CX287332

Overview
NameCX287332
Unique NameCX287332
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length406
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7097 contig Ccv1_Contig7097:141..546. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287332 vs. ExPASy Swiss-Prot
Match: THIO_MYCBO (Thioredoxin OS=Mycobacterium bovis GN=trxA PE=3 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 3.873e-15
Identity = 33/76 (43.42%), Postives = 53/76 (69.74%), Query Frame = 1
Query:  178 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFK 405
            VTDA++ + VL S  PVLV+FWA WCGPC+M+ P+++E++ +    L   K++ D +P  A  + + SIPT+++FK
Sbjct:   12 VTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIPTLILFK 87          
BLAST of CX287332 vs. ExPASy Swiss-Prot
Match: TRXB_MYCLE (Bifunctional thioredoxin reductase/thioredoxin OS=Mycobacterium leprae GN=trxB/A PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.058e-15
Identity = 32/76 (42.11%), Postives = 55/76 (72.37%), Query Frame = 1
Query:  178 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFK 405
            VTDA++ + VL S  PVLV+FWA WCGPC+M+ P+++E++ +   +L   K++ D +P +A  + + SIPT+++F+
Sbjct:  354 VTDASFFADVLSSNKPVLVDFWATWCGPCKMVAPVLEEIASEQRNQLTVAKLDVDTNPEMAREFQVVSIPTMILFQ 429          
BLAST of CX287332 vs. ExPASy Swiss-Prot
Match: THIO_BUCAP (Thioredoxin OS=Buchnera aphidicola subsp. Schizaphis graminum GN=trxA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.472e-14
Identity = 31/75 (41.33%), Postives = 54/75 (72.00%), Query Frame = 1
Query:  178 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIF 402
            +TD  ++  VL+  S VLV+FWA WC PC+++ PI++E++++Y  K+K  K+N +++P+ A  Y IR IP +++F
Sbjct:    7 LTDQNFEKEVLEHKSFVLVDFWAEWCNPCKILAPILEEIAQEYFNKIKVGKLNIEKNPNTAPIYSIRGIPALLLF 81          
BLAST of CX287332 vs. ExPASy Swiss-Prot
Match: THIO_STAS1 (Thioredoxin OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=trxA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.510e-14
Identity = 30/59 (50.85%), Postives = 45/59 (76.27%), Query Frame = 1
Query:  229 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFK 405
            LV+FWA WCGPC+MI P+++EL+  Y GK    K++ DE+PS A ++ + SIPT+++FK
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAGDYDGKANILKLDVDENPSTAAKFEVMSIPTLIVFK 79          
BLAST of CX287332 vs. ExPASy Swiss-Prot
Match: THIO_STAHJ (Thioredoxin OS=Staphylococcus haemolyticus (strain JCSC1435) GN=trxA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.278e-14
Identity = 30/59 (50.85%), Postives = 45/59 (76.27%), Query Frame = 1
Query:  229 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFK 405
            LV+FWA WCGPC+MI P+++EL+  Y GK    K++ DE+PS A ++ + SIPT+++FK
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAGDYDGKADILKLDVDENPSTAAKFEVMSIPTLIVFK 79          
BLAST of CX287332 vs. ExPASy Swiss-Prot
Match: THIO1_CHLTE (Thioredoxin-1 OS=Chlorobium tepidum GN=trx1 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.303e-14
Identity = 29/71 (40.85%), Postives = 46/71 (64.79%), Query Frame = 1
Query:  190 TWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIF 402
            T   L+  S  PV ++FWA WCGPC+M+ P + +L+ ++ G+L   KVN D+ P  A R+ ++ IP +M+F
Sbjct:    4 TLDDLIRTSELPVFIDFWADWCGPCKMVAPSVKQLASEFKGRLIVVKVNVDQQPDAAARFQVQGIPALMLF 74          
BLAST of CX287332 vs. ExPASy Swiss-Prot
Match: THIO1_SYNY3 (Thioredoxin-like protein slr0233 OS=Synechocystis sp. (strain PCC 6803) GN=slr0233 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.538e-14
Identity = 30/73 (41.10%), Postives = 54/73 (73.97%), Query Frame = 1
Query:  187 ATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFK 405
            A +  ++  S  PVLV+F+A WCGPC+M+ PI++++      +++  K++TD+ P+IAT+Y I+S+PT+++FK
Sbjct:    8 ANFAEMLAGSPKPVLVDFYATWCGPCQMMAPILEQVGSHLRQQIQVVKIDTDKYPAIATQYQIQSLPTLVLFK 80          
BLAST of CX287332 vs. ExPASy Swiss-Prot
Match: THIO_MYCSM (Thioredoxin OS=Mycobacterium smegmatis GN=trxA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.246e-13
Identity = 34/79 (43.04%), Postives = 55/79 (69.62%), Query Frame = 1
Query:  175 AVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYK--VNTDESPSIATRYGIRSIPTVMIFK 405
            AVTD ++ + VL S  PVLV+FWA WCGPC+M+ P+++E++ +   +L   K  V+ D +P+ A  + + SIPT+++FK
Sbjct:    9 AVTDDSFSTDVLGSSKPVLVDFWATWCGPCKMVAPVLEEIAAEKGDQLTVAKIDVDVDANPATARDFQVVSIPTMILFK 87          
BLAST of CX287332 vs. ExPASy Swiss-Prot
Match: THIO_LISMO (Thioredoxin OS=Listeria monocytogenes GN=trxA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.734e-13
Identity = 33/79 (41.77%), Postives = 51/79 (64.56%), Query Frame = 1
Query:  169 VPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFK 405
            V  +TDAT++     S   VL +FWA WCGPCRM+ P+++E+ ++    LK  K++ DE+P     +G+ SIPT++I K
Sbjct:    2 VKEITDATFEQET--SEGLVLTDFWATWCGPCRMVAPVLEEIQEERGEALKIVKMDVDENPETPGSFGVMSIPTLLIKK 78          
BLAST of CX287332 vs. ExPASy Swiss-Prot
Match: THIO_LISIN (Thioredoxin OS=Listeria innocua GN=trxA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.734e-13
Identity = 33/79 (41.77%), Postives = 51/79 (64.56%), Query Frame = 1
Query:  169 VPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFK 405
            V  +TDAT++     S   VL +FWA WCGPCRM+ P+++E+ ++    LK  K++ DE+P     +G+ SIPT++I K
Sbjct:    2 VKEITDATFEQET--SEGLVLTDFWATWCGPCRMVAPVLEEIQEERGEALKIVKMDVDENPETPGSFGVMSIPTLLIKK 78          
The following BLAST results are available for this feature:
BLAST of CX287332 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
THIO_MYCBO3.873e-1543.42Thioredoxin OS=Mycobacterium bovis GN=trxA PE=3 SV... [more]
TRXB_MYCLE5.058e-1542.11Bifunctional thioredoxin reductase/thioredoxin OS=... [more]
THIO_BUCAP1.472e-1441.33Thioredoxin OS=Buchnera aphidicola subsp. Schizaph... [more]
THIO_STAS12.510e-1450.85Thioredoxin OS=Staphylococcus saprophyticus subsp.... [more]
THIO_STAHJ3.278e-1450.85Thioredoxin OS=Staphylococcus haemolyticus (strain... [more]
THIO1_CHLTE7.303e-1440.85Thioredoxin-1 OS=Chlorobium tepidum GN=trx1 PE=3 S... [more]
THIO1_SYNY39.538e-1441.10Thioredoxin-like protein slr0233 OS=Synechocystis ... [more]
THIO_MYCSM1.246e-1343.04Thioredoxin OS=Mycobacterium smegmatis GN=trxA PE=... [more]
THIO_LISMO4.734e-1341.77Thioredoxin OS=Listeria monocytogenes GN=trxA PE=3... [more]
THIO_LISIN4.734e-1341.77Thioredoxin OS=Listeria innocua GN=trxA PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC01008D05SK Veg1 Citrus clementina cDNA clone C01008D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287332 ID=CX287332; Name=CX287332; organism=Citrus clementina; type=EST; length=406bp
GTCTTCTTCCTTAATTCGATCTCTGGCCGTCGGAAATTCGCCGAGTTCAA
GGGCCTTAAGGTCAGACCTGTTCGCTCGTTCGGATCGGTGAGTCAGGGTT
CGAGTTCGAGCTTCAGACTCCGTCGCGGTGCGCAAATCGTGTGCGAGGCT
CAAGAAACTGCCGTTGAAGTGCCTGCTGTGACAGATGCAACATGGCAATC
ACTTGTTCTTGACTCTGGATCACCTGTGCTTGTTGAATTCTGGGCTCCAT
GGTGCGGGCCTTGCCGGATGATCCACCCTATTATTGATGAGCTATCAAAG
CAATATGTGGGGAAGCTAAAATGCTATAAGGTTAATACTGATGAGAGTCC
TTCAATTGCTACTAGATATGGAATTAGGAGCATCCCAACTGTCATGATAT
TTAAGA
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