CX287325

Overview
NameCX287325
Unique NameCX287325
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length414
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: BIOB_BACTN (Biotin synthase OS=Bacteroides thetaiotaomicron GN=bioB PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 3.976e-12
Identity = 33/117 (28.21%), Postives = 66/117 (56.41%), Query Frame = 2
Query:    2 FGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLI 352
            FGR G +F  +   ++PD++   KAL+  YM + A+L S ++++ I + +    +F HG T+ G+P++CAVA  ++++  +    E V +I  + ++ +      P + ++R  G I
Sbjct:  568 FGRTGKLFAWEHAGVEPDIMCIGKALTGGYMTLSAVLASNQIADTISNHAPK--AFMHGPTFMGNPLACAVACASVRLLLDSGWAENVKRIEAQLKEELAPARKFPQVADVRILGAI 682          
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: BIOA_SALTY (Adenosylmethionine-8-amino-7-oxononanoate aminotransferase OS=Salmonella typhimurium GN=bioA PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 3.976e-12
Identity = 38/117 (32.48%), Postives = 61/117 (52.14%), Query Frame = 2
Query:    2 FGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLI 352
            FGR G +F C+   I PD++   KAL+   M + A L + +V+E I   +   G F HG T+ G+P++CAVA   L + +     +QV  I  + +  +     SP + ++R  G I
Sbjct:  251 FGRTGKLFACEHAGIAPDILCLGKALTGGTMTLSATLTTRQVAETI--SNGEAGCFMHGPTFMGNPLACAVACANLTLLESGEWRQQVASIESQLRAELAPAQSSPWVADVRVLGAI 365          
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: ARGD_THET8 (Acetylornithine/acetyl-lysine aminotransferase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=argD PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.976e-12
Identity = 38/127 (29.92%), Postives = 70/127 (55.12%), Query Frame = 2
Query:    5 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSP 385
            GR G  F  + + I PD+++ AKAL    +P+GA ++  EV+        ++    HG T+ G+P++ A  + A++  +   + E+  ++ P F + ++A   SP I E+RG GL++G E  +  +P
Sbjct:  232 GRTGKRFAFEHFGIVPDILTLAKALGGG-VPLGAAVMREEVAR-------SMPKGGHGTTFGGNPLAMAAGVAAIRYLERTRLWERAAELGPWFMEKLRAI-PSPKIREVRGMGLMVGLELKEKAAP 349          
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: ARGD_ECOL6 (Acetylornithine/succinyldiaminopimelate aminotransferase OS=Escherichia coli O6 GN=argD PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 3.976e-12
Identity = 39/121 (32.23%), Postives = 62/121 (51.24%), Query Frame = 2
Query:    5 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS-PIIGEIRGTGLILGTE 364
            GR G +F    Y + PD+++ AKAL   + P+ A+L + E++   H  S       HG TY G+P++CAVA  A  I     ++E +      F D ++       +  +IRG GL++G E
Sbjct:  233 GRTGDLFAYMHYGVTPDILTSAKALGGGF-PVSAMLTTAEIASAFHPGS-------HGSTYGGNPLACAVAGAAFDIINTPEVLEGIQAKRQHFVDHLQKIDQQYDVFSDIRGMGLLIGAE 345          
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: ARGD_DEIRA (Acetylornithine/acetyl-lysine aminotransferase OS=Deinococcus radiodurans GN=argD PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 3.976e-12
Identity = 39/128 (30.47%), Postives = 66/128 (51.56%), Query Frame = 2
Query:    2 FGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSP 385
            F R G MF C+ + + PD ++ AKA++    P  A  +  EV++        + +  HG T+ G+P+S A  + +L+  K   + EQ  +      D ++A   SP I E+RG GL++G E  +  +P
Sbjct:  232 FCRTGKMFACEHFGVIPDGMTLAKAIAGG-TPTAAFAMMSEVAD-------RMPAGGHGTTFGGNPLSMAAGVASLRAMKREGLAEQAREKGAYMMDKLRAI-QSPKIREVRGLGLMIGVELKEKSAP 350          
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: AGT2_RAT (Alanine--glyoxylate aminotransferase 2, mitochondrial OS=Rattus norvegicus GN=Agxt2 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 3.976e-12
Identity = 41/139 (29.50%), Postives = 74/139 (53.24%), Query Frame = 2
Query:    2 FGRLGTMF-GCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGF-TYSGHPVSCAVAIEALKIYKERNIVEQVNKIAP----KFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFP 400
            FGRLG+ F G   +   PD+V+ AK + + + P+ A++ +PE++       ++L    H F T+ G P++CA+    L++ +E N+     ++      KF    K   +  I+G++RG GL++G E   +K   +P P
Sbjct:  324 FGRLGSHFWGFQTHDTMPDIVTMAKGIGNGF-PMAAVVTTPEIA-------SSLAKHLHHFSTFGGSPLACAIGSAVLEVIEEENLQRNSQEVGTYMLLKF---AKLRDEFDIVGDVRGKGLMVGIEMVQDKISRQPLP 451          
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: ARGD_XANCP (Acetylornithine aminotransferase OS=Xanthomonas campestris pv. campestris GN=argD PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.192e-12
