CX287338

Overview
NameCX287338
Unique NameCX287338
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length403
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1060 contig Ccv1_Contig1060:91..493. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287338 vs. ExPASy Swiss-Prot
Match: BEV1A_BETVE (Major pollen allergen Bet v 1-A OS=Betula verrucosa GN=BETVIA PE=1 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 1.530e-24
Identity = 59/117 (50.43%), Postives = 74/117 (63.25%), Query Frame = 3
Query:   54 MGVLTLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPVSIKKFNFVEGADWKYFKHRVDALDKENKIYNYTAIEGE--GDANIPTIDHVSYETKVVGTPDGGS 398
            MGV     E TS +P  +LFK F+L  D L PKV PQ + +VE I G+GGP +IKK +F EG  +KY K RVD +D  N  YNY+ IEG   GD    T++ +S E K+V TPDGGS
Sbjct:    1 MGVFNYETETTSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPEGFPFKYVKDRVDEVDHTNFKYNYSVIEGGPIGD----TLEKISNEIKIVATPDGGS 113          
BLAST of CX287338 vs. ExPASy Swiss-Prot
Match: BEV1L_BETVE (Major pollen allergen Bet v 1-L OS=Betula verrucosa GN=BETV1L PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 1.998e-24
Identity = 58/116 (50.00%), Postives = 74/116 (63.79%), Query Frame = 3
Query:   54 MGVLTLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPVSIKKFNFVEGADWKYFKHRVDALDKENKIYNYTAIEG--EGDANIPTIDHVSYETKVVGTPDGG 395
            MGV     E TS +P  ++FK F+L  D L+PKV PQ + +VE I G+GGP +IKK NF EG  +KY K RVD +D  N  YNY+ IEG   GD    T++ +S E K+V TPDGG
Sbjct:    1 MGVFNYETEATSVIPAARMFKAFILDGDKLVPKVAPQAISSVENIEGNGGPGTIKKINFPEGFPFKYVKDRVDEVDHTNFKYNYSVIEGGPVGD----TLEKISNEIKIVATPDGG 112          
BLAST of CX287338 vs. ExPASy Swiss-Prot
Match: BEV1M_BETVE (Major pollen allergen Bet v 1-M/N OS=Betula verrucosa GN=BETV1M PE=1 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 5.813e-24
Identity = 56/115 (48.70%), Postives = 74/115 (64.35%), Query Frame = 3
Query:   54 MGVLTLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPVSIKKFNFVEGADWKYFKHRVDALDKENKIYNYTAIEGEGDANIPTIDHVSYETKVVGTPDGGS 398
            MGV    +E TS +P  +LFK F+L  D L+PKV PQ + +VE I G+GGP +IKK  F EG+ +KY K RVD +D  N  Y+Y+ I  EG A   T++ +  E K+V TPDGGS
Sbjct:    1 MGVFNYESETTSVIPAARLFKAFILDGDNLIPKVAPQAISSVENIEGNGGPGTIKKITFPEGSPFKYVKERVDEVDHANFKYSYSMI--EGGALGDTLEKICNEIKIVATPDGGS 113          
BLAST of CX287338 vs. ExPASy Swiss-Prot
Match: MPAC2_CARBE (Major pollen allergen Car b 1 isoform 2 OS=Carpinus betulus PE=1 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 2.209e-23
Identity = 57/117 (48.72%), Postives = 74/117 (63.25%), Query Frame = 3
Query:   54 MGVLTLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPVSIKKFNFVEGADWKYFKHRVDALDKENKIYNYTAIEGE--GDANIPTIDHVSYETKVVGTPDGGS 398
            MGV    AE TS +P  +LFK F+L  + L+PKV PQ V +VE + G+GGP +IKK  F EG+  KY K RV+ +D  N  YNYT IEG+  GD     ++ VS+E K+V  P GGS
Sbjct:    1 MGVFNYEAETTSVIPAARLFKAFILDGNKLIPKVSPQAVSSVENVEGNGGPGTIKKITFSEGSPVKYVKERVEEIDHTNFKYNYTVIEGDVLGD----KLEKVSHELKIVAAPGGGS 113          
BLAST of CX287338 vs. ExPASy Swiss-Prot
Match: BEV1J_BETVE (Major pollen allergen Bet v 1-J OS=Betula verrucosa GN=BETV1J PE=1 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 2.209e-23
Identity = 57/117 (48.72%), Postives = 74/117 (63.25%), Query Frame = 3
Query:   54 MGVLTLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPVSIKKFNFVEGADWKYFKHRVDALDKENKIYNYTAIEG--EGDANIPTIDHVSYETKVVGTPDGGS 398
            MGV     E TS +P  +LFK F+L  D L PKV PQ + +VE I G+GGP +IKK +F EG  +KY K RVD +D  N  Y+Y+ IEG   GD    T++ +S E K+V TP+GGS
Sbjct:    1 MGVFNYETEATSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPEGFPFKYVKDRVDEVDHTNFKYSYSVIEGGPVGD----TLEKISNEIKIVATPNGGS 113          
BLAST of CX287338 vs. ExPASy Swiss-Prot
Match: BEV1E_BETVE (Major pollen allergen Bet v 1-E OS=Betula verrucosa GN=BETV1E PE=1 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 2.209e-23
Identity = 57/117 (48.72%), Postives = 74/117 (63.25%), Query Frame = 3
Query:   54 MGVLTLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPVSIKKFNFVEGADWKYFKHRVDALDKENKIYNYTAIEG--EGDANIPTIDHVSYETKVVGTPDGGS 398
            MGV     E TS +P  +LFK F+L  D L PKV PQ + +VE I G+GGP +IKK +F EG  +KY K RVD +D  N  Y+Y+ IEG   GD    T++ +S E K+V TP+GGS
Sbjct:    1 MGVFNYETEATSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPEGIPFKYVKGRVDEVDHTNFKYSYSVIEGGPVGD----TLEKISNEIKIVATPNGGS 113          
BLAST of CX287338 vs. ExPASy Swiss-Prot
Match: MPAC1_CARBE (Major pollen allergen Car b 1 isoforms 1A and 1B OS=Carpinus betulus PE=1 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 2.885e-23
Identity = 56/117 (47.86%), Postives = 73/117 (62.39%), Query Frame = 3
Query:   54 MGVLTLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPVSIKKFNFVEGADWKYFKHRVDALDKENKIYNYTAIEGE--GDANIPTIDHVSYETKVVGTPDGGS 398
            MGV    AE  S +P  +LFK +VL  D L+PKV PQV+ +VE + G+GGP +IK   F EG  +K+ K RVD +D  N  YNYT IEG+  GD     ++ VS+E K+V  P GGS
Sbjct:    1 MGVFNYEAETPSVIPAARLFKSYVLDGDKLIPKVAPQVISSVENVGGNGGPGTIKNITFAEGIPFKFVKERVDEVDNANFKYNYTVIEGDVLGD----KLEKVSHELKIVAAPGGGS 113          
BLAST of CX287338 vs. ExPASy Swiss-Prot
Match: BEV1F_BETVE (Major pollen allergen Bet v 1-F/I OS=Betula verrucosa GN=BETV1F PE=1 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 2.885e-23
Identity = 57/117 (48.72%), Postives = 74/117 (63.25%), Query Frame = 3
Query:   54 MGVLTLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPVSIKKFNFVEGADWKYFKHRVDALDKENKIYNYTAIEG--EGDANIPTIDHVSYETKVVGTPDGGS 398
            MGV     E TS +P  +LFK F+L  D L PKV PQ + +VE I G+GGP +IKK +F EG  +KY K RVD +D  N  Y+Y+ IEG   GD    T++ +S E K+V TP+GGS
Sbjct:    1 MGVFNYEIEATSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPEGFPFKYVKDRVDEVDHTNFKYSYSVIEGGPVGD----TLEKISNEIKIVATPNGGS 113          
BLAST of CX287338 vs. ExPASy Swiss-Prot
Match: MPAG1_ALNGL (Major pollen allergen Aln g 1 OS=Alnus glutinosa PE=1 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 8.394e-23
Identity = 57/117 (48.72%), Postives = 74/117 (63.25%), Query Frame = 3
Query:   54 MGVLTLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPVSIKKFNFVEGADWKYFKHRVDALDKENKIYNYTAIEG--EGDANIPTIDHVSYETKVVGTPDGGS 398
            MGV    AE  S +P  +LFK F+L  D LLPKV P+ V +VE I G+GGP +IKK  F EG+ +KY K RVD +D+ N  Y+++ IEG   GDA    ++ V  E K+V  PDGGS
Sbjct:    1 MGVFNYEAETPSVIPAARLFKAFILDGDKLLPKVAPEAVSSVENIEGNGGPGTIKKITFPEGSPFKYVKERVDEVDRVNFKYSFSVIEGGAVGDA----LEKVCNEIKIVAAPDGGS 113          
BLAST of CX287338 vs. ExPASy Swiss-Prot
Match: MPAC1_CORAV (Major pollen allergen Cor a 1 isoforms 5, 6, 11 and 16 OS=Corylus avellana PE=1 SV=3)

HSP 1 Score: 101.679 bits (252), Expect = 1.212e-21
Identity = 53/117 (45.30%), Postives = 71/117 (60.68%), Query Frame = 3
Query:   54 MGVLTLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPVSIKKFNFVEGADWKYFKHRVDALDKENKIYNYTAIEGE--GDANIPTIDHVSYETKVVGTPDGGS 398
            MGV     E  S +P  +LFK +VL  D L+PKV PQ + +VE + G+GGP +IK   F EG+ +KY K RVD +D  N  Y+YT IEG+  GD     ++ V +E K+V  P GGS
Sbjct:    1 MGVFNYEVETPSVIPAARLFKSYVLDGDKLIPKVAPQAITSVENVEGNGGPGTIKNITFGEGSRYKYVKERVDEVDNTNFTYSYTVIEGDVLGD----KLEKVCHELKIVAAPGGGS 113          
The following BLAST results are available for this feature:
BLAST of CX287338 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
BEV1A_BETVE1.530e-2450.43Major pollen allergen Bet v 1-A OS=Betula verrucos... [more]
BEV1L_BETVE1.998e-2450.00Major pollen allergen Bet v 1-L OS=Betula verrucos... [more]
BEV1M_BETVE5.813e-2448.70Major pollen allergen Bet v 1-M/N OS=Betula verruc... [more]
MPAC2_CARBE2.209e-2348.72Major pollen allergen Car b 1 isoform 2 OS=Carpinu... [more]
BEV1J_BETVE2.209e-2348.72Major pollen allergen Bet v 1-J OS=Betula verrucos... [more]
BEV1E_BETVE2.209e-2348.72Major pollen allergen Bet v 1-E OS=Betula verrucos... [more]
MPAC1_CARBE2.885e-2347.86Major pollen allergen Car b 1 isoforms 1A and 1B O... [more]
BEV1F_BETVE2.885e-2348.72Major pollen allergen Bet v 1-F/I OS=Betula verruc... [more]
MPAG1_ALNGL8.394e-2348.72Major pollen allergen Aln g 1 OS=Alnus glutinosa P... [more]
MPAC1_CORAV1.212e-2145.30Major pollen allergen Cor a 1 isoforms 5, 6, 11 an... [more]

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Properties
Property NameValue
Genbank descriptionC01008D12SK Veg1 Citrus clementina cDNA clone C01008D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287338 ID=CX287338; Name=CX287338; organism=Citrus clementina; type=EST; length=403bp
GAGGGTTGATCGATAGTTTTCATATTCTTTCTTTGTTTAACTCTTAGACA
ATCATGGGTGTTCTCACGTTGAATGCAGAGGAAACAAGCACTCTCCCCCC
TGAAAAGTTGTTCAAACTTTTTGTCCTTCATTTCGACACCCTTCTGCCCA
AAGTCCTGCCTCAGGTTGTAAAGAACGTTGAATTGATTTCAGGGGATGGA
GGCCCTGTAAGCATCAAGAAGTTTAACTTTGTTGAAGGTGCTGATTGGAA
GTACTTTAAGCATAGGGTTGATGCATTGGACAAAGAGAACAAGATATACA
ATTACACGGCAATTGAAGGTGAGGGTGATGCTAACATCCCTACTATTGAT
CATGTTTCTTATGAGACTAAGGTTGTGGGCACCCCTGACGGAGGAAGCAA
GAG
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