CX287338

Overview
NameCX287338
Unique NameCX287338
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length403
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1060 contig Ccv1_Contig1060:91..493. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287338 vs. ExPASy Swiss-Prot
Match: PRS2_SOLTU (Pathogenesis-related protein STH-2 OS=Solanum tuberosum GN=STH-2 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.616e-16
Identity = 49/116 (42.24%), Postives = 71/116 (61.21%), Query Frame = 3
Query:   54 MGVLTLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPVSIKKFNFVEGADWKYFKHRVDALDKENKIYNYTAIEGE--GDANIPTIDHVSYETKVVGTPDGG 395
            MGV +   E T+ + P +LFK  V+  D L+PK++PQV KN+E   GDG   SIKK NFVEG+  KY KH++  +D +N +  Y+ IEG+  GD     ++ +SY+ K     +GG
Sbjct:    1 MGVTSYTHETTTPIAPTRLFKALVVDSDNLIPKLMPQV-KNIEA-EGDG---SIKKMNFVEGSPIKYLKHKIHVVDDKNLVTKYSMIEGDVLGD----KLESISYDLKFEAHGNGG 107          
BLAST of CX287338 vs. ExPASy Swiss-Prot
Match: RAP_TAROF (Root allergen protein OS=Taraxacum officinale PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.827e-16
Identity = 42/107 (39.25%), Postives = 63/107 (58.88%), Query Frame = 3
Query:   78 EETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPVSIKKFNFVEGADWKYFKHRVDALDKENKIYNYTAIEGEGDANIPTIDHVSYETKVVGTPDGGS 398
            E TS+L P  +FK FV+ FDT+ PK  P+  K+++ I GDGG  +IK   + +G  +   KH+VDA+D  N   +YT    EGD  +  I+  ++  K + + DGGS
Sbjct:    7 EITSSLSPSNIFKAFVIDFDTIAPKAEPETYKSIKTIEGDGGVGTIKSITYSDGVPFTSSKHKVDAIDSNNFSISYTIF--EGDVLMGIIESGTHHLKFLPSADGGS 111          
BLAST of CX287338 vs. ExPASy Swiss-Prot
Match: ALL2_APIGR (Major allergen Api g 2 OS=Apium graveolens PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.610e-16
Identity = 46/114 (40.35%), Postives = 67/114 (58.77%), Query Frame = 3
Query:   54 MGVLTLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPVSIKKFNFVEGADWKYFKHRVDALDKENKIYNYTAIEGEGDANIPTIDHVSYETKVVGTPDGG 395
            MGV     E  ST+  EK+++ F+L  DT+ PKVLPQ++K+VE++ GDGG  ++K  +  E  ++   K +VD +DK    Y YT I   GD  +  ++ V  E  VV T DGG
Sbjct:    1 MGVQKTVVEAPSTVSAEKMYQGFLLDMDTVFPKVLPQLIKSVEILEGDGGVGTVKLVHLGEATEYTTMKQKVDVIDKAGLAYTYTTI--GGDILVDVLESVVNEFVVVPT-DGG 111          
BLAST of CX287338 vs. ExPASy Swiss-Prot
Match: L18B_LUPLU (Protein LlR18B OS=Lupinus luteus GN=LLR18B PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 9.939e-16
Identity = 40/115 (34.78%), Postives = 68/115 (59.13%), Query Frame = 3
Query:   54 MGVLTLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPVSIKKFNFVEGADWKYFKHRVDALDKENKIYNYTAIEGEGDANIPTIDHVSYETKVVGTPDGGS 398
            MGV     E  S +   KLFK      D ++PKV+ Q+ ++VE++ G+GGP ++KK     G    Y  H++DA+D+ +  YNY+ + G G     +++ +++E+K++  PDGGS
Sbjct:    1 MGVFAFEDEHPSAVAQAKLFKALTKDSDDIIPKVIEQI-QSVEIVEGNGGPGTVKKITASHGGHTSYVLHKIDAIDEASFEYNYSIVGGTGLDE--SLEKITFESKLLSGPDGGS 112          
BLAST of CX287338 vs. ExPASy Swiss-Prot
Match: ABR17_PEA (ABA-responsive protein ABR17 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 9.939e-16
Identity = 43/115 (37.39%), Postives = 69/115 (60.00%), Query Frame = 3
Query:   54 MGVLTLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPVSIKKFNFVEGADWKYFKHRVDALDKENKIYNYTAIEGEGDANIPTIDHVSYETKVVGTPDGGS 398
            MGV   + E  ST+ P KL+K      D ++PKV+ +  + VE+I G+GGP +IKK + +E     Y  H++DA+D+ N  YNY+ + G G     +++ V++ET ++   DGGS
Sbjct:    1 MGVFVFDDEYVSTVAPPKLYKALAKDADEIVPKVIKEA-QGVEIIEGNGGPGTIKKLSILEDGKTNYVLHKLDAVDEANFGYNYSLVGGPGLHE--SLEKVAFETIILAGSDGGS 112          
BLAST of CX287338 vs. ExPASy Swiss-Prot
Match: PRS1_SOLTU (Pathogenesis-related protein STH-21 OS=Solanum tuberosum GN=STH-21 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.298e-15
Identity = 48/116 (41.38%), Postives = 70/116 (60.34%), Query Frame = 3
Query:   54 MGVLTLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPVSIKKFNFVEGADWKYFKHRVDALDKENKIYNYTAIEGE--GDANIPTIDHVSYETKVVGTPDGG 395
            MGV +   E T+ + P +LFK  V+  D L+PK++PQV KN+E   GDG   SIKK  FVEG+  KY KH++  +D +N +  Y+ IEG+  GD     ++ +SY+ K     +GG
Sbjct:    1 MGVTSYTLETTTPVAPTRLFKALVVDSDNLIPKLMPQV-KNIEA-EGDG---SIKKMTFVEGSPIKYLKHKIHVVDDKNLVTKYSMIEGDVLGD----KLESISYDLKFEAHGNGG 107          
BLAST of CX287338 vs. ExPASy Swiss-Prot
Match: SAM22_SOYBN (Stress-induced protein SAM22 OS=Glycine max PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.695e-15
Identity = 42/116 (36.21%), Postives = 71/116 (61.21%), Query Frame = 3
Query:   54 MGVLTLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPVSIKKFNFVEGADWKYFKHRVDALDKENKIYNYTAIEGEGDANIP-TIDHVSYETKVVGTPDGGS 398
            MGV T   E  S + P  L+K  V   D ++PK L    K+VE + G+GGP +IKK  F+E  + K+  H+++++D+ N  Y+Y+ +   G A +P T + +++++K+V  P+GGS
Sbjct:    1 MGVFTFEDEINSPVAPATLYKALVTDADNVIPKALDSF-KSVENVEGNGGPGTIKKITFLEDGETKFVLHKIESIDEANLGYSYSVV---GGAALPDTAEKITFDSKLVAGPNGGS 112          
BLAST of CX287338 vs. ExPASy Swiss-Prot
Match: PR2_PHAVU (Pathogenesis-related protein 2 OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.777e-15
Identity = 42/116 (36.21%), Postives = 71/116 (61.21%), Query Frame = 3
Query:   54 MGVLTLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPVSIKKFNFVEGADWKYFKHRVDALDKENKIYNYTAIEGEGDANIP-TIDHVSYETKVVGTPDGGS 398
            M V T   + TS + P  L+K  V   DT++PK +    K+VE++ G+GGP +IKK +FVE  + K+  H+++ +D+ N  Y+Y+ +   G A +P T + +S ++K+   P+GGS
Sbjct:    1 MAVFTFEDQTTSPVAPATLYKALVKDADTIVPKAVDSF-KSVEIVEGNGGPGTIKKISFVEDGETKFVLHKIEEIDEANLGYSYSIV---GGAALPDTAEKISIDSKLSDGPNGGS 112          
BLAST of CX287338 vs. ExPASy Swiss-Prot
Match: PR13_PETCR (Pathogenesis-related protein B OS=Petroselinum crispum GN=PCPR1-3 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.933e-15
Identity = 44/114 (38.60%), Postives = 65/114 (57.02%), Query Frame = 3
Query:   54 MGVLTLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPVSIKKFNFVEGADWKYFKHRVDALDKENKIYNYTAIEGEGDANIPTIDHVSYETKVVGTPDGG 395
            MGV     E TS++  EKLFK   L  DTLLP+VLP  +K+ E + GDGG  ++K  +  + + +K  K +VDA+DK    Y+Y+ I  +GD  +  I+ ++     V   DGG
Sbjct:    1 MGVQKSEVEATSSVSAEKLFKGLCLDIDTLLPRVLPGAIKSSETLEGDGGVGTVKLVHLGDASPFKTMKQKVDAIDKATFTYSYSII--DGDILLGFIESINNHFTAVPNADGG 112          
BLAST of CX287338 vs. ExPASy Swiss-Prot
Match: PR11_PETCR (Pathogenesis-related protein A OS=Petroselinum crispum GN=PCPR1-1 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.442e-15
Identity = 44/114 (38.60%), Postives = 65/114 (57.02%), Query Frame = 3
Query:   54 MGVLTLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPVSIKKFNFVEGADWKYFKHRVDALDKENKIYNYTAIEGEGDANIPTIDHVSYETKVVGTPDGG 395
            MGV     E TS++  EKLFK   L  DTLLP+VLP  +K+ E + GDGG  ++K  +  + + +K  K +VDA+DK    Y+Y+ I  +GD  +  I+ ++     V   DGG
Sbjct:    1 MGVQKSEVETTSSVSAEKLFKGLCLDIDTLLPQVLPGAIKSSETLEGDGGVGTVKLVHLGDASPFKTMKQKVDAIDKATFTYSYSII--DGDILLGFIESINNHFTAVPNADGG 112          
The following BLAST results are available for this feature:
BLAST of CX287338 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
PRS2_SOLTU2.616e-1642.24Pathogenesis-related protein STH-2 OS=Solanum tube... [more]
RAP_TAROF5.827e-1639.25Root allergen protein OS=Taraxacum officinale PE=1... [more]
ALL2_APIGR7.610e-1640.35Major allergen Api g 2 OS=Apium graveolens PE=1 SV... [more]
L18B_LUPLU9.939e-1634.78Protein LlR18B OS=Lupinus luteus GN=LLR18B PE=1 SV... [more]
ABR17_PEA9.939e-1637.39ABA-responsive protein ABR17 OS=Pisum sativum PE=2... [more]
PRS1_SOLTU1.298e-1541.38Pathogenesis-related protein STH-21 OS=Solanum tub... [more]
SAM22_SOYBN1.695e-1536.21Stress-induced protein SAM22 OS=Glycine max PE=1 S... [more]
PR2_PHAVU3.777e-1536.21Pathogenesis-related protein 2 OS=Phaseolus vulgar... [more]
PR13_PETCR4.933e-1538.60Pathogenesis-related protein B OS=Petroselinum cri... [more]
PR11_PETCR6.442e-1538.60Pathogenesis-related protein A OS=Petroselinum cri... [more]

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Properties
Property NameValue
Genbank descriptionC01008D12SK Veg1 Citrus clementina cDNA clone C01008D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287338 ID=CX287338; Name=CX287338; organism=Citrus clementina; type=EST; length=403bp
GAGGGTTGATCGATAGTTTTCATATTCTTTCTTTGTTTAACTCTTAGACA
ATCATGGGTGTTCTCACGTTGAATGCAGAGGAAACAAGCACTCTCCCCCC
TGAAAAGTTGTTCAAACTTTTTGTCCTTCATTTCGACACCCTTCTGCCCA
AAGTCCTGCCTCAGGTTGTAAAGAACGTTGAATTGATTTCAGGGGATGGA
GGCCCTGTAAGCATCAAGAAGTTTAACTTTGTTGAAGGTGCTGATTGGAA
GTACTTTAAGCATAGGGTTGATGCATTGGACAAAGAGAACAAGATATACA
ATTACACGGCAATTGAAGGTGAGGGTGATGCTAACATCCCTACTATTGAT
CATGTTTCTTATGAGACTAAGGTTGTGGGCACCCCTGACGGAGGAAGCAA
GAG
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