CX287325

Overview
NameCX287325
Unique NameCX287325
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length414
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: PAT_SALA4 (Putrescine aminotransferase OS=Salmonella agona (strain SL483) GN=patA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.320e-15
Identity = 40/128 (31.25%), Postives = 69/128 (53.91%), Query Frame = 2
Query:    5 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS--PIIGEIRGTGLILGTEFADNKS 382
            GR G MF C+  +++PD++  AKAL    MPIGA + + EV  V+         F H  T+ G+P++CA A+  + +  E+N+  Q  +      DG +  +     ++ + RG G+++  EF DN++
Sbjct:  278 GRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFD-----NPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDTLLDGFRQLAREYPNLVHDARGKGMLMAIEFVDNET 400          
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: PAT_ENTS8 (Putrescine aminotransferase OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=patA PE=3 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 1.320e-15
Identity = 41/128 (32.03%), Postives = 68/128 (53.12%), Query Frame = 2
Query:    5 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS--PIIGEIRGTGLILGTEFADNKS 382
            GR G MF C+  +++PD++  AKAL    MPIGA + + EV  V+         F H  T+ G+P++CA A+  + +  E N+  Q  +      DG +  +     ++ E RG G+++  EF DN++
Sbjct:  278 GRTGKMFACEHENVQPDILCLAKALGGGVMPIGATVATEEVFSVLFD-----NPFLHTTTFGGNPLACAAALATIHVLLEENLPAQAEQKGDMLLDGFRQLAREYPHLVQEARGRGMLMAIEFVDNET 400          
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: OAT_PLAFD (Ornithine aminotransferase OS=Plasmodium falciparum (isolate CDC / Honduras) GN=OAT PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.252e-15
Identity = 44/125 (35.20%), Postives = 68/125 (54.40%), Query Frame = 2
Query:    5 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKI-APKFQDGVKAFSDSPIIGEIRGTGLILGTEFADN 376
            GR G +     Y +KPD++   KALS  + PI AIL + +V  V       L    HG TY G+P++ A+ +EALK+     + E  +K+ AP  Q+  +   DS ++ E+RG GL+   EF ++
Sbjct:  240 GRTGKLLCTHHYGVKPDVILLGKALSGGHYPISAILANDDVMLV-------LKPGEHGSTYGGNPLAAAICVEALKVLINEKLCENADKLGAPFLQNLKEQLKDSKVVREVRGKGLLCAIEFKND 357          
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: OAT_PLAF7 (Ornithine aminotransferase OS=Plasmodium falciparum (isolate 3D7) GN=OAT PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.252e-15
Identity = 44/125 (35.20%), Postives = 68/125 (54.40%), Query Frame = 2
Query:    5 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKI-APKFQDGVKAFSDSPIIGEIRGTGLILGTEFADN 376
            GR G +     Y +KPD++   KALS  + PI AIL + +V  V       L    HG TY G+P++ A+ +EALK+     + E  +K+ AP  Q+  +   DS ++ E+RG GL+   EF ++
Sbjct:  240 GRTGKLLCTHHYGVKPDVILLGKALSGGHYPISAILANDDVMLV-------LKPGEHGSTYGGNPLAAAICVEALKVLINEKLCENADKLGAPFLQNLKEQLKDSKVVREVRGKGLLCAIEFKND 357          
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: PAT_SALPK (Putrescine aminotransferase OS=Salmonella paratyphi A (strain AKU_12601) GN=patA PE=3 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 2.942e-15
Identity = 40/128 (31.25%), Postives = 68/128 (53.12%), Query Frame = 2
Query:    5 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS--PIIGEIRGTGLILGTEFADNKS 382
            GR G MF C+  +++PD++  AKAL    MPIGA + + EV  V+         F H  T+ G+P++CA A+  + +  E+N+  Q  +      D  +  +     ++ E RG G+++  EF DN++
Sbjct:  278 GRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFD-----NPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDTLLDSFRQLAREYPNLVHEARGKGMLMAIEFVDNET 400          
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: PAT_SALPA (Putrescine aminotransferase OS=Salmonella paratyphi A GN=patA PE=3 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 2.942e-15
Identity = 40/128 (31.25%), Postives = 68/128 (53.12%), Query Frame = 2
Query:    5 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS--PIIGEIRGTGLILGTEFADNKS 382
            GR G MF C+  +++PD++  AKAL    MPIGA + + EV  V+         F H  T+ G+P++CA A+  + +  E+N+  Q  +      D  +  +     ++ E RG G+++  EF DN++
Sbjct:  278 GRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFD-----NPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDTLLDSFRQLAREYPNLVHEARGKGMLMAIEFVDNET 400          
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: PAT_ENT38 (Putrescine aminotransferase OS=Enterobacter sp. (strain 638) GN=patA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.942e-15
Identity = 41/127 (32.28%), Postives = 66/127 (51.97%), Query Frame = 2
Query:    5 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS--PIIGEIRGTGLILGTEFADNK 379
            GR G MF C+  +++PD++  AKAL    MPIGA + + EV  V+         F H  T+ G+P+SCA A+  + +  E+N+  Q  +      DG          ++ + RG G+++  EF DN+
Sbjct:  278 GRTGKMFACEHENVQPDILCLAKALGGGVMPIGATVATEEVFSVLFD-----NPFLHTTTFGGNPLSCAAALATINVLLEQNLPAQAEQKGDMLLDGFLQLGREYPDLVQDARGKGMLIAIEFVDNE 399          
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: PAT_CITK8 (Putrescine aminotransferase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=patA PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 5.018e-15
Identity = 39/127 (30.71%), Postives = 67/127 (52.76%), Query Frame = 2
Query:    5 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS--PIIGEIRGTGLILGTEFADNK 379
            GR G MF C+  +++PD++  AKAL    MP+GA + + EV  V+         F H  T+ G+P++CA A+  + +  E+N+  Q  +      DG    +     ++ + RG G+++  EF DN+
Sbjct:  278 GRTGKMFACEHENVQPDILCLAKALGGGVMPVGATIATEEVFSVLFD-----NPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDMLLDGFLQLAREYPDLVQDARGKGMLMAIEFVDNE 399          
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: OAT_MACCJ (Ornithine aminotransferase OS=Macrococcus caseolyticus (strain JCSC5402) GN=rocD PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.018e-15
Identity = 43/127 (33.86%), Postives = 67/127 (52.76%), Query Frame = 2
Query:    5 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSP 385
            GR G MF  D  ++ PD+    KAL     PI  +L   E+ EV ++        SHG T+ G+P++CAV+  AL +  +  + E+  ++   FQ  +K   D+P+I E+RG GL +G E  +   P
Sbjct:  233 GRSGKMFATDWDNVVPDMYILGKALGGGVFPISCVLADKEILEVFNAG-------SHGSTFGGNPLACAVSNAALDVLVDEKLAERSLELGEYFQSKLKEI-DNPVIKEVRGKGLFIGVELNEAARP 351          
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: OAT_STACT (Ornithine aminotransferase OS=Staphylococcus carnosus (strain TM300) GN=rocD PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.559e-15
Identity = 45/127 (35.43%), Postives = 69/127 (54.33%), Query Frame = 2
Query:    5 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSP 385
            GR G  F  D   +K D+    KAL    +PI A+    EV +V      T GS  HG T+ G+P++ AV+I AL + ++  + E+  ++   FQD +K   D+P+I E+RG GL +G E  ++  P
Sbjct:  233 GRSGKTFATDWDGVKLDVYILGKALGGGVLPISAVAADSEVLDVF-----TPGS--HGSTFGGNPLAAAVSIAALDVLEDEKLAERSRELGEYFQDELKKI-DNPVIKEVRGRGLFIGVELNEDARP 351          
The following BLAST results are available for this feature:
BLAST of CX287325 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
PAT_SALA41.320e-1531.25Putrescine aminotransferase OS=Salmonella agona (s... [more]
PAT_ENTS81.320e-1532.03Putrescine aminotransferase OS=Enterobacter sakaza... [more]
OAT_PLAFD2.252e-1535.20Ornithine aminotransferase OS=Plasmodium falciparu... [more]
OAT_PLAF72.252e-1535.20Ornithine aminotransferase OS=Plasmodium falciparu... [more]
PAT_SALPK2.942e-1531.25Putrescine aminotransferase OS=Salmonella paratyph... [more]
PAT_SALPA2.942e-1531.25Putrescine aminotransferase OS=Salmonella paratyph... [more]
PAT_ENT382.942e-1532.28Putrescine aminotransferase OS=Enterobacter sp. (s... [more]
PAT_CITK85.018e-1530.71Putrescine aminotransferase OS=Citrobacter koseri ... [more]
OAT_MACCJ5.018e-1533.86Ornithine aminotransferase OS=Macrococcus caseolyt... [more]
OAT_STACT8.559e-1535.43Ornithine aminotransferase OS=Staphylococcus carno... [more]

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Properties
Property NameValue
Genbank descriptionC01008C10SK Veg1 Citrus clementina cDNA clone C01008C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287325 ID=CX287325; Name=CX287325; organism=Citrus clementina; type=EST; length=414bp
ATTTGGAAGACTTGGCACAATGTTTGGTTGTGACAAATACAGCATTAAAC
CAGATCTTGTGTCCTTCGCAAAGGCCCTTTCTTCAGCATATATGCCCATT
GGAGCTATTCTTGTGAGTCCCGAAGTTTCAGAAGTCATTCACTCTCAAAG
CAACACACTTGGTTCTTTCTCTCATGGATTTACTTATTCTGGGCATCCTG
TTTCCTGTGCCGTTGCCATCGAAGCGCTTAAGATTTACAAGGAAAGAAAT
ATTGTTGAGCAAGTAAATAAGATAGCGCCAAAGTTTCAAGATGGTGTAAA
AGCCTTTTCTGATAGTCCCATCATTGGAGAGATTCGGGGCACTGGTTTGA
TTCTTGGTACAGAGTTTGCAGACAACAAGTCTCCAAATGAACCGTTCCCT
CCTGAATGGGGGAT
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