CX287318

Overview
NameCX287318
Unique NameCX287318
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length440
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14313 contig Ccv1_Contig14313:241..680. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287318 vs. ExPASy Swiss-Prot
Match: MDH_COXBN (Malate dehydrogenase OS=Coxiella burnetii (strain Dugway 5J108-111) GN=mdh PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 2.203e-35
Identity = 73/139 (52.52%), Postives = 93/139 (66.91%), Query Frame = 2
Query:   23 ELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPD 439
            EL D AFPL+  +V T+D   A   VN A++VG  PRK GMERKD++ KN SI+  Q  A+ ++AA + ++ VV NP NTN LI    AP IP      +TRLD NRA+GQ++ K  V V  VKN+IIWGNHSS+QYPD
Sbjct:   56 ELEDCAFPLLCNMVVTSDPRVAFNDVNWALLVGAAPRKAGMERKDLLEKNGSIFAGQGKAINENAASDVRIFVVGNPCNTNCLIAMNNAPDIPKDRFYAMTRLDQNRAIGQLALKAGVDVPSVKNMIIWGNHSSTQYPD 194          
BLAST of CX287318 vs. ExPASy Swiss-Prot
Match: MDH_AZOSB (Malate dehydrogenase OS=Azoarcus sp. (strain BH72) GN=mdh PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 2.203e-35
Identity = 72/142 (50.70%), Postives = 97/142 (68.31%), Query Frame = 2
Query:   23 ELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPS---IPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPD 439
            EL D AFPL+ G++AT D   A     +A++VG  PR  GMERKD++++N  I+  Q +A+ Q+A P+CKVLVV NP NTNA I KE A     +PAKN T + RLDHNRAL Q++ K   +VS +KN+++WGNHS + Y D
Sbjct:   57 ELEDCAFPLLAGMIATDDPNVAFKDAKVALLVGARPRGPGMERKDLLTENAKIFTVQGAAIGQYADPDCKVLVVGNPCNTNAYIAKEVAQKYGRVPAKNFTGMLRLDHNRALSQLAGKSGREVSSLKNLVVWGNHSPTMYAD 198          
BLAST of CX287318 vs. ExPASy Swiss-Prot
Match: MDH_BORPE (Malate dehydrogenase OS=Bordetella pertussis GN=mdh PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 2.878e-35
Identity = 73/139 (52.52%), Postives = 94/139 (67.63%), Query Frame = 2
Query:   23 ELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPD 439
            EL D AFPL+  V A +D   A    ++A++VG  PR  GMERKD++S N  I+ AQ  AL   A+ N KVLVV NPANTNA I  + AP +PAKN T + RLDHNRAL Q+S K   +V+D++ +I+WGNHS + YPD
Sbjct:   59 ELEDCAFPLLHEVTAHSDPRTAFKDADVALLVGARPRGPGMERKDLLSVNAQIFTAQGRALNDVASRNVKVLVVGNPANTNAYIAMKSAPDLPAKNFTAMLRLDHNRALSQLSAKSGKRVADIEKLIVWGNHSPTMYPD 197          
BLAST of CX287318 vs. ExPASy Swiss-Prot
Match: MDH_BORPA (Malate dehydrogenase OS=Bordetella parapertussis GN=mdh PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 2.878e-35
Identity = 73/139 (52.52%), Postives = 94/139 (67.63%), Query Frame = 2
Query:   23 ELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPD 439
            EL D AFPL+  V A +D   A    ++A++VG  PR  GMERKD++S N  I+ AQ  AL   A+ N KVLVV NPANTNA I  + AP +PAKN T + RLDHNRAL Q+S K   +V+D++ +I+WGNHS + YPD
Sbjct:   59 ELEDCAFPLLHEVTAHSDPRTAFKDADVALLVGARPRGPGMERKDLLSVNAQIFTAQGRALNDVASRNVKVLVVGNPANTNAYIAMKSAPDLPAKNFTAMLRLDHNRALSQLSAKSGKRVADIEKLIVWGNHSPTMYPD 197          