Identity = 43/123 (34.96%), Postives = 70/123 (56.91%), Query Frame = 2
Query:    5 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFA 370
            GR G++F   +  + PD+V+ AKAL   + PIGA+L  P+V+E       T+   +HG T+ G+P++ AVA  AL+      I E V + +   + G++A  ++  +  +IRG GL+LG   A
Sbjct:  234 GRTGSLFAHWQEQVTPDIVTLAKALGGGF-PIGAMLAGPKVAE-------TMQFGAHGTTFGGNPLAAAVARVALRKLASPQIAENVARQSAALRAGLEALNAEFGVFAQIRGRGLMLGAVLA 348          
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: ARGD_SULSO (Acetylornithine/acetyl-lysine aminotransferase OS=Sulfolobus solfataricus GN=argD PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 5.192e-12
Identity = 42/128 (32.81%), Postives = 63/128 (49.22%), Query Frame = 2
Query:    2 FGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVK-AFSDSPIIGEIRGTGLILGTEFADNKS 382
            FGR G ++    + IKPD+++  KA+   + P+ A+ +   +SE I           HG TY G+P++ A    A K+ K   I EQ  K    F   +K    D  I+ EIRG GL++G +   N S
Sbjct:  214 FGRTGKIWAYQHFDIKPDILTAGKAIGGGF-PVSAVFLPNWISEKIEEGD-------HGSTYGGNPLAAAAVTAACKVAKSEKIAEQAQKKGELFMRILKEKLEDFKIVREIRGLGLMIGIDLKVNPS 333          
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: ARGD_METJA (Acetylornithine aminotransferase OS=Methanocaldococcus jannaschii GN=argD PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.781e-12
Identity = 37/128 (28.91%), Postives = 73/128 (57.03%), Query Frame = 2
Query:    5 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKI----YKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADN 376
            GR G MF  + Y ++PD+++ AKAL    +PIGA+++  E+++        L    HG T+ G+P++C+ A+ ++++     K+  ++E+      K ++ ++ ++    I E+RG GL++G E   N
Sbjct:  230 GRTGRMFAFEHYGVEPDILTLAKALGGG-VPIGAVVLKEEIAK-------ALSYGDHGTTFGGNPLACSAALASVEVIEELIKDDKVIEKGKYFIRKLENLIEKYN---FIKEVRGLGLMIGAELEFN 346          
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: OAT2_STAS1 (Ornithine aminotransferase 2 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=rocD2 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.857e-12
Identity = 42/127 (33.07%), Postives = 66/127 (51.97%), Query Frame = 2
Query:    5 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSP 385
            GR G +F  D  ++KPD+    KAL    +PI  +L   EV  V      T G  SHG T+ G+P++CAV+  AL +  + ++  +  ++   F+  ++   D P I E+RG GL +G E  +   P
Sbjct:  233 GRSGKLFATDWDNVKPDVYILGKALGGGVLPISVVLADEEVLGVF-----TPG--SHGSTFGGNPLACAVSNAALDVIIDEDLPGRSLELGDYFKSELEKI-DHPAIKEVRGRGLFIGIELNEAARP 351          
The following BLAST results are available for this feature:
BLAST of CX287325 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
BIOB_BACTN3.976e-1228.21Biotin synthase OS=Bacteroides thetaiotaomicron GN... [more]
BIOA_SALTY3.976e-1232.48Adenosylmethionine-8-amino-7-oxononanoate aminotra... [more]
ARGD_THET83.976e-1229.92Acetylornithine/acetyl-lysine aminotransferase OS=... [more]
ARGD_ECOL63.976e-1232.23Acetylornithine/succinyldiaminopimelate aminotrans... [more]
ARGD_DEIRA3.976e-1230.47Acetylornithine/acetyl-lysine aminotransferase OS=... [more]
AGT2_RAT3.976e-1229.50Alanine--glyoxylate aminotransferase 2, mitochondr... [more]
ARGD_XANCP5.192e-1234.96Acetylornithine aminotransferase OS=Xanthomonas ca... [more]
ARGD_SULSO5.192e-1232.81Acetylornithine/acetyl-lysine aminotransferase OS=... [more]
ARGD_METJA6.781e-1228.91Acetylornithine aminotransferase OS=Methanocaldoco... [more]
OAT2_STAS18.857e-1233.07Ornithine aminotransferase 2 OS=Staphylococcus sap... [more]

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Properties
Property NameValue
Genbank descriptionC01008C10SK Veg1 Citrus clementina cDNA clone C01008C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287325 ID=CX287325; Name=CX287325; organism=Citrus clementina; type=EST; length=414bp
ATTTGGAAGACTTGGCACAATGTTTGGTTGTGACAAATACAGCATTAAAC
CAGATCTTGTGTCCTTCGCAAAGGCCCTTTCTTCAGCATATATGCCCATT
GGAGCTATTCTTGTGAGTCCCGAAGTTTCAGAAGTCATTCACTCTCAAAG
CAACACACTTGGTTCTTTCTCTCATGGATTTACTTATTCTGGGCATCCTG
TTTCCTGTGCCGTTGCCATCGAAGCGCTTAAGATTTACAAGGAAAGAAAT
ATTGTTGAGCAAGTAAATAAGATAGCGCCAAAGTTTCAAGATGGTGTAAA
AGCCTTTTCTGATAGTCCCATCATTGGAGAGATTCGGGGCACTGGTTTGA
TTCTTGGTACAGAGTTTGCAGACAACAAGTCTCCAAATGAACCGTTCCCT
CCTGAATGGGGGAT
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