CX287325

Overview
NameCX287325
Unique NameCX287325
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length414
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: ARGD_SHIFL (Acetylornithine/succinyldiaminopimelate aminotransferase OS=Shigella flexneri GN=argD PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.366e-12
Identity = 40/121 (33.06%), Postives = 63/121 (52.07%), Query Frame = 2
Query:    5 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS-PIIGEIRGTGLILGTE 364
            GR G +F    Y + PD+++ AKAL   + PI A+L + E++   H  S       HG TY G+P++CAVA  A  I     ++E +     +F D ++       +  +IRG GL++G E
Sbjct:  233 GRTGDLFAYRYYGVTPDILTSAKALGGGF-PISAMLTTAEIASAFHPGS-------HGSTYGGNPLACAVAGAAFDIINTPEVLEGIQAKRQRFVDHLQKIDQQYDVFSDIRGMGLLIGAE 345          
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: ARGD_ECOLI (Acetylornithine/succinyldiaminopimelate aminotransferase OS=Escherichia coli (strain K12) GN=argD PE=1 SV=4)

HSP 1 Score: 71.633 bits (174), Expect = 1.366e-12
Identity = 40/121 (33.06%), Postives = 63/121 (52.07%), Query Frame = 2
Query:    5 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS-PIIGEIRGTGLILGTE 364
            GR G +F    Y + PD+++ AKAL   + PI A+L + E++   H  S       HG TY G+P++CAVA  A  I     ++E +     +F D ++       +  +IRG GL++G E
Sbjct:  233 GRTGDLFAYMHYGVTPDILTSAKALGGGF-PISAMLTTAEIASAFHPGS-------HGSTYGGNPLACAVAGAAFDIINTPEVLEGIQAKRQRFVDHLQKIDQQYDVFSDIRGMGLLIGAE 345          
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: ARGD_ECO57 (Acetylornithine/succinyldiaminopimelate aminotransferase OS=Escherichia coli O157:H7 GN=argD PE=3 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 1.366e-12
Identity = 40/121 (33.06%), Postives = 63/121 (52.07%), Query Frame = 2
Query:    5 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS-PIIGEIRGTGLILGTE 364
            GR G +F    Y + PD+++ AKAL   + PI A+L + E++   H  S       HG TY G+P++CAVA  A  I     ++E +     +F D ++       +  +IRG GL++G E
Sbjct:  233 GRTGDLFAYMHYGVTPDILTSAKALGGGF-PISAMLTTAEIASAFHPGS-------HGSTYGGNPLACAVAGAAFDIINTPEVLEGIQAKRQRFVDHLQKIDQQYDVFSDIRGMGLLIGAE 345          
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: AGT2_MOUSE (Alanine--glyoxylate aminotransferase 2, mitochondrial OS=Mus musculus GN=Agxt2 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.366e-12
Identity = 39/138 (28.26%), Postives = 75/138 (54.35%), Query Frame = 2
Query:    2 FGRLGTMF-GCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAP----KFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFP 400
            FGRLG+ F G   + + PD+V+ AK + + + P+ A++ +PE+++ +  +        H  T+ G+P++CA+    L++ +E N+     ++      KF    K   +  I+G++RG GL++G E   +K   +P P
Sbjct:  325 FGRLGSHFWGFQTHDVLPDIVTMAKGIGNGF-PMAAVVTTPEIAKSLAKR------LLHFSTFGGNPLACAIGSAVLEVIEEENLQRNSQEVGTYMLLKF---AKLRDEFDIVGDVRGKGLMVGIEMVQDKISRQPLP 452          
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: OAT_GEOSW (Ornithine aminotransferase OS=Geobacillus sp. (strain WCH70) GN=rocD PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.331e-12
Identity = 40/127 (31.50%), Postives = 64/127 (50.39%), Query Frame = 2
Query:    5 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSP 385
            GR G MF CD  ++ PD+    KAL     PI  +  + ++  V +         SHG T+ G+P++CAV+I AL +  E  + E+  ++   F + ++     P I E+RG GL +G E   +  P
Sbjct:  233 GRSGKMFACDWENVVPDMYILGKALGGGVFPISCVAANRDILGVFNPG-------SHGSTFGGNPLACAVSIAALDVIIEEKLPERSLELGNYFIEKLREI-QHPDIKEVRGRGLFIGVELHTSARP 351          
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: BIOB_BACFR (Biotin synthase OS=Bacteroides fragilis GN=bioB PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.044e-12
Identity = 35/117 (29.91%), Postives = 65/117 (55.56%), Query Frame = 2
Query:    2 FGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLI 352
            FGR G +F  +   ++PD++   KAL+  YM + A+L + EV++ I   ++  G+F HG T+ G+P++CAVA  ++++       E V +I  +    +    + P + ++R  G I
Sbjct:  568 FGRTGKLFAWEHAGVEPDIMCIGKALTGGYMTLSAVLTTNEVADCI--SNHAPGAFMHGPTFMGNPLACAVACASVRLLLTSGWQENVKRIEAQLNRELAPARELPQVADVRVLGAI 682          
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: BIOB_BACFN (Biotin synthase OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=bioB PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.044e-12