BLAST of CX287318 vs. ExPASy Swiss-Prot
Match: MDH_BORBR (Malate dehydrogenase OS=Bordetella bronchiseptica GN=mdh PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 2.878e-35
Identity = 73/139 (52.52%), Postives = 94/139 (67.63%), Query Frame = 2
Query:   23 ELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPD 439
            EL D AFPL+  V A +D   A    ++A++VG  PR  GMERKD++S N  I+ AQ  AL   A+ N KVLVV NPANTNA I  + AP +PAKN T + RLDHNRAL Q+S K   +V+D++ +I+WGNHS + YPD
Sbjct:   59 ELEDCAFPLLHEVTAHSDPRTAFKDADVALLVGARPRGPGMERKDLLSVNAQIFTAQGRALNDVASRNVKVLVVGNPANTNAYIAMKSAPDLPAKNFTAMLRLDHNRALSQLSAKSGKRVADIEKLIVWGNHSPTMYPD 197          
BLAST of CX287318 vs. ExPASy Swiss-Prot
Match: MDH_BURP8 (Malate dehydrogenase OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=mdh PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 4.909e-35
Identity = 70/139 (50.36%), Postives = 93/139 (66.91%), Query Frame = 2
Query:   23 ELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPD 439
            EL D AFPL+ GVV T D   A    ++A++VG  PR +GMERKD++S N  I+  Q  AL + A+ + KVLVV NPANTNA I  + AP +P KN T + RLDHNRAL Q++ K    VS ++ +++WGNHS + YPD
Sbjct:   57 ELEDCAFPLLAGVVVTDDPKVAFKDADVALLVGARPRSKGMERKDLLSANAEIFTVQGKALNEVASRDVKVLVVGNPANTNAYIAMKSAPDLPKKNFTAMLRLDHNRALSQLAAKSGKPVSSIEKLVVWGNHSPTMYPD 195          
BLAST of CX287318 vs. ExPASy Swiss-Prot
Match: MDH_JANMA (Malate dehydrogenase OS=Janthinobacterium sp. (strain Marseille) GN=mdh PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 8.373e-35
Identity = 69/139 (49.64%), Postives = 95/139 (68.35%), Query Frame = 2
Query:   23 ELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPD 439
            E+ D AFPL+ GV A +D + A    ++A++VG  PR  GMERKD++  N  I+  Q  AL+  A+ N KVLVV NPANTNA I  + AP++PAKN T + RLDHNRAL QI+ K++  V+ ++ + +WGNHS + YPD
Sbjct:   59 EIDDCAFPLLAGVTAHSDPMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKALDAVASRNVKVLVVGNPANTNAYIAMKSAPNLPAKNFTAMLRLDHNRALSQIAAKISKPVTSIEKLTVWGNHSPTMYPD 197          
BLAST of CX287318 vs. ExPASy Swiss-Prot
Match: MDH_DEIGD (Malate dehydrogenase OS=Deinococcus geothermalis (strain DSM 11300) GN=mdh PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 8.373e-35
Identity = 71/139 (51.08%), Postives = 94/139 (67.63%), Query Frame = 2
Query:   23 ELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPD 439
            EL D AFPL+  +V + D + A    + A++VG  PRK GMER D++  N  I+K Q  AL + A+ + KVLVV NPANTNALI ++ AP +  K  T + RLDHNRA+ Q++EK    VS +KN+ IWGNHSS+QYPD
Sbjct:   62 ELRDCAFPLLADIVTSDDPLVAFKDADYALLVGAMPRKAGMERGDLLGANGGIFKPQGEALNKVASRDVKVLVVGNPANTNALIAQQNAPDLDPKQFTAMVRLDHNRAISQLAEKTGQPVSAIKNITIWGNHSSTQYPD 200          
BLAST of CX287318 vs. ExPASy Swiss-Prot
Match: MDH_BORPD (Malate dehydrogenase OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=mdh PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 8.373e-35
Identity = 71/139 (51.08%), Postives = 94/139 (67.63%), Query Frame = 2
Query:   23 ELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPD 439
            EL D AFPL++ V A +D   A    ++A++VG  PR  GMERKD++S N  I+ AQ  AL   A+ N KVLVV NPANTNA I  + AP +PAKN T + RLDHNRAL Q++ K    V+D++ +++WGNHS + YPD
Sbjct:   59 ELDDCAFPLLQEVTAHSDPRTAFKDADVALLVGARPRGPGMERKDLLSVNAQIFTAQGKALNDVASRNVKVLVVGNPANTNAYIAMKSAPDLPAKNFTAMLRLDHNRALSQLAAKSGKAVADIEKLVVWGNHSPTMYPD 197          
BLAST of CX287318 vs. ExPASy Swiss-Prot
Match: MDH_DEIDV (Malate dehydrogenase OS=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) GN=mdh PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.094e-34
Identity = 71/139 (51.08%), Postives = 94/139 (67.63%), Query Frame = 2
Query:   23 ELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPD 439
            EL D A+PL+  VV + D + A    + A++VG  PRK GMER D++  N  I+K Q  AL Q A+ + KVLVV NPANTNALI ++ AP +  +  T + RLDHNRA+ Q++EK    VS +KN+ IWGNHSS+QYPD
Sbjct:   58 ELRDGAYPLLADVVTSDDPLVAFKDADYALLVGAMPRKAGMERGDLLGANGGIFKPQGQALNQVASRDVKVLVVGNPANTNALIAQQNAPDLDPRQFTAMVRLDHNRAISQLAEKTGQPVSAIKNITIWGNHSSTQYPD 196          
The following BLAST results are available for this feature:
BLAST of CX287318 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 186
Match NameE-valueIdentityDescription
MDH_COXBN2.203e-3552.52Malate dehydrogenase OS=Coxiella burnetii (strain ... [more]
MDH_AZOSB2.203e-3550.70Malate dehydrogenase OS=Azoarcus sp. (strain BH72)... [more]
MDH_BORPE2.878e-3552.52Malate dehydrogenase OS=Bordetella pertussis GN=md... [more]
MDH_BORPA2.878e-3552.52Malate dehydrogenase OS=Bordetella parapertussis G... [more]
MDH_BORBR2.878e-3552.52Malate dehydrogenase OS=Bordetella bronchiseptica ... [more]
MDH_BURP84.909e-3550.36Malate dehydrogenase OS=Burkholderia phymatum (str... [more]
MDH_JANMA8.373e-3549.64Malate dehydrogenase OS=Janthinobacterium sp. (str... [more]
MDH_DEIGD8.373e-3551.08Malate dehydrogenase OS=Deinococcus geothermalis (... [more]
MDH_BORPD8.373e-3551.08Malate dehydrogenase OS=Bordetella petrii (strain ... [more]
MDH_DEIDV1.094e-3451.08Malate dehydrogenase OS=Deinococcus deserti (strai... [more]

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Properties
Property NameValue
Genbank descriptionC01008C02SK Veg1 Citrus clementina cDNA clone C01008C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287318 ID=CX287318; Name=CX287318; organism=Citrus clementina; type=EST; length=440bp
CTCGTGCCGAATTCGGCACGAGGAGTTGGTTGATGCTGCATTCCCTCTTA
TTAAAGGTGTTGTTGCTACAACTGATGCTGTTGAGGCATGCACTGGGGTC
AATATTGCCGTTATGGTTGGTGGCTTTCCAAGAAAAGAAGGAATGGAGAG
AAAAGATGTGATGTCAAAGAACGTTTCAATCTACAAGGCTCAGGCTTCTG
CCCTGGAGCAGCACGCAGCTCCGAACTGCAAGGTTCTAGTTGTCGCTAAC
CCTGCAAACACCAATGCATTGATTCTGAAAGAATTTGCGCCATCAATCCC
TGCTAAGAACATTACATGCTTGACCAGATTGGATCATAACAGGGCATTGG
GACAAATATCTGAGAAACTGAATGTCCAAGTATCTGATGTTAAGAATGTG
ATTATTTGGGGAAATCATTCATCATCTCAGTACCCTGATG
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