CX287338

Overview
NameCX287338
Unique NameCX287338
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length403
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1060 contig Ccv1_Contig1060:91..493. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287338 vs. ExPASy Swiss-Prot
Match: ALL1_APIGR (Major allergen Api g 1 OS=Apium graveolens PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.617e-13
Identity = 44/115 (38.26%), Postives = 65/115 (56.52%), Query Frame = 3
Query:   54 MGVLTLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPVSIKKFNFVEGADWKYFKHRVDALDKENKIYNYTAIEGEGDANIPTIDHVSYETKVVGTPDGGS 398
            MGV T   E TS++  EK+F+ FV+  DT+LPK  P   K+VE I GDGGP ++K     +G        R+D ++KE   ++Y+ I  +GD  +  I+ +     +V T DGGS
Sbjct:    1 MGVQTHVLELTSSVSAEKIFQGFVIDVDTVLPKAAPGAYKSVE-IKGDGGPGTLKIITLPDGGPITTMTLRIDGVNKEALTFDYSVI--DGDILLGFIESIENHVVLVPTADGGS 112          
BLAST of CX287338 vs. ExPASy Swiss-Prot
Match: RNS2_PANGI (Ribonuclease 2 OS=Panax ginseng PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.343e-12
Identity = 41/114 (35.96%), Postives = 62/114 (54.39%), Query Frame = 3
Query:   57 GVLTLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPVSIKKFNFVEGADWKYFKHRVDALDKENKIYNYTAIEGEGDANIPTIDHVSYETKVVGTPDGGS 398
            GV     +  S +P EKLFK   L  DT++PK  P+ +K+V+++ G+GG  +IK     +   +   K R+DA+D+    Y YT I   GD  +  I+ +    K+V T DGGS
Sbjct:    1 GVQKTETQAISPVPAEKLFKGSFLDMDTVVPKAFPEGIKSVQVLEGNGGVGTIKNVTLGDATPFNTMKTRIDAIDEHAFTYTYTII--GGDILLDIIESIENHFKIVPT-DGGS 111          
BLAST of CX287338 vs. ExPASy Swiss-Prot
Match: DAU1_DAUCA (Major allergen Dau c 1 OS=Daucus carota PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.309e-11
Identity = 42/115 (36.52%), Postives = 62/115 (53.91%), Query Frame = 3
Query:   54 MGVLTLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPVSIKKFNFVEGADWKYFKHRVDALDKENKIYNYTAIEGEGDANIPTIDHVSYETKVVGTPDGGS 398
            MG  + + E TS++  EK+F   VL  DT++PK  P   K+VE + GDGG  +++     EG+       R DA++KE   Y+ T I  +GD  +  I+ +     VV T DGGS
Sbjct:    1 MGAQSHSLEITSSVSAEKIFSGIVLDVDTVIPKAAPGAYKSVE-VKGDGGAGTVRIITLPEGSPITSMTVRTDAVNKEALTYDSTVI--DGDILLGFIESIETHLVVVPTADGGS 112          
The following BLAST results are available for this feature:
BLAST of CX287338 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
ALL1_APIGR4.617e-1338.26Major allergen Api g 1 OS=Apium graveolens PE=1 SV... [more]
RNS2_PANGI1.343e-1235.96Ribonuclease 2 OS=Panax ginseng PE=1 SV=1[more]
DAU1_DAUCA3.309e-1136.52Major allergen Dau c 1 OS=Daucus carota PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC01008D12SK Veg1 Citrus clementina cDNA clone C01008D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287338 ID=CX287338; Name=CX287338; organism=Citrus clementina; type=EST; length=403bp
GAGGGTTGATCGATAGTTTTCATATTCTTTCTTTGTTTAACTCTTAGACA
ATCATGGGTGTTCTCACGTTGAATGCAGAGGAAACAAGCACTCTCCCCCC
TGAAAAGTTGTTCAAACTTTTTGTCCTTCATTTCGACACCCTTCTGCCCA
AAGTCCTGCCTCAGGTTGTAAAGAACGTTGAATTGATTTCAGGGGATGGA
GGCCCTGTAAGCATCAAGAAGTTTAACTTTGTTGAAGGTGCTGATTGGAA
GTACTTTAAGCATAGGGTTGATGCATTGGACAAAGAGAACAAGATATACA
ATTACACGGCAATTGAAGGTGAGGGTGATGCTAACATCCCTACTATTGAT
CATGTTTCTTATGAGACTAAGGTTGTGGGCACCCCTGACGGAGGAAGCAA
GAG
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