CX287325

Overview
NameCX287325
Unique NameCX287325
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length414
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: PAT_ECOLU (Putrescine aminotransferase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=patA PE=3 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 5.927e-16
Identity = 41/127 (32.28%), Postives = 68/127 (53.54%), Query Frame = 2 
Query:    5 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS--PIIGEIRGTGLILGTEFADNK 379
            GR G MF C+  +++PD++  AKAL    MPIGA + + EV  V+         F H  T+ G+P++CA A+  + +  E+N+  Q  +      DG +  +     ++ E RG G+++  EF DN+
Sbjct:  278 GRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFD-----NPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDNE 399
[Close]
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: PAT_ECOLI (Putrescine aminotransferase OS=Escherichia coli (strain K12) GN=patA PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 5.927e-16
Identity = 41/127 (32.28%), Postives = 68/127 (53.54%), Query Frame = 2 
Query:    5 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS--PIIGEIRGTGLILGTEFADNK 379
            GR G MF C+  +++PD++  AKAL    MPIGA + + EV  V+         F H  T+ G+P++CA A+  + +  E+N+  Q  +      DG +  +     ++ E RG G+++  EF DN+
Sbjct:  278 GRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFD-----NPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDNE 399
[Close]
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: PAT_ECOLC (Putrescine aminotransferase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=patA PE=3 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 5.927e-16
Identity = 41/127 (32.28%), Postives = 68/127 (53.54%), Query Frame = 2 
Query:    5 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS--PIIGEIRGTGLILGTEFADNK 379
            GR G MF C+  +++PD++  AKAL    MPIGA + + EV  V+         F H  T+ G+P++CA A+  + +  E+N+  Q  +      DG +  +     ++ E RG G+++  EF DN+
Sbjct:  278 GRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFD-----NPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDNE 399
[Close]
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: PAT_ECOL6 (Putrescine aminotransferase OS=Escherichia coli O6 GN=patA PE=3 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 5.927e-16
Identity = 41/127 (32.28%), Postives = 68/127 (53.54%), Query Frame = 2 
Query:    5 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS--PIIGEIRGTGLILGTEFADNK 379
            GR G MF C+  +++PD++  AKAL    MPIGA + + EV  V+         F H  T+ G+P++CA A+  + +  E+N+  Q  +      DG +  +     ++ E RG G+++  EF DN+
Sbjct:  278 GRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFD-----NPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDNE 399
[Close]
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: PAT_ECOL5 (Putrescine aminotransferase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=patA PE=3 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 5.927e-16
Identity = 41/127 (32.28%), Postives = 68/127 (53.54%), Query Frame = 2 
Query:    5 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS--PIIGEIRGTGLILGTEFADNK 379
            GR G MF C+  +++PD++  AKAL    MPIGA + + EV  V+         F H  T+ G+P++CA A+  + +  E+N+  Q  +      DG +  +     ++ E RG G+++  EF DN+
Sbjct:  278 GRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFD-----NPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDNE 399
[Close]
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: PAT_ECOK1 (Putrescine aminotransferase OS=Escherichia coli O1:K1 / APEC GN=patA PE=3 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 5.927e-16
Identity = 41/127 (32.28%), Postives = 68/127 (53.54%), Query Frame = 2 
Query:    5 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS--PIIGEIRGTGLILGTEFADNK 379
            GR G MF C+  +++PD++  AKAL    MPIGA + + EV  V+         F H  T+ G+P++CA A+  + +  E+N+  Q  +      DG +  +     ++ E RG G+++  EF DN+
Sbjct:  278 GRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFD-----NPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDNE 399
[Close]
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: PAT_ECOHS (Putrescine aminotransferase OS=Escherichia coli O9:H4 (strain HS) GN=patA PE=3 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 5.927e-16
Identity = 41/127 (32.28%), Postives = 68/127 (53.54%), Query Frame = 2 
Query:    5 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS--PIIGEIRGTGLILGTEFADNK 379
            GR G MF C+  +++PD++  AKAL    MPIGA + + EV  V+         F H  T+ G+P++CA A+  + +  E+N+  Q  +      DG +  +     ++ E RG G+++  EF DN+
Sbjct:  278 GRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFD-----NPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDNE 399
[Close]
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: PAT_ECODH (Putrescine aminotransferase OS=Escherichia coli (strain K12 / DH10B) GN=patA PE=3 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 5.927e-16
Identity = 41/127 (32.28%), Postives = 68/127 (53.54%), Query Frame = 2 
Query:    5 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS--PIIGEIRGTGLILGTEFADNK 379
            GR G MF C+  +++PD++  AKAL    MPIGA + + EV  V+         F H  T+ G+P++CA A+  + +  E+N+  Q  +      DG +  +     ++ E RG G+++  EF DN+
Sbjct:  278 GRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFD-----NPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDNE 399
[Close]
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: PAT_ECOBW (Putrescine aminotransferase OS=Escherichia coli (strain K12 / BW2952) GN=patA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.927e-16
Identity = 41/127 (32.28%), Postives = 68/127 (53.54%), Query Frame = 2 
Query:    5 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS--PIIGEIRGTGLILGTEFADNK 379
            GR G MF C+  +++PD++  AKAL    MPIGA + + EV  V+         F H  T+ G+P++CA A+  + +  E+N+  Q  +      DG +  +     ++ E RG G+++  EF DN+
Sbjct:  278 GRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFD-----NPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDNE 399
[Close]
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: PAT_ECO8A (Putrescine aminotransferase OS=Escherichia coli O8 (strain IAI1) GN=patA PE=3 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 5.927e-16
Identity = 41/127 (32.28%), Postives = 68/127 (53.54%), Query Frame = 2 
Query:    5 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS--PIIGEIRGTGLILGTEFADNK 379
            GR G MF C+  +++PD++  AKAL    MPIGA + + EV  V+         F H  T+ G+P++CA A+  + +  E+N+  Q  +      DG +  +     ++ E RG G+++  EF DN+
Sbjct:  278 GRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFD-----NPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDNE 399
The following BLAST results are available for this feature:
BLAST of CX287325 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
PAT_ECOLU5.927e-1632.28Putrescine aminotransferase OS=Escherichia coli O1... [more]
PAT_ECOLI5.927e-1632.28Putrescine aminotransferase OS=Escherichia coli (s... [more]
PAT_ECOLC5.927e-1632.28Putrescine aminotransferase OS=Escherichia coli (s... [more]
PAT_ECOL65.927e-1632.28Putrescine aminotransferase OS=Escherichia coli O6... [more]
PAT_ECOL55.927e-1632.28Putrescine aminotransferase OS=Escherichia coli O6... [more]
PAT_ECOK15.927e-1632.28Putrescine aminotransferase OS=Escherichia coli O1... [more]
PAT_ECOHS5.927e-1632.28Putrescine aminotransferase OS=Escherichia coli O9... [more]
PAT_ECODH5.927e-1632.28Putrescine aminotransferase OS=Escherichia coli (s... [more]
PAT_ECOBW5.927e-1632.28Putrescine aminotransferase OS=Escherichia coli (s... [more]
PAT_ECO8A5.927e-1632.28Putrescine aminotransferase OS=Escherichia coli O8... [more]

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Properties
Property NameValue
Genbank descriptionC01008C10SK Veg1 Citrus clementina cDNA clone C01008C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287325 ID=CX287325; Name=CX287325; organism=Citrus clementina; type=EST; length=414bp
ATTTGGAAGACTTGGCACAATGTTTGGTTGTGACAAATACAGCATTAAAC
CAGATCTTGTGTCCTTCGCAAAGGCCCTTTCTTCAGCATATATGCCCATT
GGAGCTATTCTTGTGAGTCCCGAAGTTTCAGAAGTCATTCACTCTCAAAG
CAACACACTTGGTTCTTTCTCTCATGGATTTACTTATTCTGGGCATCCTG
TTTCCTGTGCCGTTGCCATCGAAGCGCTTAAGATTTACAAGGAAAGAAAT
ATTGTTGAGCAAGTAAATAAGATAGCGCCAAAGTTTCAAGATGGTGTAAA
AGCCTTTTCTGATAGTCCCATCATTGGAGAGATTCGGGGCACTGGTTTGA
TTCTTGGTACAGAGTTTGCAGACAACAAGTCTCCAAATGAACCGTTCCCT
CCTGAATGGGGGAT
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