Identity = 35/117 (29.91%), Postives = 65/117 (55.56%), Query Frame = 2
Query:    2 FGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLI 352
            FGR G +F  +   ++PD++   KAL+  YM + A+L + EV++ I   ++  G+F HG T+ G+P++CAVA  ++++       E V +I  +    +    + P + ++R  G I
Sbjct:  568 FGRTGKLFAWEHAGVEPDIMCIGKALTGGYMTLSAVLTTNEVADCI--SNHAPGAFMHGPTFMGNPLACAVACASVRLLLTSGWQENVKRIEAQLNRELAPARELPQVADVRVLGAI 682          
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: ARGD_SALTY (Acetylornithine/succinyldiaminopimelate aminotransferase OS=Salmonella typhimurium GN=argD PE=1 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 3.044e-12
Identity = 39/121 (32.23%), Postives = 65/121 (53.72%), Query Frame = 2
Query:    5 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS-PIIGEIRGTGLILGTE 364
            GR G +F    Y + PD+++ AKAL   + P+ A+L + E++   H  S       HG TY G+P++CAVA  A  I     +++ ++    +F   ++A  +   I  +IRG GL++G E
Sbjct:  233 GRTGDLFAYMHYGVTPDILTSAKALGGGF-PVSAMLTTQEIASAFHVGS-------HGSTYGGNPLACAVAGAAFDIINTPEVLQGIHTKRQQFVQHLQAIDEQFDIFSDIRGMGLLIGAE 345          
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: ARGD_SALTI (Acetylornithine/succinyldiaminopimelate aminotransferase OS=Salmonella typhi GN=argD PE=3 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 3.044e-12
Identity = 39/121 (32.23%), Postives = 65/121 (53.72%), Query Frame = 2
Query:    5 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS-PIIGEIRGTGLILGTE 364
            GR G +F    Y + PD+++ AKAL   + P+ A+L + E++   H  S       HG TY G+P++CAVA  A  I     +++ ++    +F   ++A  +   I  +IRG GL++G E
Sbjct:  233 GRTGDLFAYMHYGVTPDILTSAKALGGGF-PVSAMLTTQEIASAFHVGS-------HGSTYGGNPLACAVAGAAFDIINTPEVLQGIHTKRQQFVQHLQAIDEQFDIFSDIRGMGLLIGAE 345          
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: OAT_SCHPO (Probable ornithine aminotransferase OS=Schizosaccharomyces pombe GN=SPBC21C3.08c PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.976e-12
Identity = 40/125 (32.00%), Postives = 69/125 (55.20%), Query Frame = 2
Query:    8 RLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKS 382
            R G M   +  ++KPD+V   KA+S    P+ A+L S E+  +++ +  T     HG TY G+P+  AV+I AL++ KE  + E+   +  KF+  +     SPI+ ++RG GL+      ++K+
Sbjct:  254 RTGKMLCIEHSNVKPDVVILGKAISGGVYPVSAVLSSREI--MLNFEPGT-----HGSTYGGNPLGAAVSIAALEVVKEEKLTERAAVLGEKFRTAL-IECKSPIVQKVRGRGLLNAVVIDESKT 370          
The following BLAST results are available for this feature:
BLAST of CX287325 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
ARGD_SHIFL1.366e-1233.06Acetylornithine/succinyldiaminopimelate aminotrans... [more]
ARGD_ECOLI1.366e-1233.06Acetylornithine/succinyldiaminopimelate aminotrans... [more]
ARGD_ECO571.366e-1233.06Acetylornithine/succinyldiaminopimelate aminotrans... [more]
AGT2_MOUSE1.366e-1228.26Alanine--glyoxylate aminotransferase 2, mitochondr... [more]
OAT_GEOSW2.331e-1231.50Ornithine aminotransferase OS=Geobacillus sp. (str... [more]
BIOB_BACFR3.044e-1229.91Biotin synthase OS=Bacteroides fragilis GN=bioB PE... [more]
BIOB_BACFN3.044e-1229.91Biotin synthase OS=Bacteroides fragilis (strain AT... [more]
ARGD_SALTY3.044e-1232.23Acetylornithine/succinyldiaminopimelate aminotrans... [more]
ARGD_SALTI3.044e-1232.23Acetylornithine/succinyldiaminopimelate aminotrans... [more]
OAT_SCHPO3.976e-1232.00Probable ornithine aminotransferase OS=Schizosacch... [more]

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Properties
Property NameValue
Genbank descriptionC01008C10SK Veg1 Citrus clementina cDNA clone C01008C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287325 ID=CX287325; Name=CX287325; organism=Citrus clementina; type=EST; length=414bp
ATTTGGAAGACTTGGCACAATGTTTGGTTGTGACAAATACAGCATTAAAC
CAGATCTTGTGTCCTTCGCAAAGGCCCTTTCTTCAGCATATATGCCCATT
GGAGCTATTCTTGTGAGTCCCGAAGTTTCAGAAGTCATTCACTCTCAAAG
CAACACACTTGGTTCTTTCTCTCATGGATTTACTTATTCTGGGCATCCTG
TTTCCTGTGCCGTTGCCATCGAAGCGCTTAAGATTTACAAGGAAAGAAAT
ATTGTTGAGCAAGTAAATAAGATAGCGCCAAAGTTTCAAGATGGTGTAAA
AGCCTTTTCTGATAGTCCCATCATTGGAGAGATTCGGGGCACTGGTTTGA
TTCTTGGTACAGAGTTTGCAGACAACAAGTCTCCAAATGAACCGTTCCCT
CCTGAATGGGGGAT
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