CX287325

Overview
NameCX287325
Unique NameCX287325
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length414
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: PAT_SHIBS (Putrescine aminotransferase OS=Shigella boydii serotype 4 (strain Sb227) GN=patA PE=3 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 2.661e-16
Identity = 41/127 (32.28%), Postives = 69/127 (54.33%), Query Frame = 2
Query:    5 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS--PIIGEIRGTGLILGTEFADNK 379
            GR G MF C+  +++PD++  AKAL    MPIGA + + EV  V+         F H  T+ G+P++CA A+  + +  E+N++ Q  +      DG +  +     ++ E RG G+++  EF DN+
Sbjct:  278 GRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFD-----NPFLHTTTFGGNPLACAAALATINVLLEQNLLAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDNE 399          
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: PAT_SHISS (Putrescine aminotransferase OS=Shigella sonnei (strain Ss046) GN=patA PE=3 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 4.538e-16
Identity = 41/127 (32.28%), Postives = 69/127 (54.33%), Query Frame = 2
Query:    5 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS--PIIGEIRGTGLILGTEFADNK 379
            GR G MF C+  +++PD++  AKAL    MPIGA + + EV  V+         F H  T+ G+P++CA A+  + +  E+N+  Q ++      DG +  +     ++ E RG G+++  EF DN+
Sbjct:  278 GRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFD-----NPFLHTTTFGGNPLACAAALATINVLLEQNLPAQADQKGDMLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDNE 399          
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: PAT_SHIFL (Putrescine aminotransferase OS=Shigella flexneri GN=patA PE=3 SV=5)

HSP 1 Score: 82.8037 bits (203), Expect = 5.927e-16
Identity = 41/127 (32.28%), Postives = 68/127 (53.54%), Query Frame = 2
Query:    5 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS--PIIGEIRGTGLILGTEFADNK 379
            GR G MF C+  +++PD++  AKAL    MPIGA + + EV  V+         F H  T+ G+P++CA A+  + +  E+N+  Q  +      DG +  +     ++ E RG G+++  EF DN+
Sbjct:  278 GRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFD-----NPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDNE 399          
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: PAT_SHIF8 (Putrescine aminotransferase OS=Shigella flexneri serotype 5b (strain 8401) GN=patA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.927e-16
Identity = 41/127 (32.28%), Postives = 68/127 (53.54%), Query Frame = 2
Query:    5 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS--PIIGEIRGTGLILGTEFADNK 379
            GR G MF C+  +++PD++  AKAL    MPIGA + + EV  V+         F H  T+ G+P++CA A+  + +  E+N+  Q  +      DG +  +     ++ E RG G+++  EF DN+
Sbjct:  278 GRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFD-----NPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDNE 399          
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: PAT_SALTI (Putrescine aminotransferase OS=Salmonella typhi GN=patA PE=3 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 5.927e-16
Identity = 41/128 (32.03%), Postives = 69/128 (53.91%), Query Frame = 2
Query:    5 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS--PIIGEIRGTGLILGTEFADNKS 382
            GR G MF C+  +++PD++  AKAL    MPIGA + + EV  V+         F H  T+ G+P++CA A+  + +  E+N+  Q  +      DG +  +     ++ E RG G+++  EF DN++
Sbjct:  278 GRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFD-----NPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDTLLDGFRQLAREYPNLVHEARGKGMLMAIEFVDNET 400          
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: PAT_SALHS (Putrescine aminotransferase OS=Salmonella heidelberg (strain SL476) GN=patA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.927e-16
Identity = 41/128 (32.03%), Postives = 69/128 (53.91%), Query Frame = 2
Query:    5 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS--PIIGEIRGTGLILGTEFADNKS 382
            GR G MF C+  +++PD++  AKAL    MPIGA + + EV  V+         F H  T+ G+P++CA A+  + +  E+N+  Q  +      DG +  +     ++ E RG G+++  EF DN++
Sbjct:  278 GRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFD-----NPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDTLLDGFRQLAREYPNLVHEARGKGMLMAIEFVDNET 400          
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: PAT_ESCF3 (Putrescine aminotransferase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=patA PE=3 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 5.927e-16
Identity = 41/127 (32.28%), Postives = 68/127 (53.54%), Query Frame = 2
Query:    5 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS--PIIGEIRGTGLILGTEFADNK 379
            GR G MF C+  +++PD++  AKAL    MPIGA + + EV  V+         F H  T+ G+P++CA A+  + +  E+N+  Q  +      DG +  +     ++ E RG G+++  EF DN+
Sbjct:  278 GRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFD-----NPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDNE 399          
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: PAT_ECOUT (Putrescine aminotransferase OS=Escherichia coli (strain UTI89 / UPEC) GN=patA PE=3 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 5.927e-16
Identity = 41/127 (32.28%), Postives = 68/127 (53.54%), Query Frame = 2
Query:    5 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS--PIIGEIRGTGLILGTEFADNK 379
            GR G MF C+  +++PD++  AKAL    MPIGA + + EV  V+         F H  T+ G+P++CA A+  + +  E+N+  Q  +      DG +  +     ++ E RG G+++  EF DN+
Sbjct:  278 GRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFD-----NPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDNE 399          
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: PAT_ECOSM (Putrescine aminotransferase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=patA PE=3 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 5.927e-16
Identity = 41/127 (32.28%), Postives = 68/127 (53.54%), Query Frame = 2
Query:    5 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS--PIIGEIRGTGLILGTEFADNK 379
            GR G MF C+  +++PD++  AKAL    MPIGA + + EV  V+         F H  T+ G+P++CA A+  + +  E+N+  Q  +      DG +  +     ++ E RG G+++  EF DN+
Sbjct:  278 GRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFD-----NPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDNE 399          
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: PAT_ECOSE (Putrescine aminotransferase OS=Escherichia coli (strain SE11) GN=patA PE=3 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 5.927e-16
Identity = 41/127 (32.28%), Postives = 68/127 (53.54%), Query Frame = 2
Query:    5 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS--PIIGEIRGTGLILGTEFADNK 379
            GR G MF C+  +++PD++  AKAL    MPIGA + + EV  V+         F H  T+ G+P++CA A+  + +  E+N+  Q  +      DG +  +     ++ E RG G+++  EF DN+
Sbjct:  278 GRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFD-----NPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDNE 399          
The following BLAST results are available for this feature:
BLAST of CX287325 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
PAT_SHIBS2.661e-1632.28Putrescine aminotransferase OS=Shigella boydii ser... [more]
PAT_SHISS4.538e-1632.28Putrescine aminotransferase OS=Shigella sonnei (st... [more]
PAT_SHIFL5.927e-1632.28Putrescine aminotransferase OS=Shigella flexneri G... [more]
PAT_SHIF85.927e-1632.28Putrescine aminotransferase OS=Shigella flexneri s... [more]
PAT_SALTI5.927e-1632.03Putrescine aminotransferase OS=Salmonella typhi GN... [more]
PAT_SALHS5.927e-1632.03Putrescine aminotransferase OS=Salmonella heidelbe... [more]
PAT_ESCF35.927e-1632.28Putrescine aminotransferase OS=Escherichia ferguso... [more]
PAT_ECOUT5.927e-1632.28Putrescine aminotransferase OS=Escherichia coli (s... [more]
PAT_ECOSM5.927e-1632.28Putrescine aminotransferase OS=Escherichia coli (s... [more]
PAT_ECOSE5.927e-1632.28Putrescine aminotransferase OS=Escherichia coli (s... [more]

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Properties
Property NameValue
Genbank descriptionC01008C10SK Veg1 Citrus clementina cDNA clone C01008C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287325 ID=CX287325; Name=CX287325; organism=Citrus clementina; type=EST; length=414bp
ATTTGGAAGACTTGGCACAATGTTTGGTTGTGACAAATACAGCATTAAAC
CAGATCTTGTGTCCTTCGCAAAGGCCCTTTCTTCAGCATATATGCCCATT
GGAGCTATTCTTGTGAGTCCCGAAGTTTCAGAAGTCATTCACTCTCAAAG
CAACACACTTGGTTCTTTCTCTCATGGATTTACTTATTCTGGGCATCCTG
TTTCCTGTGCCGTTGCCATCGAAGCGCTTAAGATTTACAAGGAAAGAAAT
ATTGTTGAGCAAGTAAATAAGATAGCGCCAAAGTTTCAAGATGGTGTAAA
AGCCTTTTCTGATAGTCCCATCATTGGAGAGATTCGGGGCACTGGTTTGA
TTCTTGGTACAGAGTTTGCAGACAACAAGTCTCCAAATGAACCGTTCCCT
CCTGAATGGGGGAT
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