CX287332

Overview
NameCX287332
Unique NameCX287332
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length406
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7097 contig Ccv1_Contig7097:141..546. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287332 vs. ExPASy Swiss-Prot
Match: THIO2_ANASP (Thioredoxin-2 OS=Anabaena sp. (strain PCC 7120) GN=trxB PE=1 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 8.075e-13
Identity = 30/79 (37.97%), Postives = 49/79 (62.03%), Query Frame = 1
Query:  169 VPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFK 405
            V  +TDA ++S VL +  PVLV FWA WCGPC+++ P+I+  +  Y  +LK  K+  D +P+   +Y +  +P + + K
Sbjct:    5 VITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKYKVEGVPALRLVK 83          
BLAST of CX287332 vs. ExPASy Swiss-Prot
Match: TRXX_ARATH (Thioredoxin-X, chloroplastic OS=Arabidopsis thaliana GN=ATHX PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.055e-12
Identity = 29/79 (36.71%), Postives = 51/79 (64.56%), Query Frame = 1
Query:  169 VPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFK 405
            +  + ++ + S VL+S  PVLVEF A WCGPC++I+P ++ LS++Y  KL   K++ D +P +   + +  +P  ++FK
Sbjct:   71 IKEIGESEFSSTVLESAQPVLVEFVATWCGPCKLIYPAMEALSQEYGDKLTIVKIDHDANPKLIAEFKVYGLPHFILFK 149          
BLAST of CX287332 vs. ExPASy Swiss-Prot
Match: THIO_BORBU (Thioredoxin OS=Borrelia burgdorferi GN=trxA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.068e-12
Identity = 25/58 (43.10%), Postives = 44/58 (75.86%), Query Frame = 1
Query:  223 PVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVM 396
            P +++F+A WCGPC+M+ PI ++LSK+Y   +  YKV+TD+   I++  G++S+PT++
Sbjct:   30 PAIIDFYANWCGPCKMLSPIFEKLSKKYENSIDFYKVDTDKEQDISSAIGVQSLPTIL 87          
BLAST of CX287332 vs. ExPASy Swiss-Prot
Match: THIO2_SYNY3 (Thioredoxin-like protein slr1139 OS=Synechocystis sp. (strain PCC 6803) GN=slr1139 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.068e-12
Identity = 29/76 (38.16%), Postives = 44/76 (57.89%), Query Frame = 1
Query:  178 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFK 405
            +TDA ++        PVLV FWA WCGPCR++ P I  ++K Y  KLK  K+  D +P+   +  +  +P + +FK
Sbjct:    6 ITDAEFEQETQGQTKPVLVYFWASWCGPCRLMAPAIQAIAKDYGDKLKVLKLEVDPNPAAVAQCKVEGVPALRLFK 81          
BLAST of CX287332 vs. ExPASy Swiss-Prot
Match: THIOT_DROME (Thioredoxin-T OS=Drosophila melanogaster GN=TrxT PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.166e-11
Identity = 28/70 (40.00%), Postives = 44/70 (62.86%), Query Frame = 1
Query:  196 QSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFK 405
            Q L+L     V+++F+A WCGPC++I P +DEL+ +Y  ++   KVN DE+  I   Y + S+PT +  K
Sbjct:   13 QQLILAEDKLVVIDFYADWCGPCKIIAPKLDELAHEYSDRVVVLKVNVDENEDITVEYNVNSMPTFVFIK 82          
BLAST of CX287332 vs. ExPASy Swiss-Prot
Match: PDIA6_MESAU (Protein disulfide-isomerase A6 OS=Mesocricetus auratus GN=PDIA6 PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.787e-11
Identity = 34/84 (40.48%), Postives = 49/84 (58.33%), Query Frame = 1
Query:  166 EVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHP----IIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFK 405
            +V  +TD T+   VLDS    +VEF+APWCG C+ + P       E+ +Q  GK+K   V+   +  +A RYGIR  PT+ IF+
Sbjct:  161 DVIELTDDTFDKNVLDSDDVWMVEFYAPWCGHCKNLEPEWATAATEVKEQTKGKVKLAAVDATVNQVLANRYGIRGFPTIKIFQ 244          
BLAST of CX287332 vs. ExPASy Swiss-Prot
Match: THIO_TREPA (Thioredoxin OS=Treponema pallidum GN=trxA PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.558e-11
Identity = 23/66 (34.85%), Postives = 44/66 (66.67%), Query Frame = 1
Query:  208 LDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFK 405
            +++   V+V+FWAPWCG C+M+ P+++E+  +    +   K+N D+   +A  + + SIPT+++FK
Sbjct:   15 IETNPLVIVDFWAPWCGSCKMLGPVLEEVESEVGSGVVIGKLNVDDDQDLAVEFNVASIPTLIVFK 80          
BLAST of CX287332 vs. ExPASy Swiss-Prot
Match: THIO_CHLCV (Thioredoxin OS=Chlamydophila caviae GN=trxA PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.871e-11
Identity = 27/60 (45.00%), Postives = 44/60 (73.33%), Query Frame = 1
Query:  226 VLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFK 405
            VL++F+A WCGPC+M+ P+++ L  + V  +   KVN D+ P+ A +YG+ SIPT+++FK
Sbjct:   19 VLIDFFAEWCGPCKMLTPVLESLEAE-VSSVLIGKVNIDDHPAPAEQYGVSSIPTLILFK 77          
BLAST of CX287332 vs. ExPASy Swiss-Prot
Match: THIO2_DROYA (Thioredoxin-2 OS=Drosophila yakuba GN=Trx-2 PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.871e-11
Identity = 30/64 (46.88%), Postives = 40/64 (62.50%), Query Frame = 1
Query:  214 SGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFK 405
            SG  V+++F+A WCGPC+MI P + ELS QY   +   KV+ DE   IA  Y I S+PT +  K
Sbjct:   19 SGKLVVLDFFATWCGPCKMISPKLAELSTQYADTVVVLKVDVDECEDIAMEYNISSMPTFVFLK 82          
BLAST of CX287332 vs. ExPASy Swiss-Prot
Match: PDIA6_RAT (Protein disulfide-isomerase A6 OS=Rattus norvegicus GN=Pdia6 PE=1 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 9.871e-11
Identity = 33/84 (39.29%), Postives = 50/84 (59.52%), Query Frame = 1
Query:  166 EVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHP----IIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFK 405
            +V  +TD T+   VLDS    +VEF+APWCG C+ + P       E+ +Q  GK+K   V+   +  +A+RYGI+  PT+ IF+
Sbjct:  161 DVVELTDDTFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAATEVKEQTKGKVKLAAVDATVNQVLASRYGIKGFPTIKIFQ 244          
The following BLAST results are available for this feature:
BLAST of CX287332 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
THIO2_ANASP8.075e-1337.97Thioredoxin-2 OS=Anabaena sp. (strain PCC 7120) GN... [more]
TRXX_ARATH1.055e-1236.71Thioredoxin-X, chloroplastic OS=Arabidopsis thalia... [more]
THIO_BORBU3.068e-1243.10Thioredoxin OS=Borrelia burgdorferi GN=trxA PE=3 S... [more]
THIO2_SYNY33.068e-1238.16Thioredoxin-like protein slr1139 OS=Synechocystis ... [more]
THIOT_DROME1.166e-1140.00Thioredoxin-T OS=Drosophila melanogaster GN=TrxT P... [more]
PDIA6_MESAU5.787e-1140.48Protein disulfide-isomerase A6 OS=Mesocricetus aur... [more]
THIO_TREPA7.558e-1134.85Thioredoxin OS=Treponema pallidum GN=trxA PE=3 SV=... [more]
THIO_CHLCV9.871e-1145.00Thioredoxin OS=Chlamydophila caviae GN=trxA PE=3 S... [more]
THIO2_DROYA9.871e-1146.88Thioredoxin-2 OS=Drosophila yakuba GN=Trx-2 PE=3 S... [more]
PDIA6_RAT9.871e-1139.29Protein disulfide-isomerase A6 OS=Rattus norvegicu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01008D05SK Veg1 Citrus clementina cDNA clone C01008D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287332 ID=CX287332; Name=CX287332; organism=Citrus clementina; type=EST; length=406bp
GTCTTCTTCCTTAATTCGATCTCTGGCCGTCGGAAATTCGCCGAGTTCAA
GGGCCTTAAGGTCAGACCTGTTCGCTCGTTCGGATCGGTGAGTCAGGGTT
CGAGTTCGAGCTTCAGACTCCGTCGCGGTGCGCAAATCGTGTGCGAGGCT
CAAGAAACTGCCGTTGAAGTGCCTGCTGTGACAGATGCAACATGGCAATC
ACTTGTTCTTGACTCTGGATCACCTGTGCTTGTTGAATTCTGGGCTCCAT
GGTGCGGGCCTTGCCGGATGATCCACCCTATTATTGATGAGCTATCAAAG
CAATATGTGGGGAAGCTAAAATGCTATAAGGTTAATACTGATGAGAGTCC
TTCAATTGCTACTAGATATGGAATTAGGAGCATCCCAACTGTCATGATAT
TTAAGA
back to top