CX287338

Overview
NameCX287338
Unique NameCX287338
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length403
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287338 vs. ExPASy Swiss-Prot
Match: ABR18_PEA (ABA-responsive protein ABR18 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.093e-20
Identity = 49/115 (42.61%), Postives = 73/115 (63.48%), Query Frame = 3
Query:   54 MGVLTLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPVSIKKFNFVEGADWKYFKHRVDALDKENKIYNYTAIEGEGDANIPTIDHVSYETKVVGTPDGGS 398
            MGV T   + TST+PP KLFK  V   D ++PKV+  + K VE++ G+GGP ++KK  FVEG    Y  H+V+A+D     YNY+ + G G ++I  ++ +S+E K+   P+GGS
Sbjct:    1 MGVFTYENDTTSTVPPAKLFKAVVHDADLIVPKVVDSI-KTVEILEGNGGPGTVKKLTFVEGGQTLYVLHKVEAIDDAKFEYNYSIVGGVGISDI--VEKISFEAKLFEGPNGGS 112          
BLAST of CX287338 vs. ExPASy Swiss-Prot
Match: PR1_MEDSA (Class-10 pathogenesis-related protein 1 OS=Medicago sativa GN=MSPR10-1 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.935e-19
Identity = 47/115 (40.87%), Postives = 72/115 (62.61%), Query Frame = 3
Query:   54 MGVLTLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPVSIKKFNFVEGADWKYFKHRVDALDKENKIYNYTAIEGEGDANIPTIDHVSYETKVVGTPDGGS 398
            MGV     E TS + P +L+K  V   D L+PKV+   ++++E++ G+GG  +IKK  FVEG + KY  H+VD +D  N  YNY+ + G G  +  T++ +S+E+K+   PDGGS
Sbjct:    1 MGVFNFEDETTSIVAPARLYKALVTDSDNLIPKVI-DAIQSIEIVEGNGGAGTIKKLTFVEGGETKYDLHKVDLVDDVNFAYNYSIVGGGGLPD--TVEKISFESKLSAGPDGGS 112          
BLAST of CX287338 vs. ExPASy Swiss-Prot
Match: L18A_LUPLU (Protein LlR18A OS=Lupinus luteus GN=LLR18A PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.767e-18
Identity = 43/115 (37.39%), Postives = 73/115 (63.48%), Query Frame = 3
Query:   54 MGVLTLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPVSIKKFNFVEGADWKYFKHRVDALDKENKIYNYTAIEGEGDANIPTIDHVSYETKVVGTPDGGS 398
            MG+     E++ST+ P KL+K      D ++PKV+ + +++VE++ G+GGP +IKK   +      +  H++DA+D+ N  YNY+ I GEG     +++ +SYE+K++  PDGGS
Sbjct:    1 MGIFAFENEQSSTVAPAKLYKALTKDSDEIVPKVI-EPIQSVEIVEGNGGPGTIKKIIAIHDGHTSFVLHKLDAIDEANLTYNYSIIGGEGLDE--SLEKISYESKILPGPDGGS 112          
BLAST of CX287338 vs. ExPASy Swiss-Prot
Match: IPRT1_CATRO (Probable intracellular pathogenesis-related protein T1 OS=Catharanthus roseus GN=PCKR3 PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 4.767e-18
Identity = 47/107 (43.93%), Postives = 67/107 (62.62%), Query Frame = 3
Query:   54 MGVLTLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPVSIKKFNFVEGADWKYFKHRVDALDKENKIYNYTAIEGEGDANIPTIDHVSYETKV 374
            MGV++ + E  S+L   KLFK FVL   TL+ K LP V+K+VE++ GDGG  +IK  +F EG      KH V+ LDK+N  Y Y+ ++GE  A +P +  +SY  K+
Sbjct:    1 MGVISYDMEIKSSLSAAKLFKAFVLDVGTLINKALPNVIKSVEILQGDGGAGTIKLVHFGEGGPVPSVKHHVEELDKDNMSYKYSIVDGE--ALMPGLQSISYVIKI 105          
BLAST of CX287338 vs. ExPASy Swiss-Prot
Match: PR1_PHAVU (Pathogenesis-related protein 1 OS=Phaseolus vulgaris PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 1.811e-17
Identity = 42/115 (36.52%), Postives = 71/115 (61.74%), Query Frame = 3
Query:   54 MGVLTLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPVSIKKFNFVEGADWKYFKHRVDALDKENKIYNYTAIEGEGDANIPTIDHVSYETKVVGTPDGGS 398
            MGV T   + TS + P  L+K      DT+ PK LP   K+VE++ G+GGP +IKK +FVE  + K+  H+++++D+ N  Y+Y+ + G   A   T + +++++K+   P+GGS
Sbjct:    1 MGVFTFEDQTTSPVAPATLYKAVAKDADTIFPKALPDSFKSVEIVEGNGGPGTIKKISFVEDGETKFVLHKIESIDEANLGYSYSIVGGV--ALPETAEKITFDSKLSDGPNGGS 113          
BLAST of CX287338 vs. ExPASy Swiss-Prot
Match: DRR1_PEA (Disease resistance response protein Pi176 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.811e-17
Identity = 45/115 (39.13%), Postives = 70/115 (60.87%), Query Frame = 3
Query:   54 MGVLTLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPVSIKKFNFVEGADWKYFKHRVDALDKENKIYNYTAIEGEGDANIPTIDHVSYETKVVGTPDGGS 398
            MGV  +  E TS + P  L+K  V   DTL PKV+   +K++E++ G+GG  +IKK  FVE  + K+  H+V+ +D  N  YNY+ + G G  +  T++ +S+E K+   P+GGS
Sbjct:    1 MGVFNVEDEITSVVAPAILYKALVTDADTLTPKVI-DAIKSIEIVEGNGGAGTIKKLTFVEDGETKHVLHKVELVDVANLAYNYSIVGGVGFPD--TVEKISFEAKLSAGPNGGS 112          
BLAST of CX287338 vs. ExPASy Swiss-Prot
Match: PR2_PETCR (Pathogenesis-related protein 2 OS=Petroselinum crispum GN=PR2 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.035e-17
Identity = 46/114 (40.35%), Postives = 72/114 (63.16%), Query Frame = 3
Query:   54 MGVLTLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPVSIKKFNFVEGADWKYFKHRVDALDKENKIYNYTAIEGEGDANIPTIDHVSYETKVVGTPDGG 395
            MG +T + E  S++P + ++K F+L  D ++PKVLPQ +K++E+ISGDGG  +IKK    E + +   K R+D +D E   Y+Y+ I  EGD  +  I+ ++ +  VV T DGG
Sbjct:    1 MGAVTTDVEVASSVPAQTIYKGFLLDMDNIIPKVLPQAIKSIEIISGDGGAGTIKKVTLGEVSQFTVVKQRIDEIDAEALKYSYSII--EGDLLLGIIESITSKFTVVPT-DGG 111          
BLAST of CX287338 vs. ExPASy Swiss-Prot
Match: DRR4_PEA (Disease resistance response protein DRRG49-C OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.270e-17
Identity = 45/115 (39.13%), Postives = 67/115 (58.26%), Query Frame = 3
Query:   54 MGVLTLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPVSIKKFNFVEGADWKYFKHRVDALDKENKIYNYTAIEGEGDANIPTIDHVSYETKVVGTPDGGS 398
            MGV     E TS + P  L K  V   D L PKV+   +K++E++ G+GGP +IKK  FVE  + KY  H+V+ +D  N   NY+ + G G  +  T++ +S+E K+   P+GGS
Sbjct:    1 MGVFNFEEEATSIVAPATLHKALVTDADILTPKVI-DAIKSIEIVEGNGGPGTIKKLTFVEDGETKYVLHKVELVDDANWANNYSIVGGVGLPD--TVEKISFEAKLSAGPNGGS 112          
BLAST of CX287338 vs. ExPASy Swiss-Prot
Match: DRR3_PEA (Disease resistance response protein Pi49 OS=Pisum sativum GN=DRR49A PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.883e-17
Identity = 44/115 (38.26%), Postives = 69/115 (60.00%), Query Frame = 3
Query:   54 MGVLTLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPVSIKKFNFVEGADWKYFKHRVDALDKENKIYNYTAIEGEGDANIPTIDHVSYETKVVGTPDGGS 398
            MGV  +  E TS + P  L+K  V   D L PKV+   +K++E++ G+GG  +IKK  FVE  + K+  H+V+ +D  N  YNY+ + G G  +  T++ +S+E K+   P+GGS
Sbjct:    1 MGVFNVEDEITSVVAPAILYKALVTDADNLTPKVI-DAIKSIEIVEGNGGAGTIKKLTFVEDGETKHVLHKVELVDVANLAYNYSIVGGVGFPD--TVEKISFEAKLSAGPNGGS 112          
BLAST of CX287338 vs. ExPASy Swiss-Prot
Match: RNS1_PANGI (Ribonuclease 1 OS=Panax ginseng PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.533e-16
Identity = 44/114 (38.60%), Postives = 64/114 (56.14%), Query Frame = 3
Query:   57 GVLTLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPVSIKKFNFVEGADWKYFKHRVDALDKENKIYNYTAIEGEGDANIPTIDHVSYETKVVGTPDGGS 398
            GV     E TST+P +KL+   +L  D +LPK  PQ +K+ E+I GDGG  ++K     E + +   K R+DA+DK+   Y Y+ I   GD  +  I+ +     +V TPDGGS
Sbjct:    1 GVQKTEVEATSTVPAQKLYAGLLLDIDDILPKAFPQAIKSSEIIEGDGGVGTVKLVTLGEASQFNTMKQRIDAIDKDALTYTYSII--GGDILLDIIESIVNHFTIVPTPDGGS 112          
The following BLAST results are available for this feature:
BLAST of CX287338 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
ABR18_PEA5.093e-2042.61ABA-responsive protein ABR18 OS=Pisum sativum PE=2... [more]
PR1_MEDSA1.935e-1940.87Class-10 pathogenesis-related protein 1 OS=Medicag... [more]
L18A_LUPLU4.767e-1837.39Protein LlR18A OS=Lupinus luteus GN=LLR18A PE=1 SV... [more]
IPRT1_CATRO4.767e-1843.93Probable intracellular pathogenesis-related protei... [more]
PR1_PHAVU1.811e-1736.52Pathogenesis-related protein 1 OS=Phaseolus vulgar... [more]
DRR1_PEA1.811e-1739.13Disease resistance response protein Pi176 OS=Pisum... [more]
PR2_PETCR4.035e-1740.35Pathogenesis-related protein 2 OS=Petroselinum cri... [more]
DRR4_PEA5.270e-1739.13Disease resistance response protein DRRG49-C OS=Pi... [more]
DRR3_PEA6.883e-1738.26Disease resistance response protein Pi49 OS=Pisum ... [more]
RNS1_PANGI1.533e-1638.60Ribonuclease 1 OS=Panax ginseng PE=1 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01008D12SK Veg1 Citrus clementina cDNA clone C01008D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287338 ID=CX287338; Name=CX287338; organism=Citrus clementina; type=EST; length=403bp
GAGGGTTGATCGATAGTTTTCATATTCTTTCTTTGTTTAACTCTTAGACA
ATCATGGGTGTTCTCACGTTGAATGCAGAGGAAACAAGCACTCTCCCCCC
TGAAAAGTTGTTCAAACTTTTTGTCCTTCATTTCGACACCCTTCTGCCCA
AAGTCCTGCCTCAGGTTGTAAAGAACGTTGAATTGATTTCAGGGGATGGA
GGCCCTGTAAGCATCAAGAAGTTTAACTTTGTTGAAGGTGCTGATTGGAA
GTACTTTAAGCATAGGGTTGATGCATTGGACAAAGAGAACAAGATATACA
ATTACACGGCAATTGAAGGTGAGGGTGATGCTAACATCCCTACTATTGAT
CATGTTTCTTATGAGACTAAGGTTGTGGGCACCCCTGACGGAGGAAGCAA
GAG
back to top