CX287325

Overview
NameCX287325
Unique NameCX287325
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length414
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: ARGD_XANAC (Acetylornithine aminotransferase OS=Xanthomonas axonopodis pv. citri GN=argD PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.511e-11
Identity = 42/123 (34.15%), Postives = 70/123 (56.91%), Query Frame = 2
Query:    5 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEFA 370
            GR GT+F   +  + PD+V+ AKAL   + PIGA+L  P+V++       T+   +HG T+ G+P++ AVA  AL+      I + V + +   + G++A  ++  +  +IRG GL+LG   A
Sbjct:  234 GRTGTLFAHWQEQVTPDIVTLAKALGGGF-PIGAMLAGPKVAQ-------TMQFGAHGTTFGGNPLAAAVARVALRKLASPQIADNVVRQSAALRAGLEALNAEFGLFAQIRGRGLMLGAVLA 348          
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: OAT1_STAS1 (Ornithine aminotransferase 1 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=rocD1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.973e-11
Identity = 38/120 (31.67%), Postives = 66/120 (55.00%), Query Frame = 2
Query:    5 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTE 364
            GR G MF  +  + +PD+    K+L     PI A+L + +V  V+     T G+  HG T+ G+P++CAV++ AL +  E ++V+    +  +    ++   +S +I E+RG GL +G E
Sbjct:  230 GRTGKMFAMEWENTEPDIYLLGKSLGGGLYPISAVLANQDVMSVL-----TPGT--HGSTFGGNPLACAVSMAALDVLNEEHLVQNALDLGDRLLKHLQQI-ESELIVEVRGRGLFIGIE 341          
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: BIOA_HAEIN (Adenosylmethionine-8-amino-7-oxononanoate aminotransferase OS=Haemophilus influenzae GN=bioA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.973e-11
Identity = 32/117 (27.35%), Postives = 61/117 (52.14%), Query Frame = 2
Query:    2 FGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLI 352
            FGR G +F  +   I PD++   KAL+  Y+ + A + + E+++ I   S     F HG T+  +P++CA+A E++++  E    + + +I    +  +   S+   + E+R  G I
Sbjct:  254 FGRTGKLFAAEHAGISPDIMCIGKALTGGYLTLSASITTTEIAQTI--CSGEAKCFMHGPTFMANPLACAIAAESIRLLLESPWQQNIQRIESSLKQQLSPLSEKDYVKEVRALGAI 368          
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: ARGD_METTH (Acetylornithine aminotransferase OS=Methanobacterium thermoautotrophicum GN=argD PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.973e-11
Identity = 37/122 (30.33%), Postives = 61/122 (50.00%), Query Frame = 2
Query:    2 FGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVK-AFSDSPIIGEIRGTGLILGTE 364
            FGR G MF    + ++PD+ + AKA+   Y PIGA+L +  V+              HG T+ G+P  CA AI  +++  +  + E+  K+   F   ++        + +IRG GL++G E
Sbjct:  223 FGRTGAMFASQLFGVEPDITTVAKAMGGGY-PIGAVLANERVAMAFEPG-------DHGSTFGGNPWGCAAAIATIEVLMDEKLPERAAKMGSYFLGRLRQVLHGCDAVRDIRGVGLMIGIE 336          
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: OAT_STAES (Ornithine aminotransferase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=rocD PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.577e-11
Identity = 41/127 (32.28%), Postives = 66/127 (51.97%), Query Frame = 2
Query:    5 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSP 385
            GR G +F  D   +KPD+    KAL     PI  +L   EV +V      T G  SHG T+ G+P++ AV+I A+ +  + ++  +  ++   F+  +K   + P I E+RG GL +G E  ++  P
Sbjct:  233 GRSGKLFATDWDHVKPDVYILGKALGGGVFPISVVLADNEVLDVF-----TPG--SHGSTFGGNPLASAVSIAAIDVIIDEDLPGRSLELGEYFKSELKKI-EHPSIKEVRGRGLFIGIELHESARP 351          
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: OAT_STAEQ (Ornithine aminotransferase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=rocD PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.577e-11
Identity = 41/127 (32.28%), Postives = 66/127 (51.97%), Query Frame = 2
Query:    5 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSP 385
            GR G +F  D   +KPD+    KAL     PI  +L   EV +V      T G  SHG T+ G+P++ AV+I A+ +  + ++  +  ++   F+  +K   + P I E+RG GL +G E  ++  P
Sbjct:  233 GRSGKLFATDWDHVKPDVYILGKALGGGVFPISVVLADNEVLDVF-----TPG--SHGSTFGGNPLASAVSIAAIDVIIDEDLPGRSLELGEYFKSELKKI-EHPSIKEVRGRGLFIGIELHESARP 351          
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: BIOA_SERMA (Adenosylmethionine-8-amino-7-oxononanoate aminotransferase OS=Serratia marcescens GN=bioA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.577e-11
Identity = 34/91 (37.36%), Postives = 51/91 (56.04%), Query Frame = 2
Query:    2 FGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKI 274
            FGR G +F C+   + PD++   KAL+  YM + A L +  V+E I   +   G F HG T+ G+P++CAVA  +L +  E     QV+ I
Sbjct:  254 FGRTGKLFACEHAQVVPDILCLGKALTGGYMTLSATLTTRHVAETI--SNGAAGCFMHGPTFMGNPLACAVADASLALLAENRWQAQVSAI 342          
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: ARGD_METAC (Acetylornithine aminotransferase OS=Methanosarcina acetivorans GN=argD PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 2.577e-11
Identity = 36/121 (29.75%), Postives = 67/121 (55.37%), Query Frame = 2
Query:    2 FGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTE 364
            FGR GT F  +++ ++PD++S +KA+   + P+GAI          H+  N  G   H  T+ G P++CA A+ ++K+ +E  ++E+  ++   F   +       ++ E+RG GL++G E
Sbjct:  236 FGRTGTWFCKEQFGVEPDIMSMSKAIGGGF-PMGAI--------AAHNGIN-FGRGQHASTFGGGPLACAAALASVKVIREEKLLERSKEMGAYFMKKLAGMVRDDVV-EVRGKGLMIGVE 345          
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: ARGD_YARLI (Acetylornithine aminotransferase, mitochondrial OS=Yarrowia lipolytica GN=ARG8 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.366e-11
Identity = 41/128 (32.03%), Postives = 72/128 (56.25%), Query Frame = 2
Query:    5 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS--PIIGEIRGTGLILGTEFADNKS 382
            GR G ++  DK  + PD+++ AKAL + + PIGA +V+  V++ I      +G   HG TY G+P++  V    L     + +++ V K++ + +D V    +    +I E+RG GL+LG +F+ + S
Sbjct:  242 GRTGRLWAHDK--VHPDILTMAKALGNGF-PIGATMVTEAVADKI-----AIGD--HGTTYGGNPLASRVGHYVLSQVASKEVLDNVKKVSQQIRDAVAEVQEEFPELITEVRGDGLLLGIQFSKDPS 359          
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: ARUC_PSEAE (Succinylornithine transaminase/acetylornithine aminotransferase OS=Pseudomonas aeruginosa GN=aruC PE=1 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 4.396e-11
Identity = 41/124 (33.06%), Postives = 67/124 (54.03%), Query Frame = 2
Query:    5 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGV-KAFSDSPIIGEIRGTGLILGTEFAD 373
            GR+G +F    Y + PD++S AK+L   + PIGA+L + E+++        L   +HG TY G+P++ AVA  AL +     +++ V     +F+  + K   +  I  EIRG GL++G    D
Sbjct:  233 GRVGELFAYMHYGVVPDILSSAKSLGGGF-PIGAMLTTGEIAK-------HLSVGTHGTTYGGNPLASAVAEAALDVINTPEVLDGVKAKHERFKSRLQKIGQEYGIFDEIRGMGLLIGAALTD 348          
The following BLAST results are available for this feature:
BLAST of CX287325 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
ARGD_XANAC1.511e-1134.15Acetylornithine aminotransferase OS=Xanthomonas ax... [more]
OAT1_STAS11.973e-1131.67Ornithine aminotransferase 1 OS=Staphylococcus sap... [more]
BIOA_HAEIN1.973e-1127.35Adenosylmethionine-8-amino-7-oxononanoate aminotra... [more]
ARGD_METTH1.973e-1130.33Acetylornithine aminotransferase OS=Methanobacteri... [more]
OAT_STAES2.577e-1132.28Ornithine aminotransferase OS=Staphylococcus epide... [more]
OAT_STAEQ2.577e-1132.28Ornithine aminotransferase OS=Staphylococcus epide... [more]
BIOA_SERMA2.577e-1137.36Adenosylmethionine-8-amino-7-oxononanoate aminotra... [more]
ARGD_METAC2.577e-1129.75Acetylornithine aminotransferase OS=Methanosarcina... [more]
ARGD_YARLI3.366e-1132.03Acetylornithine aminotransferase, mitochondrial OS... [more]
ARUC_PSEAE4.396e-1133.06Succinylornithine transaminase/acetylornithine ami... [more]

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Properties
Property NameValue
Genbank descriptionC01008C10SK Veg1 Citrus clementina cDNA clone C01008C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287325 ID=CX287325; Name=CX287325; organism=Citrus clementina; type=EST; length=414bp
ATTTGGAAGACTTGGCACAATGTTTGGTTGTGACAAATACAGCATTAAAC
CAGATCTTGTGTCCTTCGCAAAGGCCCTTTCTTCAGCATATATGCCCATT
GGAGCTATTCTTGTGAGTCCCGAAGTTTCAGAAGTCATTCACTCTCAAAG
CAACACACTTGGTTCTTTCTCTCATGGATTTACTTATTCTGGGCATCCTG
TTTCCTGTGCCGTTGCCATCGAAGCGCTTAAGATTTACAAGGAAAGAAAT
ATTGTTGAGCAAGTAAATAAGATAGCGCCAAAGTTTCAAGATGGTGTAAA
AGCCTTTTCTGATAGTCCCATCATTGGAGAGATTCGGGGCACTGGTTTGA
TTCTTGGTACAGAGTTTGCAGACAACAAGTCTCCAAATGAACCGTTCCCT
CCTGAATGGGGGAT
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