CX287325

Overview
NameCX287325
Unique NameCX287325
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length414
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: ARGD_THEMA (Acetylornithine aminotransferase OS=Thermotoga maritima GN=argD PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.857e-12
Identity = 38/133 (28.57%), Postives = 70/133 (52.63%), Query Frame = 2
Query:    5 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQV----NKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNE 391
            GR G +F   KY + PD+++ AK L    +PIGA++V+         ++N L    HG T+ G+P++C   +  +K   +   +E+V    N +  K Q+  + +    ++ ++RG GL++G +F +  S  E
Sbjct:  218 GRTGKLFAYQKYGVVPDVLTTAKGLGGG-VPIGAVIVN--------ERANVLEPGDHGTTFGGNPLACRAGVTVIKELTKEGFLEEVEEKGNYLMKKLQEMKEEYD---VVADVRGMGLMIGIQFREEVSNRE 338          
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: ARGD_PASMU (Acetylornithine aminotransferase OS=Pasteurella multocida GN=argD PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.857e-12
Identity = 37/124 (29.84%), Postives = 70/124 (56.45%), Query Frame = 2
Query:    5 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS-PIIGEIRGTGLILGTEFAD 373
            GR G ++   KY + PD+++ AKAL + + PIGA+L + E+++       +     HG T+ G+P++CAVA + + I      ++++ + + KF   ++  +    +  EIRG GL++G E  +
Sbjct:  229 GRTGYLYAYMKYEVVPDILTSAKALGNGF-PIGAMLTTHEIAK-------SFAPGVHGTTFGGNPLACAVAEKVIDIISAPPFLQKIQRTSEKFMQKLQEINQQCGLFKEIRGEGLLIGAELIE 344          
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: ARGD_MYCLE (Acetylornithine aminotransferase OS=Mycobacterium leprae GN=argD PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.857e-12
Identity = 41/118 (34.75%), Postives = 65/118 (55.08%), Query Frame = 2
Query:    5 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILG 358
            GR G  F     SI PD+V+ AK L    +PIGA L +   +E++     TLG   HG T+ G+PV  A A+  L++   + +V +   +    + G+++ S  P+I ++RG GL+LG
Sbjct:  231 GRTGAFFAHQHDSITPDVVTLAKGLGGG-LPIGAFLATGPAAELL-----TLGL--HGSTFGGNPVCTAAALAVLRVLATQGLVRRAEVLGDSMRIGIESLS-HPLIDQVRGRGLLLG 339          
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: ARGD_METMA (Acetylornithine aminotransferase OS=Methanosarcina mazei GN=argD PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.857e-12
Identity = 37/121 (30.58%), Postives = 66/121 (54.55%), Query Frame = 2
Query:    2 FGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTE 364
            FGR GT F  +++ ++PD++S AKA+   + P+GAI     +S          G   H  T+ G P++CA A+ +++  KE  ++E+  ++   F   +   +   I+ E+RG GL++G E
Sbjct:  236 FGRTGTWFCKEQFGVEPDIMSMAKAIGGGF-PMGAIAARSGLS---------FGRGQHASTFGGGPLACAAALASIQAIKEEKLLERSKEMGAYFTKKLSGMARDDIV-EVRGKGLMIGVE 345          
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: ARGD_LEPIN (Acetylornithine aminotransferase OS=Leptospira interrogans GN=argD PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 8.857e-12
Identity = 44/131 (33.59%), Postives = 71/131 (54.20%), Query Frame = 2
Query:    5 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS-PIIGEIRGTGLILGTEFADNKSPNEP 394
            GR GT+F  +     PD ++ AK L S + PIGA++V  +  ++      T GS  HG T+ G+ ++ AVA E ++I + R I+  VN  +      ++   +  P+I E+RG GL +G E    K P++P
Sbjct:  240 GRTGTLFAFETMGFSPDAMTLAKGLGSGF-PIGALIVGEKYQDLF-----TQGS--HGSTFGGNHLAAAVAYETIRIIQTREILNNVNICSDIAFTRLREMQEKYPVISEVRGKGLHIGLEL---KVPSKP 359          
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: ARGD_LEPIC (Acetylornithine aminotransferase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=argD PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.857e-12
Identity = 44/131 (33.59%), Postives = 71/131 (54.20%), Query Frame = 2
Query:    5 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS-PIIGEIRGTGLILGTEFADNKSPNEP 394
            GR GT+F  +     PD ++ AK L S + PIGA++V  +  ++      T GS  HG T+ G+ ++ AVA E ++I + R I+  VN  +      ++   +  P+I E+RG GL +G E    K P++P
Sbjct:  240 GRTGTLFAFETMGFSPDAMTLAKGLGSGF-PIGALIVGEKYQDLF-----TQGS--HGSTFGGNHLAAAVAYETIRIIQTREILNNVNICSDIAFTRLREMQEKYPVISEVRGKGLHIGLEL---KVPSKP 359          
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: ARGD_BUCAI (Acetylornithine/succinyldiaminopimelate aminotransferase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=argD PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.857e-12
Identity = 43/129 (33.33%), Postives = 67/129 (51.94%), Query Frame = 2
Query:    5 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS-PIIGEIRGTGLILGTEFADNKSPN 388
            GR G +F  + Y+I PD+++ AK+L   + PI A+L + EV+ VI           HG TY G+P++CAVA   + I   + ++  V K + K    +   +    +  EIRG GL++G     N S N
Sbjct:  233 GRTGKLFYYEYYAITPDILTIAKSLGGGF-PISAMLTTNEVASVI-------APGIHGTTYGGNPLACAVAESVIDIINTKKVLSGVEKKSKKIISELNIINKRFKLFTEIRGRGLLIGIVLKPNVSRN 353          
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: ARGD_THET2 (Acetylornithine/acetyl-lysine aminotransferase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=argD PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.157e-11
Identity = 37/127 (29.13%), Postives = 69/127 (54.33%), Query Frame = 2
Query:    5 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSP 385
            GR G  F  + + I PD+++ AKAL    +P+G  ++  EV+        ++    HG T+ G+P++ A  + A++  +   + E+  ++ P F + ++A   SP I E+RG GL++G E  +  +P
Sbjct:  232 GRTGKRFAFEHFGIVPDILTLAKALGGG-VPLGVAVMREEVAR-------SMPKGGHGTTFGGNPLAMAAGVAAIRYLERTRLWERAAELGPWFMEKLRAI-PSPKIREVRGMGLMVGLELKEKAAP 349          
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: YKAB_BACPF (Uncharacterized aminotransferase in katA 3'region OS=Bacillus pseudofirmus PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.511e-11
Identity = 36/125 (28.80%), Postives = 67/125 (53.60%), Query Frame = 2
Query:    2 FGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS-PIIGEIRGTGLILGTEFAD 373
            FGR G  F    + + PD+++ AK ++S  +P+ A + +  +      Q   LGS  HG T+ G+P++C+ A+  L + KE N+++   ++    ++ +    +   +IG IR  GL++G E  D
Sbjct:  257 FGRTGEWFAAQTFGVTPDIMAIAKGIASG-LPLSATVANHTLM-----QQWPLGS--HGTTFGGNPIACSAALATLDVLKEENLLDNAREVGAYARERLNLLKEKYEMIGSIRSVGLMIGIEIID 373          
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: ARGD_YERPE (Acetylornithine/succinyldiaminopimelate aminotransferase OS=Yersinia pestis GN=argD PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 1.511e-11
Identity = 40/121 (33.06%), Postives = 68/121 (56.20%), Query Frame = 2
Query:    5 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTE 364
            GR G +F    Y + PD+++ AKAL   + PI A+L + E++ V+     T+G+  HG TY G+P++CAVA  AL +     ++  + +    F   +++  S   +  +IRG GL++G E
Sbjct:  232 GRSGKLFSYMHYGVTPDILTTAKALGGGF-PISAMLTTEEIASVM-----TVGT--HGTTYGGNPLACAVAEAALDVINTPEVLNGIEQRHGLFVQALQSINSKYDVFSDIRGMGLLIGAE 344          
The following BLAST results are available for this feature:
BLAST of CX287325 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
ARGD_THEMA8.857e-1228.57Acetylornithine aminotransferase OS=Thermotoga mar... [more]
ARGD_PASMU8.857e-1229.84Acetylornithine aminotransferase OS=Pasteurella mu... [more]
ARGD_MYCLE8.857e-1234.75Acetylornithine aminotransferase OS=Mycobacterium ... [more]
ARGD_METMA8.857e-1230.58Acetylornithine aminotransferase OS=Methanosarcina... [more]
ARGD_LEPIN8.857e-1233.59Acetylornithine aminotransferase OS=Leptospira int... [more]
ARGD_LEPIC8.857e-1233.59Acetylornithine aminotransferase OS=Leptospira int... [more]
ARGD_BUCAI8.857e-1233.33Acetylornithine/succinyldiaminopimelate aminotrans... [more]
ARGD_THET21.157e-1129.13Acetylornithine/acetyl-lysine aminotransferase OS=... [more]
YKAB_BACPF1.511e-1128.80Uncharacterized aminotransferase in katA 3'region ... [more]
ARGD_YERPE1.511e-1133.06Acetylornithine/succinyldiaminopimelate aminotrans... [more]

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Properties
Property NameValue
Genbank descriptionC01008C10SK Veg1 Citrus clementina cDNA clone C01008C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287325 ID=CX287325; Name=CX287325; organism=Citrus clementina; type=EST; length=414bp
ATTTGGAAGACTTGGCACAATGTTTGGTTGTGACAAATACAGCATTAAAC
CAGATCTTGTGTCCTTCGCAAAGGCCCTTTCTTCAGCATATATGCCCATT
GGAGCTATTCTTGTGAGTCCCGAAGTTTCAGAAGTCATTCACTCTCAAAG
CAACACACTTGGTTCTTTCTCTCATGGATTTACTTATTCTGGGCATCCTG
TTTCCTGTGCCGTTGCCATCGAAGCGCTTAAGATTTACAAGGAAAGAAAT
ATTGTTGAGCAAGTAAATAAGATAGCGCCAAAGTTTCAAGATGGTGTAAA
AGCCTTTTCTGATAGTCCCATCATTGGAGAGATTCGGGGCACTGGTTTGA
TTCTTGGTACAGAGTTTGCAGACAACAAGTCTCCAAATGAACCGTTCCCT
CCTGAATGGGGGAT
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