of CX287318 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 186
Match NameE-valueIdentityDescription
MDH_STRGG4.744e-3852.52Malate dehydrogenase OS=Streptomyces griseus subsp... [more]
MDH_STRCO8.091e-3853.24Malate dehydrogenase OS=Streptomyces coelicolor GN... [more]
MDH_PSYWF1.057e-3754.68Malate dehydrogenase OS=Psychrobacter sp. (strain ... [more]
MDH_FRASC1.803e-3752.52Malate dehydrogenase OS=Frankia sp. (strain CcI3) ... [more]
MDH_PSYA22.354e-3754.68Malate dehydrogenase OS=Psychrobacter arcticus (st... [more]
MDH_PSYCK4.016e-3754.68Malate dehydrogenase OS=Psychrobacter cryohalolent... [more]
MDH_FRAAA4.016e-3751.80Malate dehydrogenase OS=Frankia alni (strain ACN14... [more]
MDH_POLSQ5.245e-3752.52Malate dehydrogenase OS=Polynucleobacter sp. (stra... [more]
MDH_POLNS6.850e-3752.52Malate dehydrogenase OS=Polynucleobacter necessari... [more]
MDH_NITEC6.850e-3751.80Malate dehydrogenase OS=Nitrosomonas eutropha (str... [more]

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Properties
Property NameValue
Genbank descriptionC01008C02SK Veg1 Citrus clementina cDNA clone C01008C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287318 ID=CX287318; Name=CX287318; organism=Citrus clementina; type=EST; length=440bp
CTCGTGCCGAATTCGGCACGAGGAGTTGGTTGATGCTGCATTCCCTCTTA
TTAAAGGTGTTGTTGCTACAACTGATGCTGTTGAGGCATGCACTGGGGTC
AATATTGCCGTTATGGTTGGTGGCTTTCCAAGAAAAGAAGGAATGGAGAG
AAAAGATGTGATGTCAAAGAACGTTTCAATCTACAAGGCTCAGGCTTCTG
CCCTGGAGCAGCACGCAGCTCCGAACTGCAAGGTTCTAGTTGTCGCTAAC
CCTGCAAACACCAATGCATTGATTCTGAAAGAATTTGCGCCATCAATCCC
TGCTAAGAACATTACATGCTTGACCAGATTGGATCATAACAGGGCATTGG
GACAAATATCTGAGAAACTGAATGTCCAAGTATCTGATGTTAAGAATGTG
ATTATTTGGGGAAATCATTCATCATCTCAGTACCCTGATG
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