CX287325

Overview
NameCX287325
Unique NameCX287325
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length414
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: PAT_ECO81 (Putrescine aminotransferase OS=Escherichia coli O81 (strain ED1a) GN=patA PE=3 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 5.927e-16
Identity = 41/127 (32.28%), Postives = 68/127 (53.54%), Query Frame = 2 
Query:    5 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS--PIIGEIRGTGLILGTEFADNK 379
            GR G MF C+  +++PD++  AKAL    MPIGA + + EV  V+         F H  T+ G+P++CA A+  + +  E+N+  Q  +      DG +  +     ++ E RG G+++  EF DN+
Sbjct:  278 GRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFD-----NPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDNE 399
[Close]
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: PAT_ECO7I (Putrescine aminotransferase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=patA PE=3 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 5.927e-16
Identity = 41/127 (32.28%), Postives = 68/127 (53.54%), Query Frame = 2 
Query:    5 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS--PIIGEIRGTGLILGTEFADNK 379
            GR G MF C+  +++PD++  AKAL    MPIGA + + EV  V+         F H  T+ G+P++CA A+  + +  E+N+  Q  +      DG +  +     ++ E RG G+++  EF DN+
Sbjct:  278 GRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFD-----NPFLHTTTFGGNPLTCAAALATINVLLEQNLPAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDNE 399
[Close]
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: PAT_ECO5E (Putrescine aminotransferase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=patA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.927e-16
Identity = 41/127 (32.28%), Postives = 68/127 (53.54%), Query Frame = 2 
Query:    5 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS--PIIGEIRGTGLILGTEFADNK 379
            GR G MF C+  +++PD++  AKAL    MPIGA + + EV  V+         F H  T+ G+P++CA A+  + +  E+N+  Q  +      DG +  +     ++ E RG G+++  EF DN+
Sbjct:  278 GRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFD-----NPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDNE 399
[Close]
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: PAT_ECO57 (Putrescine aminotransferase OS=Escherichia coli O157:H7 GN=patA PE=3 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 5.927e-16
Identity = 41/127 (32.28%), Postives = 68/127 (53.54%), Query Frame = 2 
Query:    5 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS--PIIGEIRGTGLILGTEFADNK 379
            GR G MF C+  +++PD++  AKAL    MPIGA + + EV  V+         F H  T+ G+P++CA A+  + +  E+N+  Q  +      DG +  +     ++ E RG G+++  EF DN+
Sbjct:  278 GRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFD-----NPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDNE 399
[Close]
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: PAT_ECO55 (Putrescine aminotransferase OS=Escherichia coli (strain 55989 / EAEC) GN=patA PE=3 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 5.927e-16
Identity = 41/127 (32.28%), Postives = 68/127 (53.54%), Query Frame = 2 
Query:    5 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS--PIIGEIRGTGLILGTEFADNK 379
            GR G MF C+  +++PD++  AKAL    MPIGA + + EV  V+         F H  T+ G+P++CA A+  + +  E+N+  Q  +      DG +  +     ++ E RG G+++  EF DN+
Sbjct:  278 GRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFD-----NPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDNE 399
[Close]
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: PAT_ECO45 (Putrescine aminotransferase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=patA PE=3 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 5.927e-16
Identity = 41/127 (32.28%), Postives = 68/127 (53.54%), Query Frame = 2 
Query:    5 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS--PIIGEIRGTGLILGTEFADNK 379
            GR G MF C+  +++PD++  AKAL    MPIGA + + EV  V+         F H  T+ G+P++CA A+  + +  E+N+  Q  +      DG +  +     ++ E RG G+++  EF DN+
Sbjct:  278 GRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFD-----NPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDNE 399
[Close]
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: PAT_ECO27 (Putrescine aminotransferase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=patA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.927e-16
Identity = 41/127 (32.28%), Postives = 68/127 (53.54%), Query Frame = 2 
Query:    5 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS--PIIGEIRGTGLILGTEFADNK 379
            GR G MF C+  +++PD++  AKAL    MPIGA + + EV  V+         F H  T+ G+P++CA A+  + +  E+N+  Q  +      DG +  +     ++ E RG G+++  EF DN+
Sbjct:  278 GRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFD-----NPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDNE 399
[Close]
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: PAT_ECO24 (Putrescine aminotransferase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=patA PE=3 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 5.927e-16
Identity = 41/127 (32.28%), Postives = 68/127 (53.54%), Query Frame = 2 
Query:    5 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS--PIIGEIRGTGLILGTEFADNK 379
            GR G MF C+  +++PD++  AKAL    MPIGA + + EV  V+         F H  T+ G+P++CA A+  + +  E+N+  Q  +      DG +  +     ++ E RG G+++  EF DN+
Sbjct:  278 GRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFD-----NPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDNE 399
[Close]
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: PAT_KLEP7 (Putrescine aminotransferase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=patA PE=3 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 7.741e-16
Identity = 40/127 (31.50%), Postives = 68/127 (53.54%), Query Frame = 2 
Query:    5 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS--PIIGEIRGTGLILGTEFADNK 379
            GR G MF C+  +++PD++  AKAL    MPIGA + + EV  V+         F H  T+ G+P++CA A+  + +   +N+  Q  +      DG +  +     ++ E+RG G+++  EF DN+
Sbjct:  278 GRTGKMFACEHENVQPDILCLAKALGGGVMPIGATVATEEVFSVLFD-----NPFLHTTTFGGNPLACAAALATINVLLTQNLPAQAAQKGDMLLDGFRLLAQEYPDLVNEVRGKGMLMAIEFVDNE 399
[Close]
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: PAT_KLEP3 (Putrescine aminotransferase OS=Klebsiella pneumoniae (strain 342) GN=patA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.741e-16
Identity = 40/127 (31.50%), Postives = 68/127 (53.54%), Query Frame = 2 
Query:    5 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS--PIIGEIRGTGLILGTEFADNK 379
            GR G MF C+  +++PD++  AKAL    MPIGA + + EV  V+         F H  T+ G+P++CA A+  + +   +N+  Q  +      DG +  +     ++ E+RG G+++  EF DN+
Sbjct:  278 GRTGKMFACEHENVQPDILCLAKALGGGVMPIGATVATEEVFSVLFD-----NPFLHTTTFGGNPLACAAALATINVLLTQNLPAQAAQKGDMLLDGFRLLAQEYPDLVNEVRGKGMLMAIEFVDNE 399
The following BLAST results are available for this feature:
BLAST of CX287325 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
PAT_ECO815.927e-1632.28Putrescine aminotransferase OS=Escherichia coli O8... [more]
PAT_ECO7I5.927e-1632.28Putrescine aminotransferase OS=Escherichia coli O7... [more]
PAT_ECO5E5.927e-1632.28Putrescine aminotransferase OS=Escherichia coli O1... [more]
PAT_ECO575.927e-1632.28Putrescine aminotransferase OS=Escherichia coli O1... [more]
PAT_ECO555.927e-1632.28Putrescine aminotransferase OS=Escherichia coli (s... [more]
PAT_ECO455.927e-1632.28Putrescine aminotransferase OS=Escherichia coli O4... [more]
PAT_ECO275.927e-1632.28Putrescine aminotransferase OS=Escherichia coli O1... [more]
PAT_ECO245.927e-1632.28Putrescine aminotransferase OS=Escherichia coli O1... [more]
PAT_KLEP77.741e-1631.50Putrescine aminotransferase OS=Klebsiella pneumoni... [more]
PAT_KLEP37.741e-1631.50Putrescine aminotransferase OS=Klebsiella pneumoni... [more]

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Properties
Property NameValue
Genbank descriptionC01008C10SK Veg1 Citrus clementina cDNA clone C01008C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287325 ID=CX287325; Name=CX287325; organism=Citrus clementina; type=EST; length=414bp
ATTTGGAAGACTTGGCACAATGTTTGGTTGTGACAAATACAGCATTAAAC
CAGATCTTGTGTCCTTCGCAAAGGCCCTTTCTTCAGCATATATGCCCATT
GGAGCTATTCTTGTGAGTCCCGAAGTTTCAGAAGTCATTCACTCTCAAAG
CAACACACTTGGTTCTTTCTCTCATGGATTTACTTATTCTGGGCATCCTG
TTTCCTGTGCCGTTGCCATCGAAGCGCTTAAGATTTACAAGGAAAGAAAT
ATTGTTGAGCAAGTAAATAAGATAGCGCCAAAGTTTCAAGATGGTGTAAA
AGCCTTTTCTGATAGTCCCATCATTGGAGAGATTCGGGGCACTGGTTTGA
TTCTTGGTACAGAGTTTGCAGACAACAAGTCTCCAAATGAACCGTTCCCT
CCTGAATGGGGGAT
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