CX287318

Overview
NameCX287318
Unique NameCX287318
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length440
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14313 contig Ccv1_Contig14313:241..680. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX287318 vs. ExPASy Swiss-Prot
Match: MDH_XANC8 (Malate dehydrogenase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=mdh PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 4.156e-34
Identity = 70/139 (50.36%), Postives = 94/139 (67.63%), Query Frame = 2 
Query:   23 ELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPD 439
            EL D AFPL+ G+V T DA  A   +++A++VG  PR  GMERKD++ +N  I+ AQ +AL + A  + KVLVV NPANTNA I  + AP +  KN T + RLDHNRAL Q+S KL   V  ++ +++WGNHS + YPD
Sbjct:   58 ELEDCAFPLLAGMVGTDDAEVAFKDIDVALLVGARPRGPGMERKDLLLENAKIFTAQGAALNKVAKRDVKVLVVGNPANTNAYIAMKSAPDLNPKNFTAMLRLDHNRALSQLSLKLGKPVGGIEKLVVWGNHSPTMYPD 196
[Close]
BLAST of CX287318 vs. ExPASy Swiss-Prot
Match: MDH_XANC5 (Malate dehydrogenase OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=mdh PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 4.156e-34
Identity = 72/139 (51.80%), Postives = 93/139 (66.91%), Query Frame = 2 
Query:   23 ELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPD 439
            EL D AFPL+ G+V T DA  A   V+IA++VG  PR  GMERKD++  N  I+ AQ +AL + A  + KVLVV NPANTNA I  + AP +  KN T + RLDHNRAL Q+S KL   V+ ++ + +WGNHS + YPD
Sbjct:   58 ELEDCAFPLLAGMVGTDDAEVAFKDVDIALLVGSRPRGPGMERKDLLLANAEIFTAQGAALNKVAKRDVKVLVVGNPANTNAYIAMKSAPDLDPKNFTAMLRLDHNRALSQLSAKLGKPVAGIEKLAVWGNHSPTMYPD 196
[Close]
BLAST of CX287318 vs. ExPASy Swiss-Prot
Match: MDH_DESPS (Malate dehydrogenase OS=Desulfotalea psychrophila GN=mdh PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 4.156e-34
Identity = 71/139 (51.08%), Postives = 93/139 (66.91%), Query Frame = 2 
Query:   23 ELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPD 439
            EL D AFPL+ G+V + D   A    + A++VG  PR  GMER D++  N  I+  Q  AL   A P  KVLVV NPANTNALIL + AP I  +NIT + RLDHNRAL Q+++K+    SDV+ +++WGNHS+SQ+PD
Sbjct:   56 ELEDCAFPLLHGLVCSDDVHVAFKDADYAILVGARPRGPGMERSDLIQANGPIFTTQGEALSAEANPEVKVLVVGNPANTNALILLKNAPYINPRNITAMMRLDHNRALFQVAKKMGCHCSDVEKMVVWGNHSASQFPD 194
[Close]
BLAST of CX287318 vs. ExPASy Swiss-Prot
Match: MDH_BURXL (Malate dehydrogenase OS=Burkholderia xenovorans (strain LB400) GN=mdh PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 4.156e-34
Identity = 69/139 (49.64%), Postives = 92/139 (66.19%), Query Frame = 2 
Query:   23 ELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPD 439
            EL D AFPL+ GVV T D   A    ++A++VG  PR +GMERKD++S N  I+  Q  AL + A+ + KVLVV NPANTNA I  + AP +P KN T + RLDHNRAL Q++ K    V+ ++ + +WGNHS + YPD
Sbjct:   57 ELDDCAFPLLSGVVITDDPKVAFKDADVALLVGARPRSKGMERKDLLSANAEIFTVQGKALNEVASRDVKVLVVGNPANTNAYIAMKSAPDLPKKNFTAMLRLDHNRALSQLAAKSGKPVASIEKLAVWGNHSPTMYPD 195
[Close]
BLAST of CX287318 vs. ExPASy Swiss-Prot
Match: MDH_BURPS (Malate dehydrogenase OS=Burkholderia pseudomallei GN=mdh PE=1 SV=3)

HSP 1 Score: 143.28 bits (360), Expect = 4.156e-34
Identity = 69/139 (49.64%), Postives = 93/139 (66.91%), Query Frame = 2 
Query:   23 ELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPD 439
            EL D AFPL+ GVV T D   A    ++A++VG  PR +GMERKD++S N  I+  Q +AL + A+ + KVLVV NPANTNA I  + AP +P KN T + RLDHNRAL Q++ K    V+ ++ + +WGNHS + YPD
Sbjct:   57 ELDDCAFPLLAGVVITDDPKVAFKDADVALLVGARPRSKGMERKDLLSANAEIFTVQGAALNEVASRDVKVLVVGNPANTNAYIAMKSAPDLPKKNFTAMLRLDHNRALSQLAAKSGKPVASIEKLAVWGNHSPTMYPD 195
[Close]
BLAST of CX287318 vs. ExPASy Swiss-Prot
Match: MDH_BURP6 (Malate dehydrogenase OS=Burkholderia pseudomallei (strain 668) GN=mdh PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 4.156e-34
Identity = 69/139 (49.64%), Postives = 93/139 (66.91%), Query Frame = 2 
Query:   23 ELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPD 439
            EL D AFPL+ GVV T D   A    ++A++VG  PR +GMERKD++S N  I+  Q +AL + A+ + KVLVV NPANTNA I  + AP +P KN T + RLDHNRAL Q++ K    V+ ++ + +WGNHS + YPD
Sbjct:   57 ELDDCAFPLLAGVVITDDPKVAFKDADVALLVGARPRSKGMERKDLLSANAEIFTVQGAALNEVASRDVKVLVVGNPANTNAYIAMKSAPDLPKKNFTAMLRLDHNRALSQLAAKSGKPVASIEKLAVWGNHSPTMYPD 195
[Close]
BLAST of CX287318 vs. ExPASy Swiss-Prot
Match: MDH_BURP1 (Malate dehydrogenase OS=Burkholderia pseudomallei (strain 1710b) GN=mdh PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 4.156e-34
Identity = 69/139 (49.64%), Postives = 93/139 (66.91%), Query Frame = 2 
Query:   23 ELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPD 439
            EL D AFPL+ GVV T D   A    ++A++VG  PR +GMERKD++S N  I+  Q +AL + A+ + KVLVV NPANTNA I  + AP +P KN T + RLDHNRAL Q++ K    V+ ++ + +WGNHS + YPD
Sbjct:   57 ELDDCAFPLLAGVVITDDPKVAFKDADVALLVGARPRSKGMERKDLLSANAEIFTVQGAALNEVASRDVKVLVVGNPANTNAYIAMKSAPDLPKKNFTAMLRLDHNRALSQLAAKSGKPVASIEKLAVWGNHSPTMYPD 195
[Close]
BLAST of CX287318 vs. ExPASy Swiss-Prot
Match: MDH_BURP0 (Malate dehydrogenase OS=Burkholderia pseudomallei (strain 1106a) GN=mdh PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 4.156e-34
Identity = 69/139 (49.64%), Postives = 93/139 (66.91%), Query Frame = 2 
Query:   23 ELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPD 439
            EL D AFPL+ GVV T D   A    ++A++VG  PR +GMERKD++S N  I+  Q +AL + A+ + KVLVV NPANTNA I  + AP +P KN T + RLDHNRAL Q++ K    V+ ++ + +WGNHS + YPD
Sbjct:   57 ELDDCAFPLLAGVVITDDPKVAFKDADVALLVGARPRSKGMERKDLLSANAEIFTVQGAALNEVASRDVKVLVVGNPANTNAYIAMKSAPDLPKKNFTAMLRLDHNRALSQLAAKSGKPVASIEKLAVWGNHSPTMYPD 195
[Close]
BLAST of CX287318 vs. ExPASy Swiss-Prot
Match: MDH_BURMS (Malate dehydrogenase OS=Burkholderia mallei (strain SAVP1) GN=mdh PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 4.156e-34
Identity = 69/139 (49.64%), Postives = 93/139 (66.91%), Query Frame = 2 
Query:   23 ELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPD 439
            EL D AFPL+ GVV T D   A    ++A++VG  PR +GMERKD++S N  I+  Q +AL + A+ + KVLVV NPANTNA I  + AP +P KN T + RLDHNRAL Q++ K    V+ ++ + +WGNHS + YPD
Sbjct:   57 ELDDCAFPLLAGVVITDDPKVAFKDADVALLVGARPRSKGMERKDLLSANAEIFTVQGAALNEVASRDVKVLVVGNPANTNAYIAMKSAPDLPKKNFTAMLRLDHNRALSQLAAKSGKPVASIEKLAVWGNHSPTMYPD 195
[Close]
BLAST of CX287318 vs. ExPASy Swiss-Prot
Match: MDH_BURMA (Malate dehydrogenase OS=Burkholderia mallei GN=mdh PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 4.156e-34
Identity = 69/139 (49.64%), Postives = 93/139 (66.91%), Query Frame = 2 
Query:   23 ELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPD 439
            EL D AFPL+ GVV T D   A    ++A++VG  PR +GMERKD++S N  I+  Q +AL + A+ + KVLVV NPANTNA I  + AP +P KN T + RLDHNRAL Q++ K    V+ ++ + +WGNHS + YPD
Sbjct:   57 ELDDCAFPLLAGVVITDDPKVAFKDADVALLVGARPRSKGMERKDLLSANAEIFTVQGAALNEVASRDVKVLVVGNPANTNAYIAMKSAPDLPKKNFTAMLRLDHNRALSQLAAKSGKPVASIEKLAVWGNHSPTMYPD 195
The following BLAST results are available for this feature:
BLAST of CX287318 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 186
Match NameE-valueIdentityDescription
MDH_XANC84.156e-3450.36Malate dehydrogenase OS=Xanthomonas campestris pv.... [more]
MDH_XANC54.156e-3451.80Malate dehydrogenase OS=Xanthomonas campestris pv.... [more]
MDH_DESPS4.156e-3451.08Malate dehydrogenase OS=Desulfotalea psychrophila ... [more]
MDH_BURXL4.156e-3449.64Malate dehydrogenase OS=Burkholderia xenovorans (s... [more]
MDH_BURPS4.156e-3449.64Malate dehydrogenase OS=Burkholderia pseudomallei ... [more]
MDH_BURP64.156e-3449.64Malate dehydrogenase OS=Burkholderia pseudomallei ... [more]
MDH_BURP14.156e-3449.64Malate dehydrogenase OS=Burkholderia pseudomallei ... [more]
MDH_BURP04.156e-3449.64Malate dehydrogenase OS=Burkholderia pseudomallei ... [more]
MDH_BURMS4.156e-3449.64Malate dehydrogenase OS=Burkholderia mallei (strai... [more]
MDH_BURMA4.156e-3449.64Malate dehydrogenase OS=Burkholderia mallei GN=mdh... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01008C02SK Veg1 Citrus clementina cDNA clone C01008C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287318 ID=CX287318; Name=CX287318; organism=Citrus clementina; type=EST; length=440bp
CTCGTGCCGAATTCGGCACGAGGAGTTGGTTGATGCTGCATTCCCTCTTA
TTAAAGGTGTTGTTGCTACAACTGATGCTGTTGAGGCATGCACTGGGGTC
AATATTGCCGTTATGGTTGGTGGCTTTCCAAGAAAAGAAGGAATGGAGAG
AAAAGATGTGATGTCAAAGAACGTTTCAATCTACAAGGCTCAGGCTTCTG
CCCTGGAGCAGCACGCAGCTCCGAACTGCAAGGTTCTAGTTGTCGCTAAC
CCTGCAAACACCAATGCATTGATTCTGAAAGAATTTGCGCCATCAATCCC
TGCTAAGAACATTACATGCTTGACCAGATTGGATCATAACAGGGCATTGG
GACAAATATCTGAGAAACTGAATGTCCAAGTATCTGATGTTAAGAATGTG
ATTATTTGGGGAAATCATTCATCATCTCAGTACCCTGATG
back to top