CX287325

Overview
NameCX287325
Unique NameCX287325
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length414
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: ARGD_PHOLL (Acetylornithine/succinyldiaminopimelate aminotransferase OS=Photorhabdus luminescens subsp. laumondii GN=argD PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.498e-11
Identity = 45/132 (34.09%), Postives = 72/132 (54.55%), Query Frame = 2
Query:    5 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNI---VEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNE 391
            GR G +F    Y + PD+++ AKAL + + PI A+L +  ++ V+     T G+  HG TY G+P++CAVA  A  I     +   VE+ + +   F + +       I GEIRG GL++G E    K+P++
Sbjct:  232 GRTGKLFSYMHYDVTPDIITTAKALGNGF-PISAMLTTVNIASVM-----TPGA--HGTTYGGNPLACAVANVAFDIINTPAVLAGVEKRHNLMVNFLNDIN--QKYSIFGEIRGKGLLIGAEL---KAPHQ 350          
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: AGT2L_DROME (Alanine--glyoxylate aminotransferase 2-like OS=Drosophila melanogaster GN=CG8745 PE=1 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 7.498e-11
Identity = 37/143 (25.87%), Postives = 75/143 (52.45%), Query Frame = 2
Query:    2 FGRLGTMFGC-DKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERN-----------IVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEP 394
            FGR+G+ +   +  ++ PD+V  AK + + + P+GA++ +PE+++  H+        ++  TY G+PVSCA+A   +++ +E             ++E+ N++  +F+           IG++RG GL +G E   ++    P
Sbjct:  267 FGRVGSHYWAFETQNVIPDIVCVAKPMGNGH-PVGAVVTTPEIAQAFHATG-----VAYFNTYGGNPVSCAIANAVMRVIEEEGLQQKALVLGDYLLEECNRLKQEFE----------CIGDVRGAGLFVGIELVQDRKERIP 393          
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: AGT2L_CAEEL (Alanine--glyoxylate aminotransferase 2-like OS=Caenorhabditis elegans GN=T01B11.2 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.498e-11
Identity = 36/135 (26.67%), Postives = 70/135 (51.85%), Query Frame = 2
Query:    2 FGRLGTMFGCDKY---SIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS-PIIGEIRGTGLILGTEFADNKSPNEP 394
            FGR+G  +   +       PD+V+  K + + + P+ A+    E+++ +  +   +G F+   TY G+PV+CA  I  +K+ K+ N++E   ++  K +  ++        IG+IRG GL  G +   +++  EP
Sbjct:  281 FGRIGRKYWAHQLYDDGFLPDIVTMGKPMGNGF-PVSAVATRKEIADALGGE---VGYFN---TYGGNPVACAAVISVMKVVKDENLLEHSQQMGEKLEVALRDLQKKHECIGDIRGVGLFWGIDLVKDRNTREP 408          
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: ARGD_THETN (Acetylornithine aminotransferase OS=Thermoanaerobacter tengcongensis GN=argD PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.792e-11
Identity = 37/121 (30.58%), Postives = 62/121 (51.24%), Query Frame = 2
Query:    5 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS-PIIGEIRGTGLILGTE 364
            GR G +FG + Y + PD+++ AK L   + PIGAI+   + +              H  T+ G+P++CA  I  L    +   +E V+K    F++G++       ++ EIRG GL++G E
Sbjct:  225 GRTGKLFGYEHYGVVPDIMTLAKGLGGGF-PIGAIVAKEDKA--------VFKPGDHASTFGGNPLACAAGIAVLNEVTKDGFLEGVDKKGKYFREGLETLQKKHKVVKEIRGKGLMVGCE 336          
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: ARGD_STRAW (Acetylornithine aminotransferase OS=Streptomyces avermitilis GN=argD PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.792e-11
Identity = 36/128 (28.12%), Postives = 66/128 (51.56%), Query Frame = 2
Query:    5 GRLGTMFGCDKYS-IKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSP 385
            GR G  F    +  + PD+V+ AK L    +P+GA +     +E++           HG T+ G+P++CA  +  L+  +   ++E V   + K +DG+++    P+I  +RG+GL+LG    +  +P
Sbjct:  228 GRTGHWFEYQAHEGVLPDVVTLAKGLGGG-LPLGATVAFGRAAELLQPGH-------HGTTFGGNPIACAAGLAVLETIQAEGLLENVKSASEKLRDGIESLG-HPLIAHVRGSGLLLGIVLTEPLAP 346          
The following BLAST results are available for this feature:
BLAST of CX287325 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
ARGD_PHOLL7.498e-1134.09Acetylornithine/succinyldiaminopimelate aminotrans... [more]
AGT2L_DROME7.498e-1125.87Alanine--glyoxylate aminotransferase 2-like OS=Dro... [more]
AGT2L_CAEEL7.498e-1126.67Alanine--glyoxylate aminotransferase 2-like OS=Cae... [more]
ARGD_THETN9.792e-1130.58Acetylornithine aminotransferase OS=Thermoanaeroba... [more]
ARGD_STRAW9.792e-1128.13Acetylornithine aminotransferase OS=Streptomyces a... [more]

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Properties
Property NameValue
Genbank descriptionC01008C10SK Veg1 Citrus clementina cDNA clone C01008C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287325 ID=CX287325; Name=CX287325; organism=Citrus clementina; type=EST; length=414bp
ATTTGGAAGACTTGGCACAATGTTTGGTTGTGACAAATACAGCATTAAAC
CAGATCTTGTGTCCTTCGCAAAGGCCCTTTCTTCAGCATATATGCCCATT
GGAGCTATTCTTGTGAGTCCCGAAGTTTCAGAAGTCATTCACTCTCAAAG
CAACACACTTGGTTCTTTCTCTCATGGATTTACTTATTCTGGGCATCCTG
TTTCCTGTGCCGTTGCCATCGAAGCGCTTAAGATTTACAAGGAAAGAAAT
ATTGTTGAGCAAGTAAATAAGATAGCGCCAAAGTTTCAAGATGGTGTAAA
AGCCTTTTCTGATAGTCCCATCATTGGAGAGATTCGGGGCACTGGTTTGA
TTCTTGGTACAGAGTTTGCAGACAACAAGTCTCCAAATGAACCGTTCCCT
CCTGAATGGGGGAT
